PDB Short entry for 4CKR HEADER TRANSFERASE 07-JAN-14 4CKR TITLE CRYSTAL STRUCTURE OF THE HUMAN DDR1 KINASE DOMAIN IN COMPLEX WITH TITLE 2 DDR1-IN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 601-913; COMPND 5 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1, CD167 ANTIGEN-LIKE COMPND 6 FAMILY MEMBER A, CELL ADHESION KINASE, DISCOIDIN RECEPTOR TYROSINE COMPND 7 KINASE, HGK2, MAMMARY CARCINOMA KINASE 10, MCK-10, PROTEIN-TYROSINE COMPND 8 KINASE 3A, PROTEIN-TYROSINE KINASE RTK-6, TRK E, TYROSINE KINASE DDR, COMPND 9 TYROSINE-PROTEIN KINASE CAK, CD167A; COMPND 10 EC: 2.7.10.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFB-LIC-BSE; SOURCE 11 OTHER_DETAILS: MAMMALIAN GENE COLLECTION (MGC) KEYWDS TRANSFERASE, COLLAGEN, DISCOIDIN DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR P.CANNING,J.M.ELKINS,S.GOUBIN,P.MAHAJAN,T.KROJER,J.A.NEWMAN,S.DIXON- AUTHOR 2 CLARKE,A.CHAIKUAD,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA, AUTHOR 3 A.BULLOCK REVDAT 3 20-DEC-23 4CKR 1 REMARK REVDAT 2 06-SEP-17 4CKR 1 REMARK REVDAT 1 15-JAN-14 4CKR 0 SPRSDE 15-JAN-14 4CKR 4BKI JRNL AUTH H.KIM,L.TAN,E.L.WEISBERG,F.LIU,P.CANNING,H.G.CHOI,S.A.EZELL, JRNL AUTH 2 H.WU,Z.ZHAO,J.WANG,A.MANDINOVA,J.D.GRIFFIN,A.N.BULLOCK, JRNL AUTH 3 Q.LIU,S.W.LEE,N.S.GRAY JRNL TITL DISCOVERY OF A POTENT AND SELECTIVE DDR1 RECEPTOR TYROSINE JRNL TITL 2 KINASE INHIBITOR. JRNL REF ACS CHEM.BIOL. V. 8 2145 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23899692 JRNL DOI 10.1021/CB400430T REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 860 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1147 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2313 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.947 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2439 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2286 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3309 ; 1.301 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5229 ; 2.347 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 6.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;33.714 ;23.303 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;13.241 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.784 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2869 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 574 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1183 ; 1.685 ; 3.365 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1182 ; 1.684 ; 3.365 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1477 ; 2.683 ; 5.039 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1255 ; 1.922 ; 3.557 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 600 A 638 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3020 37.2640 13.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.0379 REMARK 3 T33: 0.1377 T12: -0.0529 REMARK 3 T13: -0.0411 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 3.3681 L22: 0.6561 REMARK 3 L33: 4.0524 L12: 1.3873 REMARK 3 L13: 1.7901 L23: 1.0623 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: 0.0941 S13: 0.2173 REMARK 3 S21: 0.0797 S22: 0.0120 S23: 0.0583 REMARK 3 S31: 0.1387 S32: 0.1730 S33: 0.0267 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 639 A 677 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0530 39.2960 13.8690 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.1606 REMARK 3 T33: 0.1869 T12: -0.0294 REMARK 3 T13: -0.0152 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 5.8021 L22: 2.5805 REMARK 3 L33: 0.5983 L12: -2.7171 REMARK 3 L13: -0.3007 L23: 0.5866 REMARK 3 S TENSOR REMARK 3 S11: 0.1868 S12: -0.1917 S13: 0.4556 REMARK 3 S21: -0.1497 S22: -0.3202 S23: -0.1974 REMARK 3 S31: 0.0230 S32: -0.1078 S33: 0.1335 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 678 A 720 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2350 28.9730 14.8610 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.1211 REMARK 3 T33: 0.1417 T12: -0.0235 REMARK 3 T13: -0.0528 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.2704 L22: 2.9026 REMARK 3 L33: 0.1367 L12: 1.4356 REMARK 3 L13: -0.0581 L23: 0.4792 REMARK 3 S TENSOR REMARK 3 S11: 0.1113 S12: -0.0235 S13: -0.0296 REMARK 3 S21: 0.1833 S22: -0.0433 S23: -0.3379 REMARK 3 S31: 0.0239 S32: -0.0061 S33: -0.0679 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 736 A 813 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0960 25.1480 11.4200 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1145 REMARK 3 T33: 0.0833 T12: -0.0450 REMARK 3 T13: -0.0361 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.4379 L22: 0.8484 REMARK 3 L33: 0.4206 L12: 0.5877 REMARK 3 L13: -0.1058 L23: 0.3013 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: 0.0753 S13: 0.0432 REMARK 3 S21: 0.0448 S22: 0.0821 S23: -0.0859 REMARK 3 S31: -0.1152 S32: 0.0953 S33: -0.0067 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 814 A 913 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2100 19.7950 10.0180 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.1133 REMARK 3 T33: 0.0705 T12: -0.0327 REMARK 3 T13: -0.0036 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.1850 L22: 1.3406 REMARK 3 L33: 2.4923 L12: 0.6457 REMARK 3 L13: 0.4775 L23: -0.0489 REMARK 3 S TENSOR REMARK 3 S11: -0.1944 S12: -0.0083 S13: -0.0212 REMARK 3 S21: -0.0336 S22: 0.1826 S23: 0.1284 REMARK 3 S31: -0.0152 S32: -0.2033 S33: 0.0118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4CKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1290059363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17062 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.96000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZOS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG3350, 0.1M BIS-TRIS-PROPANE PH REMARK 280 7.2, 0.2M SODIUM/POTASSIUM PHOSPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.24500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.65400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.65400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.62250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.65400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.65400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 133.86750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.65400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.65400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.62250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.65400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.65400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 133.86750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.24500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 599 REMARK 465 LYS A 721 REMARK 465 ALA A 722 REMARK 465 ALA A 723 REMARK 465 GLU A 724 REMARK 465 GLY A 725 REMARK 465 ALA A 726 REMARK 465 PRO A 727 REMARK 465 GLY A 728 REMARK 465 ASP A 729 REMARK 465 GLY A 730 REMARK 465 GLN A 731 REMARK 465 ALA A 732 REMARK 465 ALA A 733 REMARK 465 GLN A 734 REMARK 465 GLY A 735 REMARK 465 GLN A 800 REMARK 465 GLY A 801 REMARK 465 ARG A 802 REMARK 465 ALA A 803 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 600 CG SD CE REMARK 470 ARG A 602 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 620 CG CD OE1 NE2 REMARK 470 LEU A 638 CG CD1 CD2 REMARK 470 ASP A 639 CG OD1 OD2 REMARK 470 ASN A 643 CG OD1 ND2 REMARK 470 LYS A 646 CG CD CE NZ REMARK 470 LYS A 663 CG CD CE NZ REMARK 470 LYS A 671 CG CD CE NZ REMARK 470 LYS A 674 CD CE NZ REMARK 470 LYS A 680 CD CE NZ REMARK 470 ARG A 686 NE CZ NH1 NH2 REMARK 470 ASP A 720 CG OD1 OD2 REMARK 470 ASN A 790 CG OD1 ND2 REMARK 470 VAL A 799 CG1 CG2 REMARK 470 LYS A 819 CG CD CE NZ REMARK 470 ARG A 862 CZ NH1 NH2 REMARK 470 GLN A 864 CD OE1 NE2 REMARK 470 GLN A 900 CD OE1 NE2 REMARK 470 ARG A 903 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 797 OE2 GLU A 851 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 614 144.11 -174.74 REMARK 500 ARG A 765 -10.58 87.29 REMARK 500 ASP A 766 47.90 -149.87 REMARK 500 MET A 817 -26.51 -143.98 REMARK 500 MET A 817 59.71 164.99 REMARK 500 GLU A 907 -79.74 -106.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 816 MET A 817 142.61 REMARK 500 MET A 817 GLY A 818 144.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DI1 A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1005 DBREF 4CKR A 601 913 UNP Q08345 DDR1_HUMAN 601 913 SEQADV 4CKR SER A 599 UNP Q08345 EXPRESSION TAG SEQADV 4CKR MET A 600 UNP Q08345 EXPRESSION TAG SEQRES 1 A 315 SER MET PRO ARG VAL ASP PHE PRO ARG SER ARG LEU ARG SEQRES 2 A 315 PHE LYS GLU LYS LEU GLY GLU GLY GLN PHE GLY GLU VAL SEQRES 3 A 315 HIS LEU CYS GLU VAL ASP SER PRO GLN ASP LEU VAL SER SEQRES 4 A 315 LEU ASP PHE PRO LEU ASN VAL ARG LYS GLY HIS PRO LEU SEQRES 5 A 315 LEU VAL ALA VAL LYS ILE LEU ARG PRO ASP ALA THR LYS SEQRES 6 A 315 ASN ALA ARG ASN ASP PHE LEU LYS GLU VAL LYS ILE MET SEQRES 7 A 315 SER ARG LEU LYS ASP PRO ASN ILE ILE ARG LEU LEU GLY SEQRES 8 A 315 VAL CYS VAL GLN ASP ASP PRO LEU CYS MET ILE THR ASP SEQRES 9 A 315 TYR MET GLU ASN GLY ASP LEU ASN GLN PHE LEU SER ALA SEQRES 10 A 315 HIS GLN LEU GLU ASP LYS ALA ALA GLU GLY ALA PRO GLY SEQRES 11 A 315 ASP GLY GLN ALA ALA GLN GLY PRO THR ILE SER TYR PRO SEQRES 12 A 315 MET LEU LEU HIS VAL ALA ALA GLN ILE ALA SER GLY MET SEQRES 13 A 315 ARG TYR LEU ALA THR LEU ASN PHE VAL HIS ARG ASP LEU SEQRES 14 A 315 ALA THR ARG ASN CYS LEU VAL GLY GLU ASN PHE THR ILE SEQRES 15 A 315 LYS ILE ALA ASP PHE GLY MET SER ARG ASN LEU TYR ALA SEQRES 16 A 315 GLY ASP TYR TYR ARG VAL GLN GLY ARG ALA VAL LEU PRO SEQRES 17 A 315 ILE ARG TRP MET ALA TRP GLU CYS ILE LEU MET GLY LYS SEQRES 18 A 315 PHE THR THR ALA SER ASP VAL TRP ALA PHE GLY VAL THR SEQRES 19 A 315 LEU TRP GLU VAL LEU MET LEU CYS ARG ALA GLN PRO PHE SEQRES 20 A 315 GLY GLN LEU THR ASP GLU GLN VAL ILE GLU ASN ALA GLY SEQRES 21 A 315 GLU PHE PHE ARG ASP GLN GLY ARG GLN VAL TYR LEU SER SEQRES 22 A 315 ARG PRO PRO ALA CYS PRO GLN GLY LEU TYR GLU LEU MET SEQRES 23 A 315 LEU ARG CYS TRP SER ARG GLU SER GLU GLN ARG PRO PRO SEQRES 24 A 315 PHE SER GLN LEU HIS ARG PHE LEU ALA GLU ASP ALA LEU SEQRES 25 A 315 ASN THR VAL HET DI1 A1000 40 HET EDO A1001 4 HET EDO A1002 4 HET EDO A1003 4 HET EDO A1004 4 HET EDO A1005 4 HETNAM DI1 4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]-N-{4-METHYL-3-[(2- HETNAM 2 DI1 OXO-2,3-DIHYDRO-1H-INDOL-5-YL)OXY]PHENYL}-3- HETNAM 3 DI1 (TRIFLUOROMETHYL)BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 DI1 C30 H31 F3 N4 O3 FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *38(H2 O) HELIX 1 1 PRO A 606 SER A 608 5 3 HELIX 2 2 SER A 631 LEU A 635 5 5 HELIX 3 3 THR A 662 LEU A 679 1 18 HELIX 4 4 ASP A 708 ALA A 715 1 8 HELIX 5 5 SER A 739 LEU A 760 1 22 HELIX 6 6 ALA A 768 ARG A 770 5 3 HELIX 7 7 ARG A 789 TYR A 796 5 8 HELIX 8 8 PRO A 806 MET A 810 5 5 HELIX 9 9 ALA A 811 GLY A 818 1 8 HELIX 10 10 THR A 821 MET A 838 1 18 HELIX 11 11 THR A 849 ASP A 863 1 15 HELIX 12 12 PRO A 877 TRP A 888 1 12 HELIX 13 13 GLU A 891 ARG A 895 5 5 HELIX 14 14 PRO A 897 GLU A 907 1 11 HELIX 15 15 ALA A 909 VAL A 913 5 5 SHEET 1 AA 5 LEU A 610 GLY A 619 0 SHEET 2 AA 5 GLY A 622 VAL A 629 -1 O GLY A 622 N GLY A 619 SHEET 3 AA 5 LEU A 651 LEU A 657 -1 O VAL A 652 N CYS A 627 SHEET 4 AA 5 CYS A 698 ASP A 702 -1 O MET A 699 N LYS A 655 SHEET 5 AA 5 LEU A 687 CYS A 691 -1 N LEU A 688 O ILE A 700 SHEET 1 AB 2 GLN A 717 LEU A 718 0 SHEET 2 AB 2 THR A 737 ILE A 738 1 N ILE A 738 O GLN A 717 SHEET 1 AC 2 CYS A 772 VAL A 774 0 SHEET 2 AC 2 ILE A 780 ILE A 782 -1 O LYS A 781 N LEU A 773 CISPEP 1 ASP A 695 PRO A 696 0 -4.23 SITE 1 AC1 20 VAL A 624 ALA A 653 LYS A 655 GLU A 672 SITE 2 AC1 20 MET A 676 LEU A 679 ILE A 685 THR A 701 SITE 3 AC1 20 ASP A 702 TYR A 703 MET A 704 LEU A 757 SITE 4 AC1 20 VAL A 763 HIS A 764 ARG A 765 LEU A 773 SITE 5 AC1 20 ILE A 782 ALA A 783 ASP A 784 PHE A 785 SITE 1 AC2 7 ASN A 706 PHE A 712 VAL A 774 GLY A 775 SITE 2 AC2 7 GLU A 776 ASN A 777 PHE A 778 SITE 1 AC3 5 THR A 822 PRO A 897 PHE A 898 SER A 899 SITE 2 AC3 5 EDO A1004 SITE 1 AC4 6 ASN A 710 GLU A 835 CYS A 840 ALA A 842 SITE 2 AC4 6 HOH A2006 HOH A2038 SITE 1 AC5 5 THR A 822 SER A 892 ARG A 895 VAL A 913 SITE 2 AC5 5 EDO A1002 SITE 1 AC6 4 ASN A 683 ALA A 748 SER A 752 HIS A 902 CRYST1 59.308 59.308 178.490 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016861 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005603 0.00000