PDB Short entry for 4C36 HEADER TRANSFERASE/INHIBITOR 21-AUG-13 4C36 TITLE PKA-S6K1 CHIMERA WITH COMPOUND 15E (CCT147581) BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: PKA-S6K1 CHIMERA; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA; COMPND 11 CHAIN: I; COMPND 12 FRAGMENT: RESIDUES 6-25; COMPND 13 SYNONYM: PKI-ALPHA; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 11 ORGANISM_COMMON: BOVINE; SOURCE 12 ORGANISM_TAXID: 9913 KEYWDS TRANSFERASE-INHIBITOR COMPLEX, CHIMERA, S6K1 EXPDTA X-RAY DIFFRACTION AUTHOR S.COUTY,I.M.WESTWOOD,A.KALUSA,C.CANO,J.TRAVERS,K.BOXALL,C.L.CHOW, AUTHOR 2 S.BURNS,J.SCHMITT,L.PICKARD,C.BARILLARI,P.C.MCANDREW,P.A.CLARKE, AUTHOR 3 S.LINARDOPOULOS,R.J.GRIFFIN,G.W.AHERNE,F.I.RAYNAUD,P.WORKMAN, AUTHOR 4 K.JONES,R.L.M.VAN MONTFORT REVDAT 4 20-DEC-23 4C36 1 REMARK REVDAT 3 09-OCT-19 4C36 1 JRNL LINK REVDAT 2 20-NOV-13 4C36 1 JRNL REVDAT 1 09-OCT-13 4C36 0 JRNL AUTH S.COUTY,I.M.WESTWOOD,A.KALUSA,C.CANO,J.TRAVERS,K.BOXALL, JRNL AUTH 2 C.L.CHOW,S.BURNS,J.SCHMITT,L.PICKARD,C.BARILLARI, JRNL AUTH 3 P.C.MCANDREW,P.A.CLARKE,S.LINARDOPOULOS,R.J.GRIFFIN, JRNL AUTH 4 G.W.AHERNE,F.I.RAYNAUD,P.WORKMAN,K.JONES,R.L.VAN MONTFORT JRNL TITL THE DISCOVERY OF POTENT RIBOSOMAL S6 KINASE INHIBITORS BY JRNL TITL 2 HIGH-THROUGHPUT SCREENING AND STRUCTURE-GUIDED DRUG DESIGN. JRNL REF ONCOTARGET V. 4 1647 2013 JRNL REFN ESSN 1949-2553 JRNL PMID 24072592 JRNL DOI 10.18632/ONCOTARGET.1255 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31409 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1582 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.04 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2846 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1874 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2713 REMARK 3 BIN R VALUE (WORKING SET) : 0.1844 REMARK 3 BIN FREE R VALUE : 0.2527 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.67 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2883 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.92960 REMARK 3 B22 (A**2) : -3.45110 REMARK 3 B33 (A**2) : 5.38070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.145 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.127 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.133 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.123 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3043 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4135 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1040 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 68 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 468 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3043 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 384 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3812 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.94 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.88 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.99 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|15 - A|34 } REMARK 3 ORIGIN FOR THE GROUP (A): -39.2806 -1.2663 18.5383 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.2845 REMARK 3 T33: 0.1590 T12: 0.0976 REMARK 3 T13: 0.1042 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.4028 L22: 5.8704 REMARK 3 L33: 1.7298 L12: -0.7463 REMARK 3 L13: -0.4029 L23: -1.6497 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: -0.0737 S13: 0.1750 REMARK 3 S21: 0.5405 S22: 0.2465 S23: 0.4532 REMARK 3 S31: -0.4141 S32: -0.9114 S33: -0.2417 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|35 - A|72 } REMARK 3 ORIGIN FOR THE GROUP (A): -33.4323 -20.2475 -1.7202 REMARK 3 T TENSOR REMARK 3 T11: 0.1335 T22: 0.1409 REMARK 3 T33: 0.1698 T12: -0.0662 REMARK 3 T13: -0.0142 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 2.7393 L22: 1.8142 REMARK 3 L33: 4.8844 L12: 0.0118 REMARK 3 L13: -0.7441 L23: 0.2139 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: 0.1336 S13: -0.1502 REMARK 3 S21: -0.1957 S22: 0.0084 S23: 0.0539 REMARK 3 S31: 0.4079 S32: -0.1332 S33: -0.0489 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|73 - A|180 } REMARK 3 ORIGIN FOR THE GROUP (A): -29.2033 -5.1416 2.1535 REMARK 3 T TENSOR REMARK 3 T11: 0.0588 T22: 0.0912 REMARK 3 T33: 0.0758 T12: 0.0104 REMARK 3 T13: -0.0003 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.7754 L22: 0.9966 REMARK 3 L33: 1.7234 L12: 0.2785 REMARK 3 L13: -0.0542 L23: -0.5292 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0639 S13: -0.0117 REMARK 3 S21: -0.0337 S22: 0.0459 S23: 0.1287 REMARK 3 S31: -0.0759 S32: -0.2053 S33: -0.0357 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|181 - A|254 } REMARK 3 ORIGIN FOR THE GROUP (A): -17.5461 4.1972 4.3026 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.1103 REMARK 3 T33: 0.0964 T12: -0.0042 REMARK 3 T13: -0.0037 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.5874 L22: 0.8487 REMARK 3 L33: 1.6167 L12: 0.2607 REMARK 3 L13: -0.0271 L23: -0.8038 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.0098 S13: 0.0985 REMARK 3 S21: 0.0674 S22: -0.1097 S23: 0.0028 REMARK 3 S31: -0.2660 S32: 0.1369 S33: 0.0772 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|255 - A|317 } REMARK 3 ORIGIN FOR THE GROUP (A): -28.8849 15.5601 1.3071 REMARK 3 T TENSOR REMARK 3 T11: 0.2763 T22: 0.0260 REMARK 3 T33: 0.1417 T12: 0.0870 REMARK 3 T13: 0.0215 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.2997 L22: 1.6055 REMARK 3 L33: 2.5628 L12: 0.0578 REMARK 3 L13: 0.2246 L23: -0.6050 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.0342 S13: 0.4166 REMARK 3 S21: 0.1250 S22: 0.0380 S23: 0.1485 REMARK 3 S31: -0.7077 S32: -0.1919 S33: -0.0445 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|318 - A|350 } REMARK 3 ORIGIN FOR THE GROUP (A): -26.2858 -20.2652 -2.1521 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.0926 REMARK 3 T33: 0.1000 T12: -0.0271 REMARK 3 T13: 0.0667 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 1.5375 L22: 1.8022 REMARK 3 L33: 4.1850 L12: 0.3072 REMARK 3 L13: 1.2311 L23: -0.4311 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.2101 S13: -0.1822 REMARK 3 S21: -0.2093 S22: 0.0050 S23: -0.1382 REMARK 3 S31: 0.4455 S32: 0.1483 S33: -0.0047 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { I|5 - I|17 } REMARK 3 ORIGIN FOR THE GROUP (A): -13.1006 5.1390 -14.2918 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.2038 REMARK 3 T33: 0.0949 T12: -0.0241 REMARK 3 T13: 0.0021 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.7565 L22: 1.7646 REMARK 3 L33: 4.2110 L12: -0.1655 REMARK 3 L13: -1.2373 L23: -2.8357 REMARK 3 S TENSOR REMARK 3 S11: 0.0892 S12: 0.0936 S13: 0.0477 REMARK 3 S21: 0.0092 S22: -0.0800 S23: 0.1381 REMARK 3 S31: 0.0115 S32: 0.0670 S33: -0.0092 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { I|18 - I|23 } REMARK 3 ORIGIN FOR THE GROUP (A): -16.0939 -5.4038 -1.5173 REMARK 3 T TENSOR REMARK 3 T11: 0.2749 T22: 0.1483 REMARK 3 T33: 0.1480 T12: 0.0179 REMARK 3 T13: -0.0038 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 2.4050 L22: 1.0381 REMARK 3 L33: 1.2502 L12: -0.1179 REMARK 3 L13: -0.3831 L23: 0.6848 REMARK 3 S TENSOR REMARK 3 S11: -0.1324 S12: 0.0237 S13: -0.5476 REMARK 3 S21: 0.1511 S22: -0.0364 S23: -0.2161 REMARK 3 S31: 0.6527 S32: -0.1250 S33: 0.1689 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4C36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1290058140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 55.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4C33 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 MG/ML PROTEIN IN 25MM MES-BIS-TRIS REMARK 280 PH 6.5, 75MM LICL, 0.1MM EDTA, 1MM MEGA-8, 1MM DTT AND 1MM PKI REMARK 280 PEPTIDE MIXED 1:1 WITH 8-16% AQUEOUS METHANOL, PH 6.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.28000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.19000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.19000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.28000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SEP A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 16 CD CE NZ REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 28 CD CE NZ REMARK 470 SER A 53 OG REMARK 470 GLU A 64 CD OE1 OE2 REMARK 470 LYS A 83 CE NZ REMARK 470 LYS A 105 CE NZ REMARK 470 GLN A 177 CD OE1 NE2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 LYS A 309 CD CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 LYS A 319 CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 HIS I 23 CG ND1 CD2 CE1 NE2 REMARK 470 ASP I 24 CA C O CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2117 O HOH A 2218 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 46 -60.93 -107.23 REMARK 500 ASP A 166 38.42 -141.81 REMARK 500 ASP A 184 90.41 60.12 REMARK 500 ASP A 184 90.41 69.95 REMARK 500 LEU A 273 49.41 -86.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2061 DISTANCE = 6.66 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZO9 A 1351 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C33 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA APO REMARK 900 RELATED ID: 4C34 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA WITH STAUROSPORINE BOUND REMARK 900 RELATED ID: 4C35 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA WITH COMPOUND 1 (NU1085) BOUND REMARK 900 RELATED ID: 4C37 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA WITH COMPOUND 21A (CCT196539) BOUND REMARK 900 RELATED ID: 4C38 RELATED DB: PDB REMARK 900 PKA-S6K1 CHIMERA WITH COMPOUND 21E (CCT239066) BOUND REMARK 999 REMARK 999 SEQUENCE REMARK 999 PKA-S6K1 CHIMERA MUTATIONS ARE F54Y, M120L, V123L, L173M REMARK 999 AND Q181K DBREF 4C36 A 0 350 UNP P00517 KAPCA_BOVIN 1 351 DBREF 4C36 I 5 24 UNP Q3SX13 IPKA_BOVIN 6 25 SEQADV 4C36 TYR A 54 UNP P00517 PHE 55 ENGINEERED MUTATION SEQADV 4C36 LEU A 120 UNP P00517 MET 121 ENGINEERED MUTATION SEQADV 4C36 LEU A 123 UNP P00517 VAL 124 ENGINEERED MUTATION SEQADV 4C36 MET A 173 UNP P00517 LEU 174 ENGINEERED MUTATION SEQADV 4C36 LYS A 181 UNP P00517 GLN 182 ENGINEERED MUTATION SEQRES 1 A 351 MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP GLU GLN SEQRES 2 A 351 GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS GLU ASP SEQRES 3 A 351 PHE LEU LYS LYS TRP GLU ASN PRO ALA GLN ASN THR ALA SEQRES 4 A 351 HIS LEU ASP GLN PHE GLU ARG ILE LYS THR LEU GLY THR SEQRES 5 A 351 GLY SER TYR GLY ARG VAL MET LEU VAL LYS HIS MET GLU SEQRES 6 A 351 THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP LYS GLN SEQRES 7 A 351 LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR LEU ASN SEQRES 8 A 351 GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO PHE LEU SEQRES 9 A 351 VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER ASN LEU SEQRES 10 A 351 TYR MET VAL LEU GLU TYR LEU PRO GLY GLY GLU MET PHE SEQRES 11 A 351 SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU PRO HIS SEQRES 12 A 351 ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR PHE GLU SEQRES 13 A 351 TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP LEU LYS SEQRES 14 A 351 PRO GLU ASN LEU MET ILE ASP GLN GLN GLY TYR ILE LYS SEQRES 15 A 351 VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS GLY ARG SEQRES 16 A 351 THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU ALA PRO SEQRES 17 A 351 GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA VAL ASP SEQRES 18 A 351 TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET ALA ALA SEQRES 19 A 351 GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE GLN ILE SEQRES 20 A 351 TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE PRO SER SEQRES 21 A 351 HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG ASN LEU SEQRES 22 A 351 LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN LEU LYS SEQRES 23 A 351 ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP PHE ALA SEQRES 24 A 351 THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS VAL GLU SEQRES 25 A 351 ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY ASP THR SEQRES 26 A 351 SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE ARG VAL SEQRES 27 A 351 SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE SER GLU PHE SEQRES 1 I 20 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 I 20 ARG ARG ASN ALA ILE HIS ASP MODRES 4C36 SEP A 139 SER PHOSPHOSERINE MODRES 4C36 TPO A 197 THR PHOSPHOTHREONINE MODRES 4C36 SEP A 338 SER PHOSPHOSERINE HET SEP A 139 10 HET TPO A 197 11 HET SEP A 338 10 HET ZO9 A1351 19 HET MOH I1025 2 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ZO9 4-[1-(CYCLOPROPYLMETHYL)-1H-BENZIMIDAZOL-2-YL]-1,2,5- HETNAM 2 ZO9 OXADIAZOL-3-AMINE HETNAM MOH METHANOL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ZO9 C13 H13 N5 O FORMUL 4 MOH C H4 O FORMUL 5 HOH *377(H2 O) HELIX 1 1 GLU A 13 ASN A 32 1 20 HELIX 2 2 HIS A 39 ASP A 41 5 3 HELIX 3 3 LYS A 76 LEU A 82 1 7 HELIX 4 4 GLN A 84 VAL A 98 1 15 HELIX 5 5 GLU A 127 GLY A 136 1 10 HELIX 6 6 SEP A 139 LEU A 160 1 22 HELIX 7 7 LYS A 168 GLU A 170 5 3 HELIX 8 8 THR A 201 LEU A 205 5 5 HELIX 9 9 ALA A 206 LEU A 211 1 6 HELIX 10 10 LYS A 217 GLY A 234 1 18 HELIX 11 11 GLN A 242 SER A 252 1 11 HELIX 12 12 SER A 262 LEU A 273 1 12 HELIX 13 13 VAL A 288 ASN A 293 1 6 HELIX 14 14 HIS A 294 ALA A 298 5 5 HELIX 15 15 ASP A 301 GLN A 307 1 7 HELIX 16 16 THR I 5 ALA I 12 1 8 SHEET 1 AA 5 PHE A 43 GLY A 52 0 SHEET 2 AA 5 GLY A 55 HIS A 62 -1 O GLY A 55 N GLY A 52 SHEET 3 AA 5 HIS A 68 ASP A 75 -1 O TYR A 69 N VAL A 60 SHEET 4 AA 5 ASN A 115 GLU A 121 -1 O LEU A 116 N LEU A 74 SHEET 5 AA 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AB 2 LEU A 162 ILE A 163 0 SHEET 2 AB 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AC 2 LEU A 172 ILE A 174 0 SHEET 2 AC 2 ILE A 180 VAL A 182 -1 O LYS A 181 N MET A 173 LINK C PHE A 138 N SEP A 139 1555 1555 1.34 LINK C SEP A 139 N GLU A 140 1555 1555 1.34 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.34 SITE 1 AC1 11 LEU A 49 TYR A 54 ALA A 70 VAL A 104 SITE 2 AC1 11 LEU A 120 GLU A 121 TYR A 122 LEU A 123 SITE 3 AC1 11 MET A 173 ASP A 184 PHE A 327 CRYST1 72.560 75.850 80.380 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013782 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012441 0.00000