PDB Short entry for 4CAH HEADER MEMBRANE PROTEIN 08-OCT-13 4CAH TITLE STRUCTURE OF INNER DYSF DOMAIN OF HUMAN DYSFERLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYSFERLIN; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: INNER DYSF DOMAIN, RESIDUES 942-1052; COMPND 5 SYNONYM: DYSTROPHY-ASSOCIATED FER-1-LIKE PROTEIN, FER-1-LIKE PROTEIN COMPND 6 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: MUSCLE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28BSA4; SOURCE 12 OTHER_DETAILS: CDNA PROVIDED BY JAIN FOUNDATION KEYWDS MEMBRANE PROTEIN, MEMBRANE REPAIR, LIMB-GIRDLE MUSCULAR DYSTROPHY, KEYWDS 2 DYSF DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SULA,A.R.COLE,C.YEATS,C.ORENGO,N.H.KEEP REVDAT 2 20-DEC-23 4CAH 1 REMARK REVDAT 1 29-JAN-14 4CAH 0 JRNL AUTH A.SULA,A.R.COLE,C.YEATS,C.ORENGO,N.H.KEEP JRNL TITL CRYSTAL STRUCTURES OF THE HUMAN DYSFERLIN INNER DYSF DOMAIN JRNL REF BMC STRUCT.BIOL. V. 14 3 2014 JRNL REFN ESSN 1472-6807 JRNL PMID 24438169 JRNL DOI 10.1186/1472-6807-14-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.PATEL,R.HARRIS,S.M.GEDDES,E.STREHLE,J.D.WATSON,R.BASHIR, REMARK 1 AUTH 2 K.BUSHBY,P.C.DRISCOLL,N.H.KEEP REMARK 1 TITL SOLUTION STRUCTURE OF THE INNER DYSF DOMAIN OF MYOFERLIN AND REMARK 1 TITL 2 IMPLICATIONS FOR LIMB GIRDLE MUSCULAR DYSTROPHY TYPE 2B. REMARK 1 REF J.MOL.BIOL. V. 379 981 2008 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 18495154 REMARK 1 DOI 10.1016/J.JMB.2008.04.046 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.7283 - 3.0169 1.00 2891 146 0.1663 0.1759 REMARK 3 2 3.0169 - 2.3946 1.00 2784 150 0.1998 0.2105 REMARK 3 3 2.3946 - 2.0919 1.00 2783 125 0.1803 0.1948 REMARK 3 4 2.0919 - 1.9006 1.00 2762 128 0.1932 0.2283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 998 REMARK 3 ANGLE : 1.764 1361 REMARK 3 CHIRALITY : 0.112 129 REMARK 3 PLANARITY : 0.012 176 REMARK 3 DIHEDRAL : 12.931 379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B AND (RESID 943 THROUGH 958 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.6509 -7.7417 25.1078 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.1645 REMARK 3 T33: 0.1086 T12: -0.0284 REMARK 3 T13: -0.0059 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 6.0854 L22: 6.4782 REMARK 3 L33: 5.0487 L12: 4.3403 REMARK 3 L13: -3.9273 L23: -3.7299 REMARK 3 S TENSOR REMARK 3 S11: 0.4784 S12: 0.1039 S13: 0.2353 REMARK 3 S21: 0.8405 S22: -0.1438 S23: 0.1729 REMARK 3 S31: -0.6629 S32: -0.0060 S33: -0.1185 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESID 959 THROUGH 968 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4088 9.8592 14.0012 REMARK 3 T TENSOR REMARK 3 T11: 0.4843 T22: 0.4541 REMARK 3 T33: 0.7402 T12: -0.1917 REMARK 3 T13: 0.0155 T23: 0.1613 REMARK 3 L TENSOR REMARK 3 L11: 5.6990 L22: 5.2342 REMARK 3 L33: 6.1725 L12: -1.2752 REMARK 3 L13: 0.8151 L23: 1.3303 REMARK 3 S TENSOR REMARK 3 S11: 0.2636 S12: -0.3270 S13: 1.0279 REMARK 3 S21: 0.6876 S22: -0.8472 S23: -0.6940 REMARK 3 S31: -1.1438 S32: 1.0463 S33: -0.2327 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 969 THROUGH 985 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5524 3.1349 26.0253 REMARK 3 T TENSOR REMARK 3 T11: 0.8673 T22: 0.4157 REMARK 3 T33: 0.6760 T12: -0.0713 REMARK 3 T13: 0.2246 T23: -0.1028 REMARK 3 L TENSOR REMARK 3 L11: 4.5775 L22: 2.8638 REMARK 3 L33: 4.9198 L12: 2.4497 REMARK 3 L13: -2.1733 L23: -0.6039 REMARK 3 S TENSOR REMARK 3 S11: 1.4379 S12: -0.7558 S13: 1.3155 REMARK 3 S21: 0.9272 S22: -0.5165 S23: 1.2260 REMARK 3 S31: -1.5280 S32: -0.4759 S33: -0.4097 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 1031 THROUGH 1051 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0116 -3.2029 18.7654 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.1317 REMARK 3 T33: 0.1369 T12: -0.0024 REMARK 3 T13: -0.0082 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 3.4853 L22: 6.5938 REMARK 3 L33: 7.3917 L12: 3.3758 REMARK 3 L13: -3.5721 L23: -5.2275 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: 0.0502 S13: 0.0227 REMARK 3 S21: -0.0233 S22: -0.0587 S23: -0.1357 REMARK 3 S31: -0.1260 S32: -0.0712 S33: 0.1256 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 1006 THROUGH 1030 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5978 5.7472 10.2790 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.3186 REMARK 3 T33: 0.2014 T12: 0.0479 REMARK 3 T13: -0.0116 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 7.9895 L22: 2.2452 REMARK 3 L33: 7.0199 L12: 0.2503 REMARK 3 L13: 1.5842 L23: -1.9903 REMARK 3 S TENSOR REMARK 3 S11: -0.1343 S12: -0.0541 S13: 0.4388 REMARK 3 S21: -0.3031 S22: 0.2501 S23: 0.3786 REMARK 3 S31: -0.5861 S32: -0.8757 S33: -0.0732 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 986 THROUGH 1005) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9927 -10.6648 26.3089 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.1598 REMARK 3 T33: 0.1495 T12: 0.0094 REMARK 3 T13: -0.0152 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 4.8632 L22: 1.2927 REMARK 3 L33: 8.9721 L12: 1.3985 REMARK 3 L13: -4.5167 L23: -1.2734 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: -0.4185 S13: 0.0274 REMARK 3 S21: 0.1555 S22: -0.1126 S23: -0.0174 REMARK 3 S31: -0.1174 S32: 0.4112 S33: 0.0472 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1290058656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97718 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11803 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 53.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: PDB ENTRY 2K2O REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 16% PEG 8000, 20% GLYCEROL, 0.2M NABR, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.97650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.97650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.97650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.97650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.97650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.97650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 37.97650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 37.97650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 37.97650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 37.97650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 37.97650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 37.97650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 37.97650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 37.97650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 37.97650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 37.97650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 37.97650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 37.97650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 941 REMARK 465 MET B 942 REMARK 465 GLN B 1052 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B1020 C - N - CA ANGL. DEV. = -14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 970 -77.94 -55.18 REMARK 500 ASN B 971 -26.16 86.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 1019 PRO B 1020 119.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2052 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2053 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2054 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CAI RELATED DB: PDB REMARK 900 STRUCTURE OF INNER DYSF DOMAIN OF HUMAN DYSFERLIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 ONLY A DOMAIN OF THIS PROTEIN 942-1052 DBREF 4CAH B 942 1052 UNP O75923 DYSF_HUMAN 942 1052 SEQADV 4CAH SER B 941 UNP O75923 EXPRESSION TAG SEQRES 1 B 112 SER MET ASP ALA GLY HIS LEU SER PHE VAL GLU GLU VAL SEQRES 2 B 112 PHE GLU ASN GLN THR ARG LEU PRO GLY GLY GLN TRP ILE SEQRES 3 B 112 TYR MET SER ASP ASN TYR THR ASP VAL ASN GLY GLU LYS SEQRES 4 B 112 VAL LEU PRO LYS ASP ASP ILE GLU CYS PRO LEU GLY TRP SEQRES 5 B 112 LYS TRP GLU ASP GLU GLU TRP SER THR ASP LEU ASN ARG SEQRES 6 B 112 ALA VAL ASP GLU GLN GLY TRP GLU TYR SER ILE THR ILE SEQRES 7 B 112 PRO PRO GLU ARG LYS PRO LYS HIS TRP VAL PRO ALA GLU SEQRES 8 B 112 LYS MET TYR TYR THR HIS ARG ARG ARG ARG TRP VAL ARG SEQRES 9 B 112 LEU ARG ARG ARG ASP LEU SER GLN HET PO4 B2052 5 HET PO4 B2053 5 HET PO4 B2054 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 3(O4 P 3-) FORMUL 5 HOH *71(H2 O) HELIX 1 1 PRO B 982 ILE B 986 5 5 SHEET 1 BA 4 ILE B 966 THR B 973 0 SHEET 2 BA 4 HIS B 946 THR B 958 -1 O PHE B 954 N THR B 973 SHEET 3 BA 4 HIS B1037 ASP B1049 -1 O ARG B1038 N GLN B 957 SHEET 4 BA 4 TRP B1012 SER B1015 1 O GLU B1013 N ARG B1039 SHEET 1 BB 4 ILE B 966 THR B 973 0 SHEET 2 BB 4 HIS B 946 THR B 958 -1 O PHE B 954 N THR B 973 SHEET 3 BB 4 HIS B1037 ASP B1049 -1 O ARG B1038 N GLN B 957 SHEET 4 BB 4 LYS B 993 TRP B 994 -1 O LYS B 993 N ARG B1047 SHEET 1 BC 2 TRP B1012 SER B1015 0 SHEET 2 BC 2 HIS B1037 ASP B1049 1 O HIS B1037 N SER B1015 SITE 1 AC1 6 TRP B 992 GLU B1009 TYR B1034 ARG B1048 SITE 2 AC1 6 PO4 B2053 HOH B2571 SITE 1 AC2 4 PHE B 949 GLU B1009 ARG B1046 PO4 B2052 SITE 1 AC3 5 HIS B 946 GLU B 995 SER B1000 HOH B2533 SITE 2 AC3 5 HOH B2535 CRYST1 75.953 75.953 75.953 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013166 0.00000