PDB Short entry for 4BHK HEADER TRANSCRIPTION/DNA 03-APR-13 4BHK TITLE CRYSTAL STRUCTURE OF MOSS LEAFY BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLORICAULA/LEAFY HOMOLOG 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 180-347; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MOSS-CR54 DNA; COMPND 8 CHAIN: W; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: MOSS-CR54 DNA; COMPND 12 CHAIN: X; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYSCOMITRELLA PATENS; SOURCE 3 ORGANISM_TAXID: 3218; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PETM-11; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPLFY-CTER; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: PHYSCOMITRELLA PATENS; SOURCE 12 ORGANISM_TAXID: 3218; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: PHYSCOMITRELLA PATENS; SOURCE 16 ORGANISM_TAXID: 3218 KEYWDS TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.H.NANAO,C.SAYOU,R.DUMAS,F.PARCY REVDAT 4 20-DEC-23 4BHK 1 REMARK REVDAT 3 19-FEB-14 4BHK 1 JRNL REVDAT 2 29-JAN-14 4BHK 1 JRNL REVDAT 1 22-JAN-14 4BHK 0 JRNL AUTH C.SAYOU,M.MONNIAUX,M.H.NANAO,E.MOYROUD,S.F.BROCKINGTON, JRNL AUTH 2 E.THEVENON,H.CHAHTANE,N.WARTHMANN,M.MELKONIAN,Y.ZHANG, JRNL AUTH 3 G.K.WONG,D.WEIGEL,F.PARCY,R.DUMAS JRNL TITL A PROMISCUOUS INTERMEDIATE UNDERLIES THE EVOLUTION OF LEAFY JRNL TITL 2 DNA BINDING SPECIFICITY. JRNL REF SCIENCE V. 343 645 2014 JRNL REFN ISSN 0036-8075 JRNL PMID 24436181 JRNL DOI 10.1126/SCIENCE.1248229 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1246 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2867 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2258 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2734 REMARK 3 BIN R VALUE (WORKING SET) : 0.2248 REMARK 3 BIN FREE R VALUE : 0.2463 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.64 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2626 REMARK 3 NUCLEIC ACID ATOMS : 1183 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.58810 REMARK 3 B22 (A**2) : -11.12840 REMARK 3 B33 (A**2) : 6.54030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.296 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4051 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5716 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1683 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 76 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 450 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4051 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 498 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4233 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.29 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|189 - 211} REMARK 3 ORIGIN FOR THE GROUP (A): -30.4328 -4.1032 5.3155 REMARK 3 T TENSOR REMARK 3 T11: -0.0090 T22: -0.0168 REMARK 3 T33: -0.0374 T12: -0.0146 REMARK 3 T13: 0.0374 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.5610 L22: 2.6292 REMARK 3 L33: 1.5505 L12: -0.9747 REMARK 3 L13: 0.4644 L23: 2.4249 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: -0.1134 S13: 0.0240 REMARK 3 S21: 0.1166 S22: -0.0357 S23: 0.1921 REMARK 3 S31: -0.0720 S32: -0.1833 S33: -0.0179 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|212 - 239} REMARK 3 ORIGIN FOR THE GROUP (A): -34.4750 -9.5213 -17.5061 REMARK 3 T TENSOR REMARK 3 T11: -0.0662 T22: 0.1048 REMARK 3 T33: -0.0203 T12: -0.0059 REMARK 3 T13: 0.0166 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 3.0558 L22: 0.7423 REMARK 3 L33: 0.0011 L12: -0.1687 REMARK 3 L13: 1.0818 L23: -0.1922 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.5160 S13: -0.1314 REMARK 3 S21: -0.1076 S22: 0.0003 S23: 0.1934 REMARK 3 S31: 0.0894 S32: -0.1609 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|240 - 284} REMARK 3 ORIGIN FOR THE GROUP (A): -26.8818 -7.1365 -8.9441 REMARK 3 T TENSOR REMARK 3 T11: -0.0701 T22: -0.0271 REMARK 3 T33: -0.0727 T12: -0.0025 REMARK 3 T13: 0.0180 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.6146 L22: 1.2638 REMARK 3 L33: 2.2440 L12: -0.3003 REMARK 3 L13: 0.2888 L23: 0.7463 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: 0.0840 S13: 0.0440 REMARK 3 S21: -0.1440 S22: -0.0734 S23: 0.0803 REMARK 3 S31: -0.1108 S32: -0.1491 S33: -0.0249 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|285 - 310} REMARK 3 ORIGIN FOR THE GROUP (A): -14.7378 -9.8147 2.1734 REMARK 3 T TENSOR REMARK 3 T11: -0.0122 T22: 0.0210 REMARK 3 T33: -0.0316 T12: -0.0129 REMARK 3 T13: -0.0150 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.8286 L22: 1.7637 REMARK 3 L33: 3.0369 L12: -0.2249 REMARK 3 L13: -0.1056 L23: 1.6864 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.1721 S13: 0.0973 REMARK 3 S21: 0.3003 S22: 0.0344 S23: -0.1930 REMARK 3 S31: 0.2123 S32: 0.0658 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|311 - 346} REMARK 3 ORIGIN FOR THE GROUP (A): -12.7291 -13.0097 -13.4692 REMARK 3 T TENSOR REMARK 3 T11: -0.0032 T22: 0.0204 REMARK 3 T33: -0.0910 T12: 0.0027 REMARK 3 T13: 0.0358 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 4.9393 L22: 2.6406 REMARK 3 L33: 1.6410 L12: 0.2218 REMARK 3 L13: 0.4230 L23: 0.0431 REMARK 3 S TENSOR REMARK 3 S11: 0.0667 S12: 0.3750 S13: -0.0859 REMARK 3 S21: -0.1818 S22: -0.0195 S23: -0.2135 REMARK 3 S31: 0.0157 S32: 0.2044 S33: -0.0472 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {B|189 - 211} REMARK 3 ORIGIN FOR THE GROUP (A): -12.2923 -6.5712 -57.7863 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: -0.0178 REMARK 3 T33: -0.0510 T12: 0.0113 REMARK 3 T13: 0.0274 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 4.4490 L22: 0.5758 REMARK 3 L33: 1.3412 L12: 1.1214 REMARK 3 L13: -0.6756 L23: -2.1242 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: 0.2057 S13: -0.0758 REMARK 3 S21: -0.1000 S22: -0.1048 S23: -0.1794 REMARK 3 S31: 0.0394 S32: 0.3237 S33: 0.1296 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {B|212 - 242} REMARK 3 ORIGIN FOR THE GROUP (A): -9.3137 -10.2706 -34.1880 REMARK 3 T TENSOR REMARK 3 T11: -0.0669 T22: 0.0661 REMARK 3 T33: -0.0051 T12: -0.0099 REMARK 3 T13: 0.0186 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.7839 L22: 0.6429 REMARK 3 L33: 2.1129 L12: -0.2709 REMARK 3 L13: 2.2654 L23: -0.5934 REMARK 3 S TENSOR REMARK 3 S11: -0.0487 S12: -0.3479 S13: -0.1925 REMARK 3 S21: 0.0636 S22: -0.0329 S23: -0.1457 REMARK 3 S31: 0.0650 S32: 0.1659 S33: 0.0817 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {B|243 - 285} REMARK 3 ORIGIN FOR THE GROUP (A): -16.2507 -8.6431 -44.5184 REMARK 3 T TENSOR REMARK 3 T11: -0.0561 T22: -0.0475 REMARK 3 T33: -0.0708 T12: 0.0206 REMARK 3 T13: 0.0054 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 1.4972 L22: 1.8649 REMARK 3 L33: 2.6370 L12: 0.8212 REMARK 3 L13: 0.3648 L23: -0.5660 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.1111 S13: -0.1135 REMARK 3 S21: 0.0866 S22: -0.0436 S23: -0.1224 REMARK 3 S31: -0.0371 S32: 0.1936 S33: 0.0304 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {B|286 - 310} REMARK 3 ORIGIN FOR THE GROUP (A): -28.3638 -11.8496 -54.2195 REMARK 3 T TENSOR REMARK 3 T11: 0.0114 T22: -0.0086 REMARK 3 T33: -0.0060 T12: -0.0070 REMARK 3 T13: -0.0291 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.2152 L22: 2.0247 REMARK 3 L33: 2.5511 L12: 0.3059 REMARK 3 L13: -0.6116 L23: -2.2106 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.1349 S13: 0.1436 REMARK 3 S21: -0.2181 S22: -0.0355 S23: 0.2514 REMARK 3 S31: 0.0601 S32: -0.0277 S33: 0.0698 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: {B|311 - 346} REMARK 3 ORIGIN FOR THE GROUP (A): -30.2854 -14.3176 -38.6982 REMARK 3 T TENSOR REMARK 3 T11: -0.0234 T22: 0.0253 REMARK 3 T33: -0.0784 T12: -0.0088 REMARK 3 T13: 0.0133 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 6.5790 L22: 2.6987 REMARK 3 L33: 1.0480 L12: -0.4426 REMARK 3 L13: -0.5226 L23: 0.1263 REMARK 3 S TENSOR REMARK 3 S11: 0.0479 S12: -0.1151 S13: -0.1295 REMARK 3 S21: 0.1261 S22: -0.0567 S23: 0.2242 REMARK 3 S31: -0.0791 S32: -0.2326 S33: 0.0089 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: {W|1 - 4} REMARK 3 ORIGIN FOR THE GROUP (A): -15.7057 13.4114 -68.9090 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.1166 REMARK 3 T33: -0.1087 T12: -0.0146 REMARK 3 T13: 0.1508 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 2.3390 L22: 3.2908 REMARK 3 L33: 2.5736 L12: -2.9104 REMARK 3 L13: 1.8436 L23: 0.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: -0.0968 S13: 0.2281 REMARK 3 S21: 0.0005 S22: 0.0235 S23: 0.0750 REMARK 3 S31: -0.0987 S32: -0.1312 S33: -0.0142 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: {W|5 - 10} REMARK 3 ORIGIN FOR THE GROUP (A): -18.4858 5.1996 -52.8889 REMARK 3 T TENSOR REMARK 3 T11: -0.0619 T22: -0.0414 REMARK 3 T33: -0.1470 T12: -0.0150 REMARK 3 T13: 0.0311 T23: 0.0367 REMARK 3 L TENSOR REMARK 3 L11: 4.3985 L22: 3.6736 REMARK 3 L33: 0.6338 L12: 0.2767 REMARK 3 L13: -2.5773 L23: -2.8860 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.0808 S13: 0.2478 REMARK 3 S21: 0.0933 S22: 0.1368 S23: 0.1279 REMARK 3 S31: -0.1726 S32: -0.0898 S33: -0.1602 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: {W|11 - 21} REMARK 3 ORIGIN FOR THE GROUP (A): -21.1454 7.0153 -23.1820 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: -0.0898 REMARK 3 T33: -0.0794 T12: 0.0911 REMARK 3 T13: 0.0918 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.7768 L22: 2.6831 REMARK 3 L33: 4.4460 L12: 2.3275 REMARK 3 L13: -1.4721 L23: 1.1040 REMARK 3 S TENSOR REMARK 3 S11: 0.1081 S12: 0.1381 S13: 0.4231 REMARK 3 S21: -0.4113 S22: 0.1462 S23: -0.2853 REMARK 3 S31: -0.2297 S32: -0.1519 S33: -0.2543 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: {W|22 - 29} REMARK 3 ORIGIN FOR THE GROUP (A): -27.0356 10.3172 8.3262 REMARK 3 T TENSOR REMARK 3 T11: -0.0001 T22: 0.0064 REMARK 3 T33: 0.0616 T12: 0.0115 REMARK 3 T13: 0.0581 T23: -0.0419 REMARK 3 L TENSOR REMARK 3 L11: 4.6558 L22: 4.1945 REMARK 3 L33: 2.5315 L12: 1.1945 REMARK 3 L13: -2.7759 L23: 2.6884 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.1083 S13: 0.3069 REMARK 3 S21: -0.1833 S22: 0.1340 S23: -0.2189 REMARK 3 S31: -0.0302 S32: 0.0025 S33: -0.1359 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: {X|1 - 6} REMARK 3 ORIGIN FOR THE GROUP (A): -24.7526 13.1983 13.7900 REMARK 3 T TENSOR REMARK 3 T11: -0.0172 T22: 0.0896 REMARK 3 T33: 0.0651 T12: -0.0443 REMARK 3 T13: 0.1051 T23: -0.0702 REMARK 3 L TENSOR REMARK 3 L11: 0.1237 L22: 0.0000 REMARK 3 L33: 2.5095 L12: 0.1823 REMARK 3 L13: -1.0801 L23: 2.2264 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0260 S13: 0.1457 REMARK 3 S21: 0.0111 S22: 0.0561 S23: -0.1294 REMARK 3 S31: 0.0386 S32: 0.1536 S33: -0.0766 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: {X|7 - 16} REMARK 3 ORIGIN FOR THE GROUP (A): -21.9845 8.0832 -14.1894 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: -0.1399 REMARK 3 T33: -0.0967 T12: 0.0434 REMARK 3 T13: 0.0690 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.3344 L22: 0.3276 REMARK 3 L33: 4.0570 L12: 2.0469 REMARK 3 L13: 0.1892 L23: -0.2526 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.1648 S13: 0.2743 REMARK 3 S21: -0.1476 S22: 0.3590 S23: 0.0902 REMARK 3 S31: -0.4291 S32: 0.0553 S33: -0.3360 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: {X|17 - 21} REMARK 3 ORIGIN FOR THE GROUP (A): -23.6974 4.1068 -39.7636 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: -0.0337 REMARK 3 T33: -0.1050 T12: 0.0700 REMARK 3 T13: 0.0490 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.2467 L22: 3.9634 REMARK 3 L33: 3.0953 L12: 2.8624 REMARK 3 L13: -1.0305 L23: 1.9236 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.0937 S13: 0.0655 REMARK 3 S21: -0.0803 S22: -0.0226 S23: 0.2081 REMARK 3 S31: -0.0950 S32: -0.2214 S33: -0.0404 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: {X|22 - 29} REMARK 3 ORIGIN FOR THE GROUP (A): -15.3092 8.0768 -61.5946 REMARK 3 T TENSOR REMARK 3 T11: -0.0046 T22: 0.0064 REMARK 3 T33: -0.0717 T12: -0.0304 REMARK 3 T13: 0.0711 T23: 0.0699 REMARK 3 L TENSOR REMARK 3 L11: 6.1614 L22: 6.2500 REMARK 3 L33: 4.0434 L12: -2.8551 REMARK 3 L13: -2.8356 L23: -2.8614 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: 0.0230 S13: 0.0798 REMARK 3 S21: 0.2783 S22: 0.1571 S23: 0.1217 REMARK 3 S31: -0.1752 S32: 0.0035 S33: -0.1292 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-13. REMARK 100 THE DEPOSITION ID IS D_1290056375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24528 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.780 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.78 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VY2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 %(V/V) MPD, 0.05 M MES, PH 5.6, 0.1 REMARK 280 M MAGNESIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.36100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.21200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.26150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.21200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.36100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.26150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, W, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 177 REMARK 465 ALA A 178 REMARK 465 MET A 179 REMARK 465 GLU A 180 REMARK 465 VAL A 181 REMARK 465 GLY A 182 REMARK 465 GLU A 183 REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 GLU A 186 REMARK 465 GLU A 187 REMARK 465 ARG A 188 REMARK 465 GLY A 347 REMARK 465 GLY B 177 REMARK 465 ALA B 178 REMARK 465 MET B 179 REMARK 465 GLU B 180 REMARK 465 VAL B 181 REMARK 465 GLY B 182 REMARK 465 GLU B 183 REMARK 465 ASP B 184 REMARK 465 GLY B 185 REMARK 465 GLU B 186 REMARK 465 GLU B 187 REMARK 465 ARG B 188 REMARK 465 GLY B 347 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG W 6 O3' DG W 6 C3' -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG W 1 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC W 2 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC W 2 C3' - O3' - P ANGL. DEV. = 10.1 DEGREES REMARK 500 DC W 3 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES REMARK 500 DG W 6 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 DC W 9 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA W 11 C3' - O3' - P ANGL. DEV. = 7.7 DEGREES REMARK 500 DC W 12 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG W 15 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DC W 16 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG W 18 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DG W 22 C3' - O3' - P ANGL. DEV. = 12.6 DEGREES REMARK 500 DG W 24 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG X 1 C3' - O3' - P ANGL. DEV. = 8.6 DEGREES REMARK 500 DT X 2 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DC X 4 O4' - C1' - N1 ANGL. DEV. = 6.7 DEGREES REMARK 500 DC X 4 C3' - O3' - P ANGL. DEV. = 11.1 DEGREES REMARK 500 DT X 11 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC X 12 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC X 15 O4' - C1' - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 DT X 16 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC X 22 C3' - O3' - P ANGL. DEV. = 12.3 DEGREES REMARK 500 DC X 24 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT X 26 C4 - C5 - C7 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT X 26 C6 - C5 - C7 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG X 28 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DC X 29 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 255 57.44 -109.84 REMARK 500 ASP A 276 76.28 -152.75 REMARK 500 ASN B 312 40.20 -106.66 REMARK 500 ARG B 327 -39.64 -38.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 4BHK A 180 347 UNP Q94IF5 Q94IF5_PHYPA 180 347 DBREF 4BHK B 180 347 UNP Q94IF5 Q94IF5_PHYPA 180 347 DBREF 4BHK W 1 29 PDB 4BHK 4BHK 1 29 DBREF 4BHK X 1 29 PDB 4BHK 4BHK 1 29 SEQADV 4BHK GLY A 177 UNP Q94IF5 EXPRESSION TAG SEQADV 4BHK ALA A 178 UNP Q94IF5 EXPRESSION TAG SEQADV 4BHK MET A 179 UNP Q94IF5 EXPRESSION TAG SEQADV 4BHK GLY B 177 UNP Q94IF5 EXPRESSION TAG SEQADV 4BHK ALA B 178 UNP Q94IF5 EXPRESSION TAG SEQADV 4BHK MET B 179 UNP Q94IF5 EXPRESSION TAG SEQRES 1 A 171 GLY ALA MET GLU VAL GLY GLU ASP GLY GLU GLU ARG PRO SEQRES 2 A 171 ARG GLU HIS PRO PHE ILE VAL THR GLU PRO GLY GLU PRO SEQRES 3 A 171 ALA LYS GLY LYS LYS ASN GLY LEU ASP TYR LEU PHE ASP SEQRES 4 A 171 LEU TYR GLU GLN CYS GLY LYS PHE LEU GLU GLU VAL GLN SEQRES 5 A 171 HIS ILE ALA LYS GLU LYS GLY GLU LYS CYS PRO SER LYS SEQRES 6 A 171 VAL THR ASN GLU VAL PHE ARG HIS ALA LYS LEU THR GLY SEQRES 7 A 171 ALA GLY TYR ILE ASN LYS PRO LYS MET ARG ASP TYR VAL SEQRES 8 A 171 HIS CYS TYR ALA LEU HIS CYS LEU ASP VAL GLU THR SER SEQRES 9 A 171 ASN ASN LEU ARG LYS GLU TYR LYS GLU ARG GLY GLU ASN SEQRES 10 A 171 VAL GLY ALA TRP CYS GLN ALA CYS TYR PHE PRO LEU VAL SEQRES 11 A 171 LYS LEU ALA ARG GLN ASN GLU TRP ASP ILE ASP ASP LEU SEQRES 12 A 171 PHE ASN ARG ASN ASP LYS LEU ARG ILE TRP TYR VAL PRO SEQRES 13 A 171 THR LYS LEU ARG GLN LEU CYS HIS ILE GLU ARG MET LYS SEQRES 14 A 171 HIS GLY SEQRES 1 B 171 GLY ALA MET GLU VAL GLY GLU ASP GLY GLU GLU ARG PRO SEQRES 2 B 171 ARG GLU HIS PRO PHE ILE VAL THR GLU PRO GLY GLU PRO SEQRES 3 B 171 ALA LYS GLY LYS LYS ASN GLY LEU ASP TYR LEU PHE ASP SEQRES 4 B 171 LEU TYR GLU GLN CYS GLY LYS PHE LEU GLU GLU VAL GLN SEQRES 5 B 171 HIS ILE ALA LYS GLU LYS GLY GLU LYS CYS PRO SER LYS SEQRES 6 B 171 VAL THR ASN GLU VAL PHE ARG HIS ALA LYS LEU THR GLY SEQRES 7 B 171 ALA GLY TYR ILE ASN LYS PRO LYS MET ARG ASP TYR VAL SEQRES 8 B 171 HIS CYS TYR ALA LEU HIS CYS LEU ASP VAL GLU THR SER SEQRES 9 B 171 ASN ASN LEU ARG LYS GLU TYR LYS GLU ARG GLY GLU ASN SEQRES 10 B 171 VAL GLY ALA TRP CYS GLN ALA CYS TYR PHE PRO LEU VAL SEQRES 11 B 171 LYS LEU ALA ARG GLN ASN GLU TRP ASP ILE ASP ASP LEU SEQRES 12 B 171 PHE ASN ARG ASN ASP LYS LEU ARG ILE TRP TYR VAL PRO SEQRES 13 B 171 THR LYS LEU ARG GLN LEU CYS HIS ILE GLU ARG MET LYS SEQRES 14 B 171 HIS GLY SEQRES 1 W 29 DG DC DC DA DC DG DG DG DC DG DA DC DC SEQRES 2 W 29 DA DG DC DG DG DA DC DG DG DT DG DA DG SEQRES 3 W 29 DC DA DC SEQRES 1 X 29 DG DT DG DC DT DC DA DC DC DG DT DC DC SEQRES 2 X 29 DG DC DT DG DG DT DC DG DC DC DC DG DT SEQRES 3 X 29 DG DG DC FORMUL 5 HOH *108(H2 O) HELIX 1 1 GLY A 209 GLY A 235 1 27 HELIX 2 2 THR A 243 THR A 253 1 11 HELIX 3 3 ASN A 259 TYR A 266 1 8 HELIX 4 4 TYR A 266 ASP A 276 1 11 HELIX 5 5 ASP A 276 ARG A 290 1 15 HELIX 6 6 ASN A 293 CYS A 301 1 9 HELIX 7 7 CYS A 301 ASN A 312 1 12 HELIX 8 8 ASP A 315 ASN A 323 1 9 HELIX 9 9 PRO A 332 HIS A 346 1 15 HELIX 10 10 GLY B 209 GLY B 235 1 27 HELIX 11 11 THR B 243 THR B 253 1 11 HELIX 12 12 ASN B 259 TYR B 266 1 8 HELIX 13 13 TYR B 266 ASP B 276 1 11 HELIX 14 14 ASP B 276 ARG B 290 1 15 HELIX 15 15 ASN B 293 CYS B 301 1 9 HELIX 16 16 CYS B 301 ASN B 312 1 12 HELIX 17 17 ASP B 315 ASN B 323 1 9 HELIX 18 18 PRO B 332 HIS B 346 1 15 CRYST1 42.722 84.523 152.424 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006561 0.00000 MTRIX1 1 -0.999900 0.005134 -0.011330 -43.43000 1 MTRIX2 1 0.005875 0.997800 -0.066400 -1.37300 1 MTRIX3 1 0.010970 -0.066460 0.997700 -52.70000 1