PDB Short entry for 4BPI HEADER APOPTOSIS 27-MAY-13 4BPI TITLE MCL-1 BOUND TO ALPHA BETA PUMA BH3 PEPTIDE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION PROTEIN CONSISTING OF INDUCED MYELOID LEUKEMIA CELL COMPND 3 DIFFERENTIATION PROTEIN MCL-1 HOMOLOG; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: FUSION PROTEIN OF MOUSE MCL-1, RESIDUES 152-189 AND HUMAN COMPND 6 MCL-1, RESIDUES 209-327; COMPND 7 SYNONYM: BCL-2-RELATED PROTEIN EAT/MCL1, BCL-2-LIKE PROTEIN 3, BCL2- COMPND 8 L-3, BCL-2-RELATED PROTEIN EAT/MCL1, MCL1/EAT, MCL-1 BCL-2-LIKE COMPND 9 PROTEIN 3, BCL2-L-3, BCL-2-RELATED PROTEIN EAT/MCL1, MCL1/EAT; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: ALPHA BETA BH3PEPTIDE; COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE, HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS, CHIMERA, BIM EXPDTA X-RAY DIFFRACTION AUTHOR B.J.SMITH,E.F.LEE,J.W.CHECCO,S.H.GELLMAN,W.D.FAIRLIE REVDAT 7 20-DEC-23 4BPI 1 REMARK REVDAT 6 15-NOV-23 4BPI 1 LINK ATOM REVDAT 5 27-SEP-23 4BPI 1 REMARK LINK REVDAT 4 10-JUL-19 4BPI 1 REMARK REVDAT 3 24-APR-19 4BPI 1 REMARK SEQRES LINK REVDAT 2 15-MAR-17 4BPI 1 SOURCE REVDAT 1 09-APR-14 4BPI 0 JRNL AUTH B.J.SMITH,E.F.LEE,J.W.CHECCO,M.EVANGELISTA,S.H.GELLMAN, JRNL AUTH 2 W.D.FAIRLIE JRNL TITL STRUCTURE-GUIDED RATIONAL DESIGN OF ALPHA/BETA-PEPTIDE JRNL TITL 2 FOLDAMERS WITH HIGH AFFINITY FOR BCL-2 FAMILY PROSURVIVAL JRNL TITL 3 PROTEINS. JRNL REF CHEMBIOCHEM V. 14 1564 2013 JRNL REFN ISSN 1439-4227 JRNL PMID 23929624 JRNL DOI 10.1002/CBIC.201300351 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 11279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.6890 - 3.1430 0.99 2792 148 0.2124 0.2276 REMARK 3 2 3.1430 - 2.4966 1.00 2690 142 0.2451 0.2811 REMARK 3 3 2.4966 - 2.1816 1.00 2667 141 0.1961 0.2409 REMARK 3 4 2.1816 - 1.9824 0.97 2564 135 0.2064 0.2734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1338 REMARK 3 ANGLE : 1.203 1770 REMARK 3 CHIRALITY : 0.080 196 REMARK 3 PLANARITY : 0.004 228 REMARK 3 DIHEDRAL : 15.661 503 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.1676 -13.5078 8.2027 REMARK 3 T TENSOR REMARK 3 T11: 0.4211 T22: 0.2091 REMARK 3 T33: 0.2587 T12: -0.0178 REMARK 3 T13: 0.0087 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.1489 L22: 4.4709 REMARK 3 L33: 3.1175 L12: 1.0133 REMARK 3 L13: 1.5528 L23: 0.1178 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: 0.1938 S13: -0.4084 REMARK 3 S21: -0.2717 S22: 0.1988 S23: 0.0298 REMARK 3 S31: 0.5251 S32: -0.0781 S33: -0.1685 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4BPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1290056911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.265106 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11279 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 18.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.09 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 15.60 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NL9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH7.5 1M SODIUM ACETATE, REMARK 280 0.05M CADMIUM SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.64333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.32167 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.32167 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.64333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 31.32167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 166 REMARK 465 PRO A 167 REMARK 465 LEU A 168 REMARK 465 GLY A 169 REMARK 465 SER A 170 REMARK 465 GLU A 171 REMARK 465 LYS A 194 REMARK 465 ASP A 195 REMARK 465 SER A 196 REMARK 465 LYS A 197 REMARK 465 PRO A 198 REMARK 465 LEU A 199 REMARK 465 GLY A 200 REMARK 465 GLU A 201 REMARK 465 ALA A 202 REMARK 465 GLY A 203 REMARK 465 ASP A 323 REMARK 465 LEU A 324 REMARK 465 GLU A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 172 CB CG OD1 OD2 REMARK 470 ASP A 173 CG OD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 176 CD NE CZ NH1 NH2 REMARK 480 GLU A 180 CG CD OE1 OE2 REMARK 480 ARG A 184 NE CZ NH1 NH2 REMARK 480 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 480 ALA A 204 N CA CB REMARK 480 ARG A 207 NE CZ NH1 NH2 REMARK 480 ARG A 208 CD NE CZ NH1 NH2 REMARK 480 GLU A 211 CD OE1 OE2 REMARK 480 ASN A 223 CG OD1 ND2 REMARK 480 GLU A 225 CG CD OE1 OE2 REMARK 480 LEU A 235 CB CG CD1 CD2 REMARK 480 ASP A 236 CB CG OD1 OD2 REMARK 480 LYS A 238 C O CB CG CD CE NZ REMARK 480 LYS A 244 CG CD CE REMARK 480 LYS A 276 NZ REMARK 480 GLN A 283 OE1 NE2 REMARK 480 GLU A 284 CD OE1 OE2 REMARK 480 GLU A 292 CG CD OE1 OE2 REMARK 480 ARG A 303 NE CZ NH1 NH2 REMARK 480 LYS A 308 CD CE NZ REMARK 480 GLU A 317 CB CG CD OE1 OE2 REMARK 480 VAL A 321 CG1 CG2 REMARK 480 GLU B 88 CG CD OE1 OE2 REMARK 480 B3E B 89 CG CD REMARK 480 B3D B 100 OE1 OE2 REMARK 480 GLN B 104 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 288 O HOH A 2016 4555 1.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 286 CB CYS A 286 SG -0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 B3E B 89 C - N - CA ANGL. DEV. = -16.0 DEGREES REMARK 500 B3Q B 93 C - N - CA ANGL. DEV. = -19.2 DEGREES REMARK 500 B3D B 100 C - N - CA ANGL. DEV. = -17.9 DEGREES REMARK 500 B3A B 103 C - N - CA ANGL. DEV. = -18.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 191 -122.20 -124.32 REMARK 500 ASP A 236 -74.48 -114.26 REMARK 500 ILE A 237 92.75 44.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 B3E B 89 ILE B 90 146.79 REMARK 500 B3Q B 93 LEU B 94 145.83 REMARK 500 B3D B 100 LEU B 101 145.31 REMARK 500 B3A B 103 GLN B 104 141.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 B3E B 89 -17.01 REMARK 500 B3Q B 93 -18.14 REMARK 500 B3D B 100 -17.88 REMARK 500 B3A B 103 -17.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1326 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 236 O REMARK 620 2 ILE A 237 O 55.6 REMARK 620 3 HIS A 277 NE2 171.3 127.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1324 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 240 OE1 REMARK 620 2 CYS A 286 SG 104.2 REMARK 620 3 HOH A2016 O 119.2 83.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1325 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 252 NE2 REMARK 620 2 ASP A 304 OD2 95.4 REMARK 620 3 ASP A 304 OD1 95.3 53.5 REMARK 620 4 B3E B 89 OF1 76.1 165.2 138.3 REMARK 620 5 B3E B 89 OF2 119.8 124.5 143.8 53.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1323 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 277 ND1 REMARK 620 2 HOH A2006 O 162.5 REMARK 620 3 B3D B 100 OE1 111.1 82.9 REMARK 620 4 B3D B 100 OE2 76.4 121.0 49.6 REMARK 620 5 B3D B 100 OE2 98.7 63.9 131.7 174.5 REMARK 620 6 B3D B 100 OE1 97.4 65.2 135.2 173.7 3.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1324 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 286 SG REMARK 620 2 CYS A 286 SG 82.3 REMARK 620 3 GLU A 288 OE1 73.3 111.6 REMARK 620 4 GLU A 288 OE2 131.4 100.4 60.6 REMARK 620 5 HOH A2015 O 113.4 141.0 107.1 94.7 REMARK 620 6 HOH A2016 O 174.4 93.8 104.7 45.2 72.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1327 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2017 O REMARK 620 2 GLU B 88 OE2 66.3 REMARK 620 N 1 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1327 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BPJ RELATED DB: PDB REMARK 900 MCL-1 BOUND TO ALPHA BETA PUMA BH3 PEPTIDE 3 REMARK 900 RELATED ID: 4BPK RELATED DB: PDB REMARK 900 BCL-XL BOUND TO ALPHA BETA PUMA BH3 PEPTIDE 5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHIMERA WITH MOUSE MCL-1 DBREF 4BPI A 171 208 UNP P97287 MCL1_MOUSE 152 189 DBREF 4BPI A 209 327 UNP Q07820 MCL1_HUMAN 209 327 DBREF 4BPI B 87 105 PDB 4BPI 4BPI 87 105 SEQADV 4BPI GLY A 166 UNP P97287 EXPRESSION TAG SEQADV 4BPI PRO A 167 UNP P97287 EXPRESSION TAG SEQADV 4BPI LEU A 168 UNP P97287 EXPRESSION TAG SEQADV 4BPI GLY A 169 UNP P97287 EXPRESSION TAG SEQADV 4BPI SER A 170 UNP P97287 EXPRESSION TAG SEQRES 1 A 162 GLY PRO LEU GLY SER GLU ASP ASP LEU TYR ARG GLN SER SEQRES 2 A 162 LEU GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR SEQRES 3 A 162 GLY SER LYS ASP SER LYS PRO LEU GLY GLU ALA GLY ALA SEQRES 4 A 162 ALA GLY ARG ARG ALA LEU GLU THR LEU ARG ARG VAL GLY SEQRES 5 A 162 ASP GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY SEQRES 6 A 162 MET LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL SEQRES 7 A 162 LYS SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP SEQRES 8 A 162 GLY VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER SEQRES 9 A 162 PHE GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN SEQRES 10 A 162 GLN GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR SEQRES 11 A 162 ASP VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS SEQRES 12 A 162 GLN ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL SEQRES 13 A 162 GLU ASP LEU GLU GLY GLY SEQRES 1 B 19 ALA GLU B3E ILE GLY ALA B3Q LEU ARG HR7 MET ALA ASP SEQRES 2 B 19 B3D LEU ASN B3A GLN TYR MODRES 4BPI B3E B 89 GLU (3S)-3-AMINOHEXANEDIOIC ACID MODRES 4BPI HR7 B 96 ARG MODRES 4BPI B3D B 100 ASP 3-AMINOPENTANEDIOIC ACID MODRES 4BPI B3A B 103 ALA (3S)-3-AMINOBUTANOIC ACID HET B3E B 89 10 HET B3Q B 93 10 HET HR7 B 96 12 HET B3D B 100 9 HET B3A B 103 6 HET CD A1323 1 HET CD A1324 2 HET CD A1325 1 HET CD A1326 1 HET CD A1327 1 HETNAM B3E (3S)-3-AMINOHEXANEDIOIC ACID HETNAM B3Q (3S)-3,6-DIAMINO-6-OXOHEXANOIC ACID HETNAM HR7 (3S)-3-AMINO-6-[(DIAMINOMETHYLIDENE)AMINO]HEXANOIC ACID HETNAM B3D 3-AMINOPENTANEDIOIC ACID HETNAM B3A (3S)-3-AMINOBUTANOIC ACID HETNAM CD CADMIUM ION HETSYN B3Q (S)-BETA-3-HOMOGLUTAMINE HETSYN HR7 BETA-HOMOARGININE HETSYN B3D BETA-HOMOASPARTATE FORMUL 2 B3E C6 H11 N O4 FORMUL 2 B3Q C6 H12 N2 O3 FORMUL 2 HR7 C7 H16 N4 O2 FORMUL 2 B3D C5 H9 N O4 FORMUL 2 B3A C4 H9 N O2 FORMUL 3 CD 5(CD 2+) FORMUL 8 HOH *17(H2 O) HELIX 1 1 ASP A 172 THR A 191 1 20 HELIX 2 2 ALA A 204 HIS A 224 1 21 HELIX 3 3 HIS A 224 LEU A 235 1 12 HELIX 4 4 VAL A 243 PHE A 254 1 12 HELIX 5 5 SER A 255 GLY A 257 5 3 HELIX 6 6 ASN A 260 ASN A 282 1 23 HELIX 7 7 ILE A 287 GLN A 309 1 23 HELIX 8 8 ARG A 310 PHE A 319 1 10 HELIX 9 9 GLU B 88 GLN B 104 1 17 LINK C GLU B 88 N B3E B 89 1555 1555 1.33 LINK C B3E B 89 N ILE B 90 1555 1555 1.33 LINK C ALA B 92 N B3Q B 93 1555 1555 1.33 LINK C B3Q B 93 N LEU B 94 1555 1555 1.33 LINK C ARG B 95 N HR7 B 96 1555 1555 1.33 LINK C HR7 B 96 N MET B 97 1555 1555 1.32 LINK C ASP B 99 N B3D B 100 1555 1555 1.33 LINK C B3D B 100 N LEU B 101 1555 1555 1.33 LINK C ASN B 102 N B3A B 103 1555 1555 1.33 LINK C B3A B 103 N GLN B 104 1555 1555 1.33 LINK O ASP A 236 CD CD A1326 1555 1555 2.54 LINK O ILE A 237 CD CD A1326 1555 1555 2.52 LINK OE1 GLU A 240 CD B CD A1324 1555 1555 2.38 LINK NE2 HIS A 252 CD CD A1325 1555 1555 2.25 LINK ND1 HIS A 277 CD CD A1323 1555 1555 2.35 LINK NE2 HIS A 277 CD CD A1326 1555 1555 2.52 LINK SG CYS A 286 CD A CD A1324 4555 1555 3.03 LINK SG CYS A 286 CD A CD A1324 1555 1555 2.97 LINK SG CYS A 286 CD B CD A1324 1555 1555 3.00 LINK OE1 GLU A 288 CD A CD A1324 4555 1555 2.30 LINK OE2 GLU A 288 CD A CD A1324 4555 1555 2.10 LINK OD2 ASP A 304 CD CD A1325 5555 1555 2.50 LINK OD1 ASP A 304 CD CD A1325 5555 1555 2.32 LINK CD CD A1323 O HOH A2006 1555 1555 2.34 LINK CD CD A1323 OE1 B3D B 100 1555 5445 2.59 LINK CD CD A1323 OE2 B3D B 100 1555 5445 2.70 LINK CD CD A1323 OE2 B3D B 100 5545 1555 2.70 LINK CD CD A1323 OE1 B3D B 100 5545 1555 2.59 LINK CD A CD A1324 O HOH A2015 1555 1555 2.36 LINK CD A CD A1324 O HOH A2016 1555 1555 2.22 LINK CD B CD A1324 O HOH A2016 1555 1555 2.76 LINK CD CD A1325 OF1 B3E B 89 1555 1555 2.45 LINK CD CD A1325 OF2 B3E B 89 1555 1555 2.39 LINK CD CD A1327 O HOH A2017 1555 1555 2.91 LINK CD CD A1327 OE2 GLU B 88 1555 5555 3.03 SITE 1 AC1 3 HIS A 277 HOH A2006 B3D B 100 SITE 1 AC2 4 CYS A 286 GLU A 288 HOH A2015 HOH A2016 SITE 1 AC3 3 HIS A 252 ASP A 304 B3E B 89 SITE 1 AC4 3 ASP A 236 ILE A 237 HIS A 277 SITE 1 AC5 1 HOH A2017 CRYST1 53.780 53.780 93.965 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018594 0.010735 0.000000 0.00000 SCALE2 0.000000 0.021471 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010642 0.00000