PDB Short entry for 4BPC HEADER HYDROLASE 24-MAY-13 4BPC TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF PROTEIN TYROSINE PHOSPHATASE TITLE 2 SIGMA IN THE SULFENIC ACID FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE S; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOPLASMIC PHOSPHATASE DOMAINS, RESIDUES 1367-1948; COMPND 5 SYNONYM: R-PTP-S, RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE SIGMA,; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A(+) KEYWDS HYDROLASE, PROTEOGLYCAN, REDOX REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR T.J.JEON,P.N.CHIEN,H.J.CHUN,S.E.RYU REVDAT 6 20-DEC-23 4BPC 1 LINK REVDAT 5 06-FEB-19 4BPC 1 REMARK REVDAT 4 30-JAN-19 4BPC 1 REMARK REVDAT 3 23-SEP-15 4BPC 1 REMARK REVDAT 2 07-AUG-13 4BPC 1 JRNL REVDAT 1 17-JUL-13 4BPC 0 JRNL AUTH T.J.JEON,P.N.CHIEN,H.J.CHUN,S.E.RYU JRNL TITL STRUCTURE OF THE CATALYTIC DOMAIN OF PROTEIN TYROSINE JRNL TITL 2 PHOSPHATASE SIGMA IN THE SULFENIC ACID FORM JRNL REF MOL.CELLS V. 36 55 2013 JRNL REFN ISSN 1016-8478 JRNL PMID 23820885 JRNL DOI 10.1007/S10059-013-0033-X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 34043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1781 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2430 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4587 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.783 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4707 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4391 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6383 ; 1.736 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10075 ; 0.908 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 6.513 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 241 ;34.743 ;23.568 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 787 ;15.385 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;19.266 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 677 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5387 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1158 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4BPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36574 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 7.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2FH7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M SUCCINIC ACID, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.14100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.28200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.71150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 102.85250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.57050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1367 REMARK 465 ASN A 1689 REMARK 465 SER A 1690 REMARK 465 LYS A 1691 REMARK 465 ALA A 1692 REMARK 465 HIS A 1693 REMARK 465 THR A 1694 REMARK 465 SER A 1695 REMARK 465 ARG A 1696 REMARK 465 PHE A 1943 REMARK 465 ASP A 1944 REMARK 465 HIS A 1945 REMARK 465 TYR A 1946 REMARK 465 ALA A 1947 REMARK 465 THR A 1948 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A1368 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD CSO A 1589 O HOH A 2097 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 1384 NH2 ARG A 1728 2665 1.01 REMARK 500 CZ ARG A 1384 NH2 ARG A 1728 2665 1.58 REMARK 500 NH1 ARG A 1384 CZ ARG A 1728 2665 1.74 REMARK 500 NH2 ARG A 1384 NH2 ARG A 1728 2665 2.01 REMARK 500 NH1 ARG A 1384 NH1 ARG A 1728 2665 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A1572 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1369 -19.23 88.04 REMARK 500 HIS A1370 77.77 -150.13 REMARK 500 PRO A1372 155.70 -45.96 REMARK 500 TRP A1408 51.47 -149.74 REMARK 500 MET A1490 32.11 -94.85 REMARK 500 SER A1497 -39.23 69.85 REMARK 500 CSO A1589 -116.24 -116.91 REMARK 500 SER A1590 -60.22 -93.22 REMARK 500 VAL A1593 -36.13 -133.91 REMARK 500 LYS A1613 26.18 47.24 REMARK 500 VAL A1632 88.33 59.98 REMARK 500 ALA A1796 -64.61 -135.66 REMARK 500 GLN A1803 -130.11 55.46 REMARK 500 CYS A1880 -115.89 -124.90 REMARK 500 SER A1881 -68.85 -99.46 REMARK 500 VAL A1923 78.28 68.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE BASED ON NCBI: NM_002850.2. DBREF 4BPC A 1367 1948 UNP Q13332 PTPRS_HUMAN 1367 1948 SEQADV 4BPC ARG A 1457 UNP Q13332 CYS 1457 VARIANT SEQADV 4BPC ALA A 1530 UNP Q13332 CYS 1530 ENGINEERED MUTATION SEQADV 4BPC ALA A 1577 UNP Q13332 CYS 1577 ENGINEERED MUTATION SEQADV 4BPC ALA A 1598 UNP Q13332 CYS 1598 ENGINEERED MUTATION SEQADV 4BPC ALA A 1651 UNP Q13332 CYS 1651 ENGINEERED MUTATION SEQADV 4BPC ALA A 1704 UNP Q13332 CYS 1704 ENGINEERED MUTATION SEQADV 4BPC ALA A 1723 UNP Q13332 CYS 1723 ENGINEERED MUTATION SEQADV 4BPC ALA A 1932 UNP Q13332 CYS 1932 ENGINEERED MUTATION SEQRES 1 A 582 MET LEU SER HIS PRO PRO ILE PRO ILE ALA ASP MET ALA SEQRES 2 A 582 GLU HIS THR GLU ARG LEU LYS ALA ASN ASP SER LEU LYS SEQRES 3 A 582 LEU SER GLN GLU TYR GLU SER ILE ASP PRO GLY GLN GLN SEQRES 4 A 582 PHE THR TRP GLU HIS SER ASN LEU GLU VAL ASN LYS PRO SEQRES 5 A 582 LYS ASN ARG TYR ALA ASN VAL ILE ALA TYR ASP HIS SER SEQRES 6 A 582 ARG VAL ILE LEU GLN PRO ILE GLU GLY ILE MET GLY SER SEQRES 7 A 582 ASP TYR ILE ASN ALA ASN TYR VAL ASP GLY TYR ARG ARG SEQRES 8 A 582 GLN ASN ALA TYR ILE ALA THR GLN GLY PRO LEU PRO GLU SEQRES 9 A 582 THR PHE GLY ASP PHE TRP ARG MET VAL TRP GLU GLN ARG SEQRES 10 A 582 SER ALA THR ILE VAL MET MET THR ARG LEU GLU GLU LYS SEQRES 11 A 582 SER ARG ILE LYS CYS ASP GLN TYR TRP PRO ASN ARG GLY SEQRES 12 A 582 THR GLU THR TYR GLY PHE ILE GLN VAL THR LEU LEU ASP SEQRES 13 A 582 THR ILE GLU LEU ALA THR PHE ALA VAL ARG THR PHE SER SEQRES 14 A 582 LEU HIS LYS ASN GLY SER SER GLU LYS ARG GLU VAL ARG SEQRES 15 A 582 GLN PHE GLN PHE THR ALA TRP PRO ASP HIS GLY VAL PRO SEQRES 16 A 582 GLU TYR PRO THR PRO PHE LEU ALA PHE LEU ARG ARG VAL SEQRES 17 A 582 LYS THR ALA ASN PRO PRO ASP ALA GLY PRO ILE VAL VAL SEQRES 18 A 582 HIS CSO SER ALA GLY VAL GLY ARG THR GLY ALA PHE ILE SEQRES 19 A 582 VAL ILE ASP ALA MET LEU GLU ARG ILE LYS PRO GLU LYS SEQRES 20 A 582 THR VAL ASP VAL TYR GLY HIS VAL THR LEU MET ARG SER SEQRES 21 A 582 GLN ARG ASN TYR MET VAL GLN THR GLU ASP GLN TYR SER SEQRES 22 A 582 PHE ILE HIS GLU ALA LEU LEU GLU ALA VAL GLY ALA GLY SEQRES 23 A 582 ASN THR GLU VAL PRO ALA ARG SER LEU TYR ALA TYR ILE SEQRES 24 A 582 GLN LYS LEU ALA GLN VAL GLU PRO GLY GLU HIS VAL THR SEQRES 25 A 582 GLY MET GLU LEU GLU PHE LYS ARG LEU ALA ASN SER LYS SEQRES 26 A 582 ALA HIS THR SER ARG PHE ILE SER ALA ASN LEU PRO ALA SEQRES 27 A 582 ASN LYS PHE LYS ASN ARG LEU VAL ASN ILE MET PRO TYR SEQRES 28 A 582 GLU SER THR ARG VAL ALA LEU GLN PRO ILE ARG GLY VAL SEQRES 29 A 582 GLU GLY SER ASP TYR ILE ASN ALA SER PHE ILE ASP GLY SEQRES 30 A 582 TYR ARG GLN GLN LYS ALA TYR ILE ALA THR GLN GLY PRO SEQRES 31 A 582 LEU ALA GLU THR THR GLU ASP PHE TRP ARG MET LEU TRP SEQRES 32 A 582 GLU ASN ASN SER THR ILE VAL VAL MET LEU THR LYS LEU SEQRES 33 A 582 ARG GLU MET GLY ARG GLU LYS CYS HIS GLN TYR TRP PRO SEQRES 34 A 582 ALA GLU ARG SER ALA ARG TYR GLN TYR PHE VAL VAL ASP SEQRES 35 A 582 PRO MET ALA GLU TYR ASN MET PRO GLN TYR ILE LEU ARG SEQRES 36 A 582 GLU PHE LYS VAL THR ASP ALA ARG ASP GLY GLN SER ARG SEQRES 37 A 582 THR VAL ARG GLN PHE GLN PHE THR ASP TRP PRO GLU GLN SEQRES 38 A 582 GLY VAL PRO LYS SER GLY GLU GLY PHE ILE ASP PHE ILE SEQRES 39 A 582 GLY GLN VAL HIS LYS THR LYS GLU GLN PHE GLY GLN ASP SEQRES 40 A 582 GLY PRO ILE SER VAL HIS CYS SER ALA GLY VAL GLY ARG SEQRES 41 A 582 THR GLY VAL PHE ILE THR LEU SER ILE VAL LEU GLU ARG SEQRES 42 A 582 MET ARG TYR GLU GLY VAL VAL ASP ILE PHE GLN THR VAL SEQRES 43 A 582 LYS MET LEU ARG THR GLN ARG PRO ALA MET VAL GLN THR SEQRES 44 A 582 GLU ASP GLU TYR GLN PHE ALA TYR GLN ALA ALA LEU GLU SEQRES 45 A 582 TYR LEU GLY SER PHE ASP HIS TYR ALA THR MODRES 4BPC CSO A 1589 CYS S-HYDROXYCYSTEINE HET CSO A1589 7 HETNAM CSO S-HYDROXYCYSTEINE FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 HOH *181(H2 O) HELIX 1 1 ASP A 1377 SER A 1399 1 23 HELIX 2 2 TRP A 1408 LEU A 1413 1 6 HELIX 3 3 ASN A 1416 ASN A 1420 5 5 HELIX 4 4 TYR A 1428 HIS A 1430 5 3 HELIX 5 5 LEU A 1468 GLU A 1470 5 3 HELIX 6 6 THR A 1471 ARG A 1483 1 13 HELIX 7 7 PRO A 1564 ASN A 1578 1 15 HELIX 8 8 GLY A 1594 LYS A 1613 1 20 HELIX 9 9 ASP A 1616 SER A 1626 1 11 HELIX 10 10 THR A 1634 ALA A 1651 1 18 HELIX 11 11 SER A 1660 GLN A 1670 1 11 HELIX 12 12 THR A 1678 ARG A 1686 1 9 HELIX 13 13 PHE A 1697 LEU A 1702 1 6 HELIX 14 14 PRO A 1703 ASN A 1709 5 7 HELIX 15 15 LEU A 1757 GLU A 1759 5 3 HELIX 16 16 THR A 1760 ASN A 1771 1 12 HELIX 17 17 GLY A 1853 PHE A 1870 1 18 HELIX 18 18 VAL A 1884 GLY A 1904 1 21 HELIX 19 19 ASP A 1907 ARG A 1919 1 13 HELIX 20 20 THR A 1925 SER A 1942 1 18 SHEET 1 AA 2 ILE A1373 PRO A1374 0 SHEET 2 AA 2 THR A1614 VAL A1615 -1 O VAL A1615 N ILE A1373 SHEET 1 AB 9 ARG A1432 ILE A1434 0 SHEET 2 AB 9 TYR A1446 GLY A1454 -1 N ILE A1447 O VAL A1433 SHEET 3 AB 9 ARG A1457 THR A1464 -1 O ARG A1457 N GLY A1454 SHEET 4 AB 9 ILE A1585 HIS A1588 1 O ILE A1585 N ILE A1462 SHEET 5 AB 9 THR A1486 MET A1489 1 O THR A1486 N VAL A1586 SHEET 6 AB 9 ARG A1545 PHE A1552 1 O ARG A1548 N ILE A1487 SHEET 7 AB 9 PHE A1529 LYS A1538 -1 O ALA A1530 N GLN A1551 SHEET 8 AB 9 ILE A1516 GLU A1525 -1 O GLN A1517 N HIS A1537 SHEET 9 AB 9 GLY A1509 TYR A1513 -1 O GLY A1509 N LEU A1520 SHEET 1 AC 2 GLU A1494 GLU A1495 0 SHEET 2 AC 2 ARG A1498 ILE A1499 -1 O ARG A1498 N GLU A1495 SHEET 1 AD 2 VAL A1656 PRO A1657 0 SHEET 2 AD 2 VAL A1905 VAL A1906 -1 O VAL A1906 N VAL A1656 SHEET 1 AE 8 ALA A1738 ILE A1741 0 SHEET 2 AE 8 TYR A1750 THR A1753 -1 O TYR A1750 N ILE A1741 SHEET 3 AE 8 ILE A1876 HIS A1879 1 O ILE A1876 N ILE A1751 SHEET 4 AE 8 ILE A1775 MET A1778 1 O ILE A1775 N SER A1877 SHEET 5 AE 8 SER A1833 PHE A1841 1 O ARG A1837 N VAL A1776 SHEET 6 AE 8 TYR A1818 ASP A1827 -1 O ILE A1819 N GLN A1840 SHEET 7 AE 8 PHE A1805 ASN A1814 -1 O VAL A1806 N THR A1826 SHEET 8 AE 8 ALA A1800 TYR A1802 -1 O ALA A1800 N VAL A1807 SHEET 1 AF 2 ARG A1783 GLU A1784 0 SHEET 2 AF 2 ARG A1787 GLU A1788 -1 O ARG A1787 N GLU A1784 LINK C HIS A1588 N CSO A1589 1555 1555 1.34 LINK C CSO A1589 N SER A1590 1555 1555 1.34 CRYST1 94.672 94.672 123.423 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010563 0.006098 0.000000 0.00000 SCALE2 0.000000 0.012197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008102 0.00000