PDB Short entry for 4BSJ HEADER TRANSFERASE 10-JUN-13 4BSJ TITLE CRYSTAL STRUCTURE OF VEGFR-3 EXTRACELLULAR DOMAINS D4-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAINS 4 AND 5 (D4-5), RESIDUES 330-553; COMPND 5 SYNONYM: VEGFR-3, FMS-LIKE TYROSINE KINASE 4, FLT-4, TYROSINE-PROTEIN COMPND 6 KINASE RECEPTOR FLT4, VEGFR-3; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS TRANSFERASE, LYMPHANGIOGENESIS, ANGIOGENESIS, VASCULAR, IG DOMAIN, KEYWDS 2 GLYCOPROTEIN, RECEPTOR TYROSINE KINASE, DIMERIZATION EXPDTA X-RAY DIFFRACTION AUTHOR V.-M.LEPPANEN,D.TVOROGOV,K.KISKO,A.E.PROTA,M.JELTSCH,A.ANISIMOV, AUTHOR 2 S.MARKOVIC-MUELLER,E.STUTTFELD,K.N.GOLDIE,K.BALLMER-HOFER,K.ALITALO REVDAT 6 29-JUL-20 4BSJ 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 24-APR-19 4BSJ 1 SOURCE REVDAT 4 30-JAN-19 4BSJ 1 REMARK REVDAT 3 11-APR-18 4BSJ 1 REMARK HELIX SHEET LINK REVDAT 3 2 1 ATOM REVDAT 2 21-AUG-13 4BSJ 1 JRNL REVDAT 1 31-JUL-13 4BSJ 0 JRNL AUTH V.-M.LEPPANEN,D.TVOROGOV,K.KISKO,A.E.PROTA,M.JELTSCH, JRNL AUTH 2 A.ANISIMOV,S.MARKOVIC-MUELLER,E.STUTTFELD,K.N.GOLDIE, JRNL AUTH 3 K.BALLMER-HOFER,K.ALITALO JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO VEGFR-3 LIGAND JRNL TITL 2 BINDING AND ACTIVATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 12960 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23878260 JRNL DOI 10.1073/PNAS.1301415110 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4965 - 4.5408 1.00 2881 134 0.1825 0.2421 REMARK 3 2 4.5408 - 3.6050 1.00 2790 140 0.1925 0.2190 REMARK 3 3 3.6050 - 3.1496 1.00 2738 172 0.2291 0.2623 REMARK 3 4 3.1496 - 2.8617 1.00 2746 155 0.2642 0.3149 REMARK 3 5 2.8617 - 2.6567 1.00 2746 135 0.2964 0.3072 REMARK 3 6 2.6567 - 2.5000 1.00 2746 142 0.3115 0.3380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1753 REMARK 3 ANGLE : 1.021 2396 REMARK 3 CHIRALITY : 0.066 274 REMARK 3 PLANARITY : 0.004 297 REMARK 3 DIHEDRAL : 13.566 633 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AN INITIAL MODEL WAS BUILT WITH ARPWARP REMARK 3 AND REFINED WITH REFMAC. RESIDUES 470-483 AND SIDECHAINS OF REMARK 3 RESIDUES 328, 329, 469, 485 AND 487 ARE DISORDERED AND WERE REMARK 3 OMITTED FROM THE FINAL MODEL. REMARK 4 REMARK 4 4BSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1290056514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 1.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298 K, PHOSPHATE BUFFER 0.1 M, PH 7.5 - 8.5, PEG 400 REMARK 280 25%., PH 8, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.31000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.62000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.62000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 16.31000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 712 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 470 REMARK 465 GLN A 471 REMARK 465 ARG A 472 REMARK 465 SER A 473 REMARK 465 LEU A 474 REMARK 465 ARG A 475 REMARK 465 ARG A 476 REMARK 465 ARG A 477 REMARK 465 GLN A 478 REMARK 465 GLN A 479 REMARK 465 GLN A 480 REMARK 465 ASP A 481 REMARK 465 LEU A 482 REMARK 465 MET A 483 REMARK 465 HIS A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 465 HIS A 558 REMARK 465 HIS A 559 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 328 CG OD1 OD2 REMARK 470 HIS A 329 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 469 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 485 CG CD OE1 NE2 REMARK 470 ARG A 487 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 339 -56.80 -135.39 REMARK 500 HIS A 438 -12.30 71.59 REMARK 500 ASN A 538 -167.60 -125.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 N-ACETYL GLUCOSAMINE (NAG): THE NAG MOIETIES ARE COVALENTLY REMARK 600 LINKED TO ASN411 AND ASN515. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BSK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VEGF-C IN COMPLEX WITH VEGFR-3 DOMAINS D1-2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ASP 328 AND HIS329 ARE A CLONING ARTEFACT AND HIS554 IS REMARK 999 PART OF THE HIS-TAG. RESIDUES 470-483 WERE OMITTED FROM REMARK 999 THE MODEL DUE TO LACK OF ELECTRON DENSITY. DBREF 4BSJ A 330 553 UNP P35916 VGFR3_HUMAN 330 553 SEQADV 4BSJ ASP A 328 UNP P35916 CLONING ARTIFACT SEQADV 4BSJ HIS A 329 UNP P35916 CLONING ARTIFACT SEQADV 4BSJ HIS A 554 UNP P35916 EXPRESSION TAG SEQADV 4BSJ HIS A 555 UNP P35916 EXPRESSION TAG SEQADV 4BSJ HIS A 556 UNP P35916 EXPRESSION TAG SEQADV 4BSJ HIS A 557 UNP P35916 EXPRESSION TAG SEQADV 4BSJ HIS A 558 UNP P35916 EXPRESSION TAG SEQADV 4BSJ HIS A 559 UNP P35916 EXPRESSION TAG SEQRES 1 A 232 ASP HIS ASN PRO PHE ILE SER VAL GLU TRP LEU LYS GLY SEQRES 2 A 232 PRO ILE LEU GLU ALA THR ALA GLY ASP GLU LEU VAL LYS SEQRES 3 A 232 LEU PRO VAL LYS LEU ALA ALA TYR PRO PRO PRO GLU PHE SEQRES 4 A 232 GLN TRP TYR LYS ASP GLY LYS ALA LEU SER GLY ARG HIS SEQRES 5 A 232 SER PRO HIS ALA LEU VAL LEU LYS GLU VAL THR GLU ALA SEQRES 6 A 232 SER THR GLY THR TYR THR LEU ALA LEU TRP ASN SER ALA SEQRES 7 A 232 ALA GLY LEU ARG ARG ASN ILE SER LEU GLU LEU VAL VAL SEQRES 8 A 232 ASN VAL PRO PRO GLN ILE HIS GLU LYS GLU ALA SER SER SEQRES 9 A 232 PRO SER ILE TYR SER ARG HIS SER ARG GLN ALA LEU THR SEQRES 10 A 232 CYS THR ALA TYR GLY VAL PRO LEU PRO LEU SER ILE GLN SEQRES 11 A 232 TRP HIS TRP ARG PRO TRP THR PRO CYS LYS MET PHE ALA SEQRES 12 A 232 GLN ARG SER LEU ARG ARG ARG GLN GLN GLN ASP LEU MET SEQRES 13 A 232 PRO GLN CYS ARG ASP TRP ARG ALA VAL THR THR GLN ASP SEQRES 14 A 232 ALA VAL ASN PRO ILE GLU SER LEU ASP THR TRP THR GLU SEQRES 15 A 232 PHE VAL GLU GLY LYS ASN LYS THR VAL SER LYS LEU VAL SEQRES 16 A 232 ILE GLN ASN ALA ASN VAL SER ALA MET TYR LYS CYS VAL SEQRES 17 A 232 VAL SER ASN LYS VAL GLY GLN ASP GLU ARG LEU ILE TYR SEQRES 18 A 232 PHE TYR VAL THR THR HIS HIS HIS HIS HIS HIS MODRES 4BSJ ASN A 411 ASN GLYCOSYLATION SITE MODRES 4BSJ ASN A 515 ASN GLYCOSYLATION SITE HET NAG A 601 14 HET NAG A 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 4 HOH *21(H2 O) HELIX 1 AA1 THR A 390 THR A 394 5 5 HELIX 2 AA2 GLU A 426 ALA A 429 5 4 SHEET 1 AA1 3 PHE A 332 TRP A 337 0 SHEET 2 AA1 3 GLU A 350 TYR A 361 -1 O LYS A 357 N GLU A 336 SHEET 3 AA1 3 ALA A 383 GLU A 388 -1 O LEU A 386 N VAL A 352 SHEET 1 AA2 5 ILE A 342 THR A 346 0 SHEET 2 AA2 5 LEU A 408 ILE A 424 1 O GLU A 415 N LEU A 343 SHEET 3 AA2 5 GLY A 395 ASN A 403 -1 N TYR A 397 O LEU A 414 SHEET 4 AA2 5 GLU A 365 LYS A 370 -1 N GLN A 367 O ALA A 400 SHEET 5 AA2 5 LYS A 373 ALA A 374 -1 O LYS A 373 N LYS A 370 SHEET 1 AA3 5 ILE A 342 THR A 346 0 SHEET 2 AA3 5 LEU A 408 ILE A 424 1 O GLU A 415 N LEU A 343 SHEET 3 AA3 5 GLN A 441 VAL A 450 -1 O VAL A 450 N VAL A 420 SHEET 4 AA3 5 LYS A 514 ILE A 523 -1 O THR A 517 N ALA A 447 SHEET 5 AA3 5 ILE A 501 VAL A 511 -1 N VAL A 511 O LYS A 514 SHEET 1 AA4 2 TYR A 435 SER A 436 0 SHEET 2 AA4 2 VAL A 551 THR A 552 1 O THR A 552 N TYR A 435 SHEET 1 AA5 4 ARG A 490 ALA A 491 0 SHEET 2 AA5 4 GLN A 457 PRO A 462 -1 N TRP A 460 O ARG A 490 SHEET 3 AA5 4 ALA A 530 ASN A 538 -1 O MET A 531 N ARG A 461 SHEET 4 AA5 4 GLY A 541 PHE A 549 -1 O ILE A 547 N TYR A 532 SSBOND 1 CYS A 445 CYS A 534 1555 1555 2.03 SSBOND 2 CYS A 466 CYS A 486 1555 1555 2.04 LINK ND2 ASN A 411 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN A 515 C1 NAG A 602 1555 1555 1.44 CISPEP 1 GLY A 340 PRO A 341 0 -7.80 CISPEP 2 TYR A 361 PRO A 362 0 -5.77 CISPEP 3 VAL A 450 PRO A 451 0 -1.25 CRYST1 133.340 133.340 48.930 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007500 0.004330 0.000000 0.00000 SCALE2 0.000000 0.008660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020437 0.00000