PDB Short entry for 4CC2 HEADER STRUCTURAL PROTEIN 17-OCT-13 4CC2 TITLE COMPLEX OF HUMAN TUBA C-TERMINAL SH3 DOMAIN WITH HUMAN N- TITLE 2 WASP PROLINE-RICH PEPTIDE - P212121 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNAMIN-BINDING PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: C-TERMINAL SH3 DOMAIN OF HUMAN TUBA, RESIDUES 1513-1577; COMPND 5 SYNONYM: SCAFFOLD PROTEIN TUBA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NEURAL WISKOTT-ALDRICH SYNDROME PROTEIN; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: N-WASP PROLINE-RICH PEPTIDE, RESIDUES 346-357; COMPND 11 SYNONYM: N-WASP, N-WASP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS STRUCTURAL PROTEIN, SRC HOMOLOGY 3, SH3 DOMAIN, PROLINE-RICH KEYWDS 2 PEPTIDE, ACTIN CYTOSKELETON, CORTICAL TENSION EXPDTA X-RAY DIFFRACTION AUTHOR L.POLLE,L.RIGANO,R.JULIAN,K.IRETON,W.-D.SCHUBERT REVDAT 3 19-FEB-14 4CC2 1 JRNL REVDAT 2 22-JAN-14 4CC2 1 JRNL REVDAT 1 30-OCT-13 4CC2 0 JRNL AUTH L.POLLE,L.A.RIGANO,R.JULIAN,K.IRETON,W.SCHUBERT JRNL TITL STRUCTURAL DETAILS OF HUMAN TUBA RECRUITMENT BY INLC OF JRNL TITL 2 LISTERIA MONOCYTOGENES ELUCIDATE BACTERIAL CELL-CELL JRNL TITL 3 SPREADING. JRNL REF STRUCTURE V. 22 304 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24332715 JRNL DOI 10.1016/J.STR.2013.10.017 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 93.47 REMARK 3 NUMBER OF REFLECTIONS : 17487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17232 REMARK 3 R VALUE (WORKING SET) : 0.17003 REMARK 3 FREE R VALUE : 0.21802 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.547 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.587 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1294 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.233 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.304 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.601 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58 REMARK 3 B22 (A**2) : -18.89 REMARK 3 B33 (A**2) : 19.47 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.020 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.021 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1304 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1266 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1765 ; 2.361 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2943 ; 1.607 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 152 ; 6.229 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;40.201 ;25.574 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;14.768 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 5.025 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 192 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1432 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 292 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1514 A 1577 REMARK 3 RESIDUE RANGE : B 2 B 13 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2820 -0.2520 -19.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.1123 T22: 0.2034 REMARK 3 T33: 0.0085 T12: -0.0056 REMARK 3 T13: 0.0068 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.2527 L22: 3.6915 REMARK 3 L33: 1.2627 L12: 0.4183 REMARK 3 L13: -0.1493 L23: -0.2543 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.0316 S13: 0.0198 REMARK 3 S21: -0.0652 S22: -0.0377 S23: -0.1668 REMARK 3 S31: -0.0181 S32: 0.0019 S33: 0.0297 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1514 C 1575 REMARK 3 RESIDUE RANGE : D 3 D 13 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1280 16.9430 -8.7580 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.2094 REMARK 3 T33: 0.0100 T12: -0.0070 REMARK 3 T13: 0.0066 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.8319 L22: 3.5241 REMARK 3 L33: 1.5912 L12: -0.0417 REMARK 3 L13: 0.2377 L23: 0.8031 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: 0.0595 S13: 0.1059 REMARK 3 S21: -0.2331 S22: -0.0026 S23: -0.0687 REMARK 3 S31: -0.1011 S32: 0.0459 S33: 0.0204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES WITH TLS ADDED. REMARK 4 REMARK 4 4CC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-13. REMARK 100 THE PDBE ID CODE IS EBI-56935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF REMARK 200 BI-MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.55 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 2.8 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.7 REMARK 200 R MERGE FOR SHELL (I) : 0.39 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZUU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 M NACL, 0.1 M BIS-TRIS PH 5.5 REMARK 285 REMARK 285 CRYST1 REMARK 285 B AND C AXES ARE SWAPPED DUE TO ORIGINAL INDEXING AS P21212 REMARK 285 NON-STANDARD SYMMETRY OPERATORS: X, Z, -Y REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.37500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 19.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.37500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1511 REMARK 465 PRO A 1512 REMARK 465 GLU A 1513 REMARK 465 GLY C 1511 REMARK 465 PRO C 1512 REMARK 465 GLU C 1513 REMARK 465 TYR C 1576 REMARK 465 THR C 1577 REMARK 465 PRO D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A1514 N CA REMARK 470 GLU C1575 CA C O CB CG CD OE1 OE2 REMARK 470 PRO D 3 N CA CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1A ASN A 1569 O HOH A 2051 1.84 REMARK 500 OE2A GLU A 1575 O HOH A 2063 1.85 REMARK 500 OD1 ASN C 1515 O HOH C 2008 2.19 REMARK 500 ND2B ASN C 1569 O HOH C 2056 2.19 REMARK 500 O HOH A 2004 O HOH A 2005 1.89 REMARK 500 O HOH A 2012 O HOH A 2023 2.05 REMARK 500 O HOH A 2014 O HOH A 2015 1.34 REMARK 500 O HOH A 2031 O HOH A 2032 1.50 REMARK 500 O HOH B 2006 O HOH B 2007 1.66 REMARK 500 O HOH B 2011 O HOH A 2053 2.02 REMARK 500 O HOH C 2005 O HOH C 2031 1.65 REMARK 500 O HOH C 2023 O HOH C 2025 1.78 REMARK 500 O HOH C 2040 O HOH C 2042 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ B LYS C 1541 O HOH C 2042 4455 1.85 REMARK 500 O HOH A 2014 O HOH C 2059 3544 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C1527 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP C1547 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A2578 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C2576 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A2579 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C2577 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A2580 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C2578 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C2579 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C2580 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C2581 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CC3 RELATED DB: PDB REMARK 900 COMPLEX OF HUMAN TUBA C-TERMINAL SH3 DOMAIN AND MENA REMARK 900 PROLINE-RICH PEPTIDE - H3 REMARK 900 RELATED ID: 4CC4 RELATED DB: PDB REMARK 900 COMPLEX OF INLC OF LISTERIA MONOCYTOGENES AND HUMAN REMARK 900 TUBA C-TERMINAL SH3 DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST TWO RESIDUES, GP, DERIVE FROM FUSION PROTEIN REMARK 999 CLEAVAGE SITE DBREF 4CC2 A 1513 1577 UNP Q6XZF7 DNMBP_HUMAN 1513 1577 DBREF 4CC2 B 2 13 UNP O00401 WASL_HUMAN 346 357 DBREF 4CC2 C 1513 1577 UNP Q6XZF7 DNMBP_HUMAN 1513 1577 DBREF 4CC2 D 2 13 UNP O00401 WASL_HUMAN 346 357 SEQADV 4CC2 GLY A 1511 UNP Q6XZF7 EXPRESSION TAG SEQADV 4CC2 PRO A 1512 UNP Q6XZF7 EXPRESSION TAG SEQADV 4CC2 GLY C 1511 UNP Q6XZF7 EXPRESSION TAG SEQADV 4CC2 PRO C 1512 UNP Q6XZF7 EXPRESSION TAG SEQRES 1 A 67 GLY PRO GLU GLY ASN GLN VAL TYR PHE ALA VAL TYR THR SEQRES 2 A 67 PHE LYS ALA ARG ASN PRO ASN GLU LEU SER VAL SER ALA SEQRES 3 A 67 ASN GLN LYS LEU LYS ILE LEU GLU PHE LYS ASP VAL THR SEQRES 4 A 67 GLY ASN THR GLU TRP TRP LEU ALA GLU VAL ASN GLY LYS SEQRES 5 A 67 LYS GLY TYR VAL PRO SER ASN TYR ILE ARG LYS THR GLU SEQRES 6 A 67 TYR THR SEQRES 1 C 67 GLY PRO GLU GLY ASN GLN VAL TYR PHE ALA VAL TYR THR SEQRES 2 C 67 PHE LYS ALA ARG ASN PRO ASN GLU LEU SER VAL SER ALA SEQRES 3 C 67 ASN GLN LYS LEU LYS ILE LEU GLU PHE LYS ASP VAL THR SEQRES 4 C 67 GLY ASN THR GLU TRP TRP LEU ALA GLU VAL ASN GLY LYS SEQRES 5 C 67 LYS GLY TYR VAL PRO SER ASN TYR ILE ARG LYS THR GLU SEQRES 6 C 67 TYR THR SEQRES 1 B 12 PRO PRO PRO ALA LEU PRO SER SER ALA PRO SER GLY SEQRES 1 D 12 PRO PRO PRO ALA LEU PRO SER SER ALA PRO SER GLY HET GOL A2578 12 HET GOL B1014 12 HET GOL B1015 6 HET GOL C2576 6 HET CL A2579 1 HET CL D1014 1 HET CL C2577 1 HET CL A2580 1 HET CL C2578 1 HET CL C2579 1 HET CL C2580 1 HET CL C2581 1 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CL 8(CL 1-) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 7 HOH *145(H2 O) SHEET 1 AA 5 LYS A1562 PRO A1567 0 SHEET 2 AA 5 TRP A1554 VAL A1559 -1 O TRP A1555 N VAL A1566 SHEET 3 AA 5 LYS A1539 GLU A1544 -1 O LYS A1541 N GLU A1558 SHEET 4 AA 5 VAL A1517 ALA A1520 -1 O TYR A1518 N LEU A1540 SHEET 5 AA 5 ILE A1571 THR A1574 -1 O ARG A1572 N PHE A1519 SHEET 1 CA 5 LYS C1562 PRO C1567 0 SHEET 2 CA 5 TRP C1554 VAL C1559 -1 O TRP C1555 N VAL C1566 SHEET 3 CA 5 LYS C1539 GLU C1544 -1 O LYS C1541 N GLU C1558 SHEET 4 CA 5 TYR C1518 ALA C1520 -1 O TYR C1518 N LEU C1540 SHEET 5 CA 5 ILE C1571 ARG C1572 -1 O ARG C1572 N PHE C1519 CISPEP 1 GLY C 1514 ASN C 1515 0 -8.76 SITE 1 AC1 5 VAL A1517 HOH A2001 HOH A2003 THR C1549 SITE 2 AC1 5 HOH C2042 SITE 1 AC2 8 ARG A1527 GLU A1531 LEU B 6 PRO B 7 SITE 2 AC2 8 SER B 9 ALA B 10 ARG C1572 HOH C2056 SITE 1 AC3 7 ASN A1569 HOH A2046 HOH A2053 ALA B 5 SITE 2 AC3 7 LEU B 6 SER B 8 HOH B2011 SITE 1 AC4 4 GLY C1514 TYR C1518 LYS C1573 HOH C2006 SITE 1 AC5 4 LYS A1525 ARG A1527 HOH A2056 TYR C1518 SITE 1 AC6 3 ASN C1528 ASN C1530 SER D 12 SITE 1 AC7 3 LYS A1573 LYS C1525 ARG C1527 SITE 1 AC8 3 GLU A1544 PHE A1545 LYS A1546 SITE 1 AC9 2 GLU C1544 PHE C1545 SITE 1 BC1 5 LYS C1541 ILE C1542 HOH C2005 HOH C2009 SITE 2 BC1 5 HOH C2031 SITE 1 BC2 2 HOH A2061 LYS C1539 SITE 1 BC3 1 SER C1533 CRYST1 48.750 70.310 38.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026316 0.00000