PDB Short entry for 4BDX HEADER HYDROLASE 08-OCT-12 4BDX TITLE THE STRUCTURE OF THE FNI-EGF TANDEM DOMAIN OF COAGULATION FACTOR XII COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR XIIA HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FNI-EGF, RESIDUES 133-215; COMPND 5 SYNONYM: COAGULATION FACTOR XII, HAGEMAN FACTOR, HAF; COMPND 6 EC: 3.4.21.38; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA KEYWDS HYDROLASE, FNI DOMAIN, EGF DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR D.X.BERINGER,L.M.J.KROON-BATENBURG REVDAT 5 12-JUL-17 4BDX 1 REVDAT 4 28-DEC-16 4BDX 1 JRNL REVDAT 3 17-APR-13 4BDX 1 TITLE REMARK REVDAT 2 20-FEB-13 4BDX 1 JRNL REVDAT 1 13-FEB-13 4BDX 0 JRNL AUTH D.X.BERINGER,L.M.J.KROON-BATENBURG JRNL TITL THE STRUCTURE OF THE FNI-EGF-LIKE TANDEM DOMAIN OF JRNL TITL 2 COAGULATION FACTOR XII SOLVED USING SIRAS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 94 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23385745 JRNL DOI 10.1107/S1744309113000286 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.530 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4156 - 3.4899 1.00 2638 128 0.2048 0.2665 REMARK 3 2 3.4899 - 2.7701 1.00 2599 123 0.2144 0.2573 REMARK 3 3 2.7701 - 2.4200 1.00 2622 127 0.2336 0.2423 REMARK 3 4 2.4200 - 2.1987 1.00 2625 109 0.2177 0.2296 REMARK 3 5 2.1987 - 2.0411 1.00 2631 133 0.2019 0.2264 REMARK 3 6 2.0411 - 1.9208 1.00 2597 150 0.2186 0.2343 REMARK 3 7 1.9208 - 1.8246 1.00 2566 145 0.2059 0.2142 REMARK 3 8 1.8246 - 1.7451 1.00 2607 150 0.2177 0.2277 REMARK 3 9 1.7451 - 1.6780 1.00 2585 163 0.2525 0.2517 REMARK 3 10 1.6780 - 1.6201 0.97 2506 161 0.2778 0.2592 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 709 REMARK 3 ANGLE : 1.128 953 REMARK 3 CHIRALITY : 0.081 95 REMARK 3 PLANARITY : 0.005 131 REMARK 3 DIHEDRAL : 14.871 264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3010 0.5375 -27.8942 REMARK 3 T TENSOR REMARK 3 T11: 0.0688 T22: 0.0964 REMARK 3 T33: 0.1860 T12: -0.0247 REMARK 3 T13: -0.0030 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 6.9083 L22: 5.1630 REMARK 3 L33: 8.0043 L12: -0.6294 REMARK 3 L13: -2.6354 L23: -1.3013 REMARK 3 S TENSOR REMARK 3 S11: -0.1330 S12: 0.1809 S13: -0.2477 REMARK 3 S21: -0.3309 S22: 0.0664 S23: 0.2356 REMARK 3 S31: 0.2191 S32: -0.1888 S33: 0.0146 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 19:27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9673 -1.0174 -20.7072 REMARK 3 T TENSOR REMARK 3 T11: 0.2466 T22: 0.6146 REMARK 3 T33: 0.3354 T12: 0.1267 REMARK 3 T13: 0.0209 T23: 0.0935 REMARK 3 L TENSOR REMARK 3 L11: 6.0320 L22: 5.9364 REMARK 3 L33: 7.7451 L12: 0.3253 REMARK 3 L13: 6.7825 L23: 1.1808 REMARK 3 S TENSOR REMARK 3 S11: -0.1949 S12: -1.0260 S13: -0.5061 REMARK 3 S21: 0.5574 S22: 0.0986 S23: -0.8545 REMARK 3 S31: 0.7426 S32: 0.9394 S33: 0.0666 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 28:43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9645 -4.2491 -28.2093 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.3644 REMARK 3 T33: 0.3649 T12: 0.0556 REMARK 3 T13: 0.0736 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 6.6465 L22: 3.0318 REMARK 3 L33: 6.2789 L12: 2.8384 REMARK 3 L13: 5.9444 L23: 1.8114 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.1331 S13: -1.0651 REMARK 3 S21: 0.0128 S22: 0.1777 S23: -0.5102 REMARK 3 S31: 0.6167 S32: 0.7580 S33: -0.2698 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 44:69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3892 6.7199 -13.5450 REMARK 3 T TENSOR REMARK 3 T11: 0.2919 T22: 0.9134 REMARK 3 T33: 0.2587 T12: -0.0123 REMARK 3 T13: -0.0589 T23: 0.1054 REMARK 3 L TENSOR REMARK 3 L11: 5.1613 L22: 6.4262 REMARK 3 L33: 7.7874 L12: -0.9658 REMARK 3 L13: -2.5780 L23: 3.7875 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: -0.1812 S13: 0.3783 REMARK 3 S21: -0.5429 S22: -0.3432 S23: -0.4836 REMARK 3 S31: -0.8825 S32: 0.5697 S33: 0.2292 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 70:84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1923 7.0125 -9.4499 REMARK 3 T TENSOR REMARK 3 T11: 0.3365 T22: 1.4044 REMARK 3 T33: 0.4681 T12: 0.0417 REMARK 3 T13: -0.1389 T23: -0.3406 REMARK 3 L TENSOR REMARK 3 L11: 2.3172 L22: 0.6483 REMARK 3 L33: 0.5749 L12: 0.5800 REMARK 3 L13: 1.1268 L23: 0.1638 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.9339 S13: 0.6286 REMARK 3 S21: 0.2117 S22: -0.6942 S23: 0.6374 REMARK 3 S31: -0.2765 S32: -0.8927 S33: 0.5450 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1290054393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03961 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14626 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 48.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 23.50 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5 16-18% PEG4, 0.2 M REMARK 280 POTASSIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.39400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 48.39400 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.73850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.39400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.86925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.39400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.60775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.39400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.60775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.39400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 11.86925 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 48.39400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.39400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.73850 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 48.39400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 48.39400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 23.73850 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 48.39400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 35.60775 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 48.39400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 11.86925 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 48.39400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 11.86925 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 48.39400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 35.60775 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 48.39400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 48.39400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 23.73850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2027 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2010 O HOH A 2011 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2031 O HOH A 2061 5553 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -10.74 84.16 REMARK 500 ALA A 27 -109.34 -133.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1085 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BDW RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE FNI-EGF TANDEM DOMAIN OF COAGULATION FACTOR REMARK 900 XII IN COMPLEX WITH HOLMIUM DBREF 4BDX A 3 83 UNP P00748 FA12_HUMAN 133 213 SEQADV 4BDX GLY A 1 UNP P00748 EXPRESSION TAG SEQADV 4BDX SER A 2 UNP P00748 EXPRESSION TAG SEQADV 4BDX PRO A 77 UNP P00748 ALA 207 VARIANT SEQADV 4BDX ALA A 84 UNP P00748 LYS 214 CLONING ARTIFACT SEQRES 1 A 85 GLY SER GLU LYS CYS PHE GLU PRO GLN LEU LEU ARG PHE SEQRES 2 A 85 PHE HIS LYS ASN GLU ILE TRP TYR ARG THR GLU GLN ALA SEQRES 3 A 85 ALA VAL ALA ARG CYS GLN CYS LYS GLY PRO ASP ALA HIS SEQRES 4 A 85 CYS GLN ARG LEU ALA SER GLN ALA CYS ARG THR ASN PRO SEQRES 5 A 85 CYS LEU HIS GLY GLY ARG CYS LEU GLU VAL GLU GLY HIS SEQRES 6 A 85 ARG LEU CYS HIS CYS PRO VAL GLY TYR THR GLY PRO PHE SEQRES 7 A 85 CYS ASP VAL ASP THR ALA ALA HET ACT A1085 4 HETNAM ACT ACETATE ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 HOH *67(H2 O) SHEET 1 AA 2 CYS A 5 GLU A 7 0 SHEET 2 AA 2 ARG A 12 PHE A 14 -1 O ARG A 12 N GLU A 7 SHEET 1 AB 3 ILE A 19 THR A 23 0 SHEET 2 AB 3 VAL A 28 CYS A 33 -1 O ALA A 29 N ARG A 22 SHEET 3 AB 3 ALA A 38 LEU A 43 -1 O HIS A 39 N GLN A 32 SHEET 1 AC 3 GLN A 46 ALA A 47 0 SHEET 2 AC 3 ARG A 58 VAL A 62 -1 O GLU A 61 N GLN A 46 SHEET 3 AC 3 HIS A 65 HIS A 69 -1 O HIS A 65 N VAL A 62 SHEET 1 AD 2 TYR A 74 THR A 75 0 SHEET 2 AD 2 VAL A 81 ASP A 82 -1 O VAL A 81 N THR A 75 SSBOND 1 CYS A 5 CYS A 33 1555 1555 2.11 SSBOND 2 CYS A 31 CYS A 40 1555 1555 2.05 SSBOND 3 CYS A 48 CYS A 59 1555 1555 2.03 SSBOND 4 CYS A 53 CYS A 68 1555 1555 2.03 SSBOND 5 CYS A 70 CYS A 79 1555 1555 2.05 CISPEP 1 ALA A 26 ALA A 27 0 5.76 CISPEP 2 GLY A 35 PRO A 36 0 5.96 SITE 1 AC1 2 LYS A 4 HOH A2009 CRYST1 96.788 96.788 47.477 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010332 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021063 0.00000