PDB Short entry for 4C5G HEADER TRANSCRIPTION 11-SEP-13 4C5G TITLE CRYSTAL STRUCTURE OF THE MINIMAL PHO-SFMBT COMPLEX (P6122 SPACEGROUP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN SFMBT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 4MBT, RESIDUES 531-980; COMPND 5 SYNONYM: SCM-LIKE WITH FOUR MBT DOMAIN-CONTAINING PROTEIN 1, DSFMBT; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POLYCOMB PROTEIN PHO; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: SPACER, RESIDUES 145-172; COMPND 11 SYNONYM: PROTEIN PLEIOHOMEOTIC, TRANSCRIPTION FACTOR YY1 HOMOLOG; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 11 ORGANISM_COMMON: FRUIT FLY; SOURCE 12 ORGANISM_TAXID: 7227; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.ALFIERI,S.GLATT,C.W.MUELLER REVDAT 2 20-DEC-23 4C5G 1 REMARK REVDAT 1 13-NOV-13 4C5G 0 JRNL AUTH C.ALFIERI,M.C.GAMBETTA,R.MATOS,S.GLATT,P.SEHR,S.FRATERMAN, JRNL AUTH 2 M.WILM,J.MUELLER,C.W.MUELLER JRNL TITL STRUCTURAL BASIS FOR TARGETING THE CHROMATIN REPRESSOR SFMBT JRNL TITL 2 TO POLYCOMB RESPONSE ELEMENTS JRNL REF GENES DEV. V. 27 2367 2013 JRNL REFN ISSN 0890-9369 JRNL PMID 24186981 JRNL DOI 10.1101/GAD.226621.113 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 41849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2118 - 5.1771 1.00 2893 153 0.1866 0.2032 REMARK 3 2 5.1771 - 4.1100 1.00 2731 144 0.1531 0.1828 REMARK 3 3 4.1100 - 3.5906 1.00 2706 142 0.1688 0.1725 REMARK 3 4 3.5906 - 3.2624 1.00 2669 139 0.1786 0.2118 REMARK 3 5 3.2624 - 3.0286 1.00 2662 140 0.2068 0.2551 REMARK 3 6 3.0286 - 2.8501 1.00 2650 139 0.2260 0.2794 REMARK 3 7 2.8501 - 2.7074 1.00 2639 139 0.2219 0.2552 REMARK 3 8 2.7074 - 2.5895 1.00 2632 139 0.2296 0.2974 REMARK 3 9 2.5895 - 2.4899 0.99 2624 137 0.2455 0.2919 REMARK 3 10 2.4899 - 2.4039 0.99 2609 138 0.2599 0.3081 REMARK 3 11 2.4039 - 2.3288 0.99 2608 136 0.2712 0.3552 REMARK 3 12 2.3288 - 2.2622 0.99 2604 138 0.2879 0.3500 REMARK 3 13 2.2622 - 2.2027 0.99 2589 136 0.3196 0.3461 REMARK 3 14 2.2027 - 2.1489 0.99 2606 136 0.3162 0.3837 REMARK 3 15 2.1489 - 2.1001 0.98 2537 134 0.3508 0.3686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3853 REMARK 3 ANGLE : 0.686 5241 REMARK 3 CHIRALITY : 0.050 559 REMARK 3 PLANARITY : 0.003 675 REMARK 3 DIHEDRAL : 10.312 1371 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 533 THROUGH 586 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1318 -60.3806 -20.0355 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.1413 REMARK 3 T33: 0.2436 T12: -0.0299 REMARK 3 T13: 0.0127 T23: -0.0827 REMARK 3 L TENSOR REMARK 3 L11: 1.9815 L22: 1.8777 REMARK 3 L33: 2.3044 L12: 0.1879 REMARK 3 L13: -0.8244 L23: -0.2221 REMARK 3 S TENSOR REMARK 3 S11: -0.1399 S12: 0.3234 S13: -0.5276 REMARK 3 S21: 0.0355 S22: 0.0944 S23: -0.1530 REMARK 3 S31: 0.2142 S32: -0.2380 S33: 0.0780 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 587 THROUGH 674 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6590 -57.9659 -30.3576 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.2254 REMARK 3 T33: 0.2000 T12: -0.0355 REMARK 3 T13: 0.0561 T23: -0.0851 REMARK 3 L TENSOR REMARK 3 L11: 1.9702 L22: 1.0419 REMARK 3 L33: 2.1540 L12: -0.0214 REMARK 3 L13: -0.0991 L23: -0.4681 REMARK 3 S TENSOR REMARK 3 S11: -0.1765 S12: 0.3874 S13: -0.3242 REMARK 3 S21: -0.1041 S22: 0.0823 S23: -0.1852 REMARK 3 S31: 0.0406 S32: 0.1387 S33: 0.0711 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 675 THROUGH 823 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2353 -46.2264 9.1195 REMARK 3 T TENSOR REMARK 3 T11: 0.3198 T22: 0.2931 REMARK 3 T33: 0.1499 T12: -0.0547 REMARK 3 T13: 0.0147 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 2.4597 L22: 0.7623 REMARK 3 L33: 3.0344 L12: -0.1783 REMARK 3 L13: -0.5567 L23: 0.7135 REMARK 3 S TENSOR REMARK 3 S11: 0.1366 S12: -0.5259 S13: 0.2513 REMARK 3 S21: 0.1076 S22: -0.0233 S23: 0.0742 REMARK 3 S31: -0.6636 S32: 0.1584 S33: -0.1372 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 824 THROUGH 977 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3669 -59.5614 1.3002 REMARK 3 T TENSOR REMARK 3 T11: 0.2273 T22: 0.3849 REMARK 3 T33: 0.1748 T12: -0.0088 REMARK 3 T13: 0.0587 T23: 0.1215 REMARK 3 L TENSOR REMARK 3 L11: 2.3424 L22: 0.9336 REMARK 3 L33: 1.9677 L12: 0.4687 REMARK 3 L13: 0.3457 L23: -0.1021 REMARK 3 S TENSOR REMARK 3 S11: -0.1453 S12: -0.4255 S13: -0.2934 REMARK 3 S21: 0.1875 S22: 0.1312 S23: 0.1538 REMARK 3 S31: 0.0584 S32: -0.6157 S33: 0.0613 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 141 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8783 -43.6310 -30.6999 REMARK 3 T TENSOR REMARK 3 T11: 0.5594 T22: 1.0571 REMARK 3 T33: 0.6875 T12: 0.4153 REMARK 3 T13: 0.1052 T23: 0.2011 REMARK 3 L TENSOR REMARK 3 L11: 2.8674 L22: 0.3941 REMARK 3 L33: 1.8853 L12: 1.0711 REMARK 3 L13: 0.8667 L23: 0.3433 REMARK 3 S TENSOR REMARK 3 S11: -0.1931 S12: -0.0966 S13: 0.1362 REMARK 3 S21: 0.1416 S22: -0.1421 S23: -0.0116 REMARK 3 S31: 0.3205 S32: -0.7193 S33: 0.3170 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 148 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5670 -46.4464 -36.4055 REMARK 3 T TENSOR REMARK 3 T11: 0.1433 T22: 0.4330 REMARK 3 T33: 0.1295 T12: -0.1332 REMARK 3 T13: -0.0013 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 6.2945 L22: 1.7427 REMARK 3 L33: 2.0049 L12: -0.2716 REMARK 3 L13: -1.8356 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.3441 S12: 0.7419 S13: 0.5287 REMARK 3 S21: 0.0037 S22: 0.2350 S23: -0.3966 REMARK 3 S31: -0.1652 S32: 0.3021 S33: -0.1065 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4C5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1290058300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93927 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41850 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 15.60 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENRTY 3H6Z REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.61000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.22000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.41500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 84.02500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.80500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.61000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.22000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 84.02500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.41500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 16.80500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 530 REMARK 465 ASP A 531 REMARK 465 PRO A 532 REMARK 465 ARG A 764 REMARK 465 GLU A 765 REMARK 465 ALA A 766 REMARK 465 MET A 767 REMARK 465 VAL A 978 REMARK 465 ALA A 979 REMARK 465 HIS A 980 REMARK 465 ILE B 171 REMARK 465 SER B 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 545 CG CD OE1 OE2 REMARK 470 SER A 582 OG REMARK 470 ILE A 583 CG1 CG2 CD1 REMARK 470 LYS A 655 CG CD CE NZ REMARK 470 PHE A 722 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 769 CG CD OE1 OE2 REMARK 470 GLU A 772 CG CD OE1 OE2 REMARK 470 ASP A 787 CG OD1 OD2 REMARK 470 SER A 791 OG REMARK 470 ASP A 792 CG OD1 OD2 REMARK 470 LYS A 794 CG CD CE NZ REMARK 470 ASN A 796 CG OD1 ND2 REMARK 470 GLU A 800 CG CD OE1 OE2 REMARK 470 ARG A 877 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 882 CG CD OE1 OE2 REMARK 470 ARG A 886 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 977 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 754 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 579 54.32 -98.37 REMARK 500 ASP A 581 -133.35 -105.94 REMARK 500 SER A 582 35.38 -74.31 REMARK 500 PRO A 592 48.76 -84.51 REMARK 500 ARG A 700 81.80 -162.22 REMARK 500 SER A 797 -87.76 -88.79 REMARK 500 LEU A 824 -157.16 -91.66 REMARK 500 PRO A 921 3.07 -64.86 REMARK 500 SER B 145 -90.00 -96.98 REMARK 500 MET B 166 -166.57 -125.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2190 DISTANCE = 6.24 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C5E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MINIMAL PHO-SFMBT COMPLEX (P21 SPACEGROUP) REMARK 900 RELATED ID: 4C5H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MINIMAL PHO-SFMBT COMPLEX (P3121 REMARK 900 SPACEGROUP) REMARK 900 RELATED ID: 4C5I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MBTD1 YY1 COMPLEX DBREF 4C5G A 531 980 UNP Q9VK33 SMBT_DROME 531 980 DBREF 4C5G B 141 172 UNP Q8ST83 PHO_DROME 145 172 SEQADV 4C5G MET A 530 UNP Q9VK33 EXPRESSION TAG SEQADV 4C5G ALA B 141 UNP Q8ST83 EXPRESSION TAG SEQADV 4C5G GLY B 142 UNP Q8ST83 EXPRESSION TAG SEQADV 4C5G MET B 143 UNP Q8ST83 EXPRESSION TAG SEQADV 4C5G ALA B 144 UNP Q8ST83 EXPRESSION TAG SEQRES 1 A 451 MET ASP PRO THR HIS SER TYR ASP TRP LEU PRO ARG LEU SEQRES 2 A 451 SER LYS GLU ASN PHE ASN ALA ALA PRO VAL THR CYS PHE SEQRES 3 A 451 PRO HIS ALA PRO GLY CYS GLU VAL TRP ASP ASN LEU GLY SEQRES 4 A 451 VAL GLY MET LYS VAL GLU VAL GLU ASN THR ASP CYS ASP SEQRES 5 A 451 SER ILE GLU VAL ILE GLN PRO GLY GLN THR PRO THR SER SEQRES 6 A 451 PHE TRP VAL ALA THR ILE LEU GLU ILE LYS GLY TYR LYS SEQRES 7 A 451 ALA LEU MET SER TYR GLU GLY PHE ASP THR ASP SER HIS SEQRES 8 A 451 ASP PHE TRP VAL ASN LEU CYS ASN ALA GLU VAL HIS SER SEQRES 9 A 451 VAL GLY TRP CYS ALA THR ARG GLY LYS PRO LEU ILE PRO SEQRES 10 A 451 PRO ARG THR ILE GLU HIS LYS TYR LYS ASP TRP LYS ASP SEQRES 11 A 451 PHE LEU VAL GLY ARG LEU SER GLY ALA ARG THR LEU PRO SEQRES 12 A 451 SER ASN PHE TYR ASN LYS ILE ASN ASP SER LEU GLN SER SEQRES 13 A 451 ARG PHE ARG LEU GLY LEU ASN LEU GLU CYS VAL ASP LYS SEQRES 14 A 451 ASP ARG ILE SER GLN VAL ARG LEU ALA THR VAL THR LYS SEQRES 15 A 451 ILE VAL GLY LYS ARG LEU PHE LEU ARG TYR PHE ASP SER SEQRES 16 A 451 ASP ASP GLY PHE TRP CYS HIS GLU ASP SER PRO ILE ILE SEQRES 17 A 451 HIS PRO VAL GLY TRP ALA THR THR VAL GLY HIS ASN LEU SEQRES 18 A 451 ALA ALA PRO GLN ASP TYR LEU GLU ARG MET LEU ALA GLY SEQRES 19 A 451 ARG GLU ALA MET ILE GLU VAL HIS GLU ASP ASP ALA THR SEQRES 20 A 451 ILE GLU LEU PHE LYS MET ASN PHE THR PHE ASP GLU TYR SEQRES 21 A 451 TYR SER ASP GLY LYS THR ASN SER PHE VAL GLU GLY MET SEQRES 22 A 451 LYS LEU GLU ALA VAL ASP PRO LEU ASN LEU SER SER ILE SEQRES 23 A 451 CYS PRO ALA THR VAL MET ALA VAL LEU LYS PHE GLY TYR SEQRES 24 A 451 MET MET ILE ARG ILE ASP SER TYR GLN PRO ASP ALA SER SEQRES 25 A 451 GLY SER ASP TRP PHE CYS TYR HIS GLU LYS SER PRO CYS SEQRES 26 A 451 ILE PHE PRO ALA GLY PHE CYS SER VAL ASN ASN ILE SER SEQRES 27 A 451 VAL THR PRO PRO ASN GLY TYR ASP SER ARG THR PHE THR SEQRES 28 A 451 TRP GLU GLY TYR LEU ARG ASP THR GLY ALA VAL ALA ALA SEQRES 29 A 451 GLY GLN HIS LEU PHE HIS ARG ILE ILE PRO ASP HIS GLY SEQRES 30 A 451 PHE GLU VAL GLY MET SER LEU GLU CYS ALA ASP LEU MET SEQRES 31 A 451 ASP PRO ARG LEU VAL CYS VAL ALA THR VAL ALA ARG VAL SEQRES 32 A 451 VAL GLY ARG LEU LEU LYS VAL HIS PHE ASP GLY TRP THR SEQRES 33 A 451 ASP GLU TYR ASP GLN TRP LEU ASP CYS GLU SER ALA ASP SEQRES 34 A 451 ILE TYR PRO VAL GLY TRP CYS VAL LEU VAL ASN HIS LYS SEQRES 35 A 451 LEU GLU GLY PRO PRO ARG VAL ALA HIS SEQRES 1 B 32 ALA GLY MET ALA SER ARG ARG TRP GLU GLN LYS LEU VAL SEQRES 2 B 32 HIS ILE LYS THR MET GLU GLY GLU PHE SER VAL THR MET SEQRES 3 B 32 TRP ALA SER GLY ILE SER FORMUL 3 HOH *299(H2 O) HELIX 1 1 TRP A 538 SER A 543 1 6 HELIX 2 2 PRO A 551 PHE A 555 5 5 HELIX 3 3 VAL A 563 LEU A 567 5 5 HELIX 4 4 GLY A 635 ARG A 640 1 6 HELIX 5 5 ILE A 650 TYR A 654 5 5 HELIX 6 6 TRP A 657 SER A 666 1 10 HELIX 7 7 ASN A 674 ASP A 681 1 8 HELIX 8 8 GLY A 741 GLY A 747 1 7 HELIX 9 9 PRO A 753 ALA A 762 1 10 HELIX 10 10 THR A 776 PHE A 780 5 5 HELIX 11 11 GLY A 859 ASN A 864 1 6 HELIX 12 12 THR A 880 GLY A 889 1 10 HELIX 13 13 GLY A 894 PHE A 898 5 5 HELIX 14 14 THR A 945 ASP A 949 5 5 HELIX 15 15 GLY A 963 ASN A 969 1 7 SHEET 1 AA 5 PHE A 622 ASN A 625 0 SHEET 2 AA 5 LYS A 607 TYR A 612 -1 O ALA A 608 N VAL A 624 SHEET 3 AA 5 PHE A 595 LYS A 604 -1 O THR A 599 N SER A 611 SHEET 4 AA 5 LYS A 572 GLU A 576 -1 O VAL A 573 N ALA A 598 SHEET 5 AA 5 VAL A 631 HIS A 632 -1 O HIS A 632 N GLU A 574 SHEET 1 AB 4 GLY A 727 HIS A 731 0 SHEET 2 AB 4 ARG A 716 TYR A 721 -1 O LEU A 717 N CYS A 730 SHEET 3 AB 4 ARG A 700 VAL A 713 -1 O THR A 708 N ARG A 720 SHEET 4 AB 4 ASN A 749 ALA A 751 1 O ASN A 749 N VAL A 704 SHEET 1 AC 5 GLY A 727 HIS A 731 0 SHEET 2 AC 5 ARG A 716 TYR A 721 -1 O LEU A 717 N CYS A 730 SHEET 3 AC 5 ARG A 700 VAL A 713 -1 O THR A 708 N ARG A 720 SHEET 4 AC 5 ASN A 692 ASP A 697 -1 O LEU A 693 N ALA A 707 SHEET 5 AC 5 ILE A 737 HIS A 738 -1 O HIS A 738 N GLU A 694 SHEET 1 AD 2 ASN A 749 ALA A 751 0 SHEET 2 AD 2 ARG A 700 VAL A 713 1 O SER A 702 N ASN A 749 SHEET 1 AE 5 PHE A 846 HIS A 849 0 SHEET 2 AE 5 TYR A 828 ILE A 833 -1 O MET A 829 N TYR A 848 SHEET 3 AE 5 ASN A 811 VAL A 823 -1 O THR A 819 N ARG A 832 SHEET 4 AE 5 LYS A 803 ASP A 808 -1 O LEU A 804 N ALA A 818 SHEET 5 AE 5 ILE A 855 PHE A 856 -1 O PHE A 856 N GLU A 805 SHEET 1 AF 4 GLN A 950 ASP A 953 0 SHEET 2 AF 4 LEU A 936 PHE A 941 -1 O LEU A 937 N LEU A 952 SHEET 3 AF 4 VAL A 924 VAL A 933 -1 O THR A 928 N HIS A 940 SHEET 4 AF 4 LEU A 972 GLU A 973 1 O GLU A 973 N VAL A 926 SHEET 1 AG 5 GLN A 950 ASP A 953 0 SHEET 2 AG 5 LEU A 936 PHE A 941 -1 O LEU A 937 N LEU A 952 SHEET 3 AG 5 VAL A 924 VAL A 933 -1 O THR A 928 N HIS A 940 SHEET 4 AG 5 SER A 912 ALA A 916 -1 O LEU A 913 N ALA A 927 SHEET 5 AG 5 ILE A 959 TYR A 960 -1 O TYR A 960 N GLU A 914 SHEET 1 AH 2 LEU A 972 GLU A 973 0 SHEET 2 AH 2 VAL A 924 VAL A 933 1 O VAL A 924 N GLU A 973 SHEET 1 BA 2 TRP B 148 THR B 157 0 SHEET 2 BA 2 GLY B 160 SER B 169 -1 O GLY B 160 N THR B 157 CISPEP 1 GLY B 142 MET B 143 0 8.04 CRYST1 155.100 155.100 100.830 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006447 0.003722 0.000000 0.00000 SCALE2 0.000000 0.007445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009918 0.00000