PDB Short entry for 4CR0 HEADER VIRAL PROTEIN 21-FEB-14 4CR0 TITLE CRYSTAL STRUCTURE OF H5 (VN1194) ASN186LYS/GLY143ARG MUTANT TITLE 2 HAEMAGGLUTININ CAVEAT 4CR0 NAG A 1023 HAS WRONG CHIRALITY AT ATOM C1 NAG B 1154 HAS CAVEAT 2 4CR0 WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HA1 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 17-340; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEMAGGLUTININ HA2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: HA2 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 347-512; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_COMMON: A/VIETNAM/1194/2004(H5N1); SOURCE 4 ORGANISM_TAXID: 644788; SOURCE 5 GENE: HA; SOURCE 6 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9031; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 10 ORGANISM_COMMON: A/VIETNAM/1194/2004(H5N1); SOURCE 11 ORGANISM_TAXID: 644788; SOURCE 12 GENE: HA; SOURCE 13 EXPRESSION_SYSTEM: GALLUS GALLUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9031 KEYWDS VIRAL PROTEIN, SIALIC ACID, GLYCOPROTEIN, VIRUS RECEPTOR, AVIAN FLU, KEYWDS 2 SIALYLLACTOSAMINE, 3SLN, 3'SLN, 6SLN, 6'SLN, LSTA EXPDTA X-RAY DIFFRACTION AUTHOR P.J.COLLINS,S.G.VACHIERI,X.XIONG,H.XIAO,S.R.MARTIN,P.J.COOMBS,J.LIU, AUTHOR 2 P.A.WALKER,Y.P.LIN,J.W.MCCAULEY,S.J.GAMBLIN,J.J.SKEHEL REVDAT 5 20-DEC-23 4CR0 1 HETSYN REVDAT 4 29-JUL-20 4CR0 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 07-NOV-18 4CR0 1 COMPND SOURCE DBREF SEQADV REVDAT 2 11-JUN-14 4CR0 1 JRNL REVDAT 1 28-MAY-14 4CR0 0 JRNL AUTH X.XIONG,H.XIAO,S.R.MARTIN,P.J.COOMBS,J.LIU,P.J.COLLINS, JRNL AUTH 2 S.G.VACHIERI,P.A.WALKER,Y.P.LIN,J.W.MCCAULEY,S.J.GAMBLIN, JRNL AUTH 3 J.J.SKEHEL JRNL TITL ENHANCED HUMAN RECEPTOR BINDING BY H5 HAEMAGGLUTININS. JRNL REF VIROLOGY V. 456 179 2014 JRNL REFN ISSN 0042-6822 JRNL PMID 24889237 JRNL DOI 10.1016/J.VIROL.2014.03.008 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0046 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 105.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 19715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1288 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : 1.04000 REMARK 3 B33 (A**2) : -3.38000 REMARK 3 B12 (A**2) : 0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.640 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.279 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.777 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3990 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3675 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5410 ; 1.163 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8433 ; 0.718 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 479 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 199 ;35.303 ;25.075 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;16.492 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.084 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 584 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4557 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 937 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1922 ; 0.583 ; 1.713 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1921 ; 0.583 ; 1.713 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2399 ; 1.069 ; 2.569 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2068 ; 0.840 ; 1.825 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5480 -25.5847 -18.4435 REMARK 3 T TENSOR REMARK 3 T11: 0.4556 T22: 0.4785 REMARK 3 T33: 0.2386 T12: -0.0272 REMARK 3 T13: -0.0088 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.1233 L22: 0.0312 REMARK 3 L33: 5.2972 L12: -0.0451 REMARK 3 L13: -0.7631 L23: 0.3666 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: 0.0527 S13: 0.0417 REMARK 3 S21: -0.0768 S22: 0.0487 S23: -0.0001 REMARK 3 S31: -0.6514 S32: 0.1316 S33: -0.1232 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 106 A 262 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8051 -25.3392 16.7665 REMARK 3 T TENSOR REMARK 3 T11: 0.1128 T22: 0.0198 REMARK 3 T33: 0.0622 T12: -0.0143 REMARK 3 T13: 0.0209 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.5342 L22: 1.0588 REMARK 3 L33: 2.2906 L12: 0.1836 REMARK 3 L13: 0.1863 L23: 0.1399 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: -0.0075 S13: 0.0222 REMARK 3 S21: -0.0665 S22: 0.0084 S23: 0.0569 REMARK 3 S31: -0.2063 S32: 0.0170 S33: -0.0205 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5418 -26.8833 -26.6083 REMARK 3 T TENSOR REMARK 3 T11: 0.2993 T22: 0.7123 REMARK 3 T33: 0.1908 T12: -0.0774 REMARK 3 T13: 0.0222 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.5428 L22: 0.4268 REMARK 3 L33: 12.7867 L12: 0.3862 REMARK 3 L13: 2.6203 L23: 1.9036 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.1154 S13: 0.0307 REMARK 3 S21: -0.1022 S22: -0.0173 S23: -0.0073 REMARK 3 S31: -0.1021 S32: -0.6803 S33: 0.0176 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0649 -28.7014 -58.3361 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.2643 REMARK 3 T33: 0.1860 T12: -0.0255 REMARK 3 T13: -0.0106 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.4469 L22: 1.6456 REMARK 3 L33: 6.6528 L12: 1.3156 REMARK 3 L13: -1.8524 L23: -2.9997 REMARK 3 S TENSOR REMARK 3 S11: 0.1083 S12: -0.2004 S13: 0.0417 REMARK 3 S21: 0.1747 S22: -0.0451 S23: -0.0276 REMARK 3 S31: -0.4532 S32: 0.0417 S33: -0.0632 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 84 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6669 -40.8428 -10.3876 REMARK 3 T TENSOR REMARK 3 T11: 0.2421 T22: 0.3811 REMARK 3 T33: 0.4216 T12: -0.0834 REMARK 3 T13: -0.0980 T23: 0.2024 REMARK 3 L TENSOR REMARK 3 L11: 1.9295 L22: 6.8035 REMARK 3 L33: 12.5031 L12: -3.0827 REMARK 3 L13: 4.1747 L23: -4.3324 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: 0.4065 S13: 0.4156 REMARK 3 S21: -0.4894 S22: -0.5327 S23: -0.6091 REMARK 3 S31: -0.4814 S32: 0.9005 S33: 0.5448 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 85 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 3.7727 -37.3764 -56.5328 REMARK 3 T TENSOR REMARK 3 T11: 0.2085 T22: 0.2175 REMARK 3 T33: 0.1932 T12: -0.0846 REMARK 3 T13: -0.0550 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 0.5580 L22: 0.7007 REMARK 3 L33: 13.8732 L12: 0.1135 REMARK 3 L13: -0.7990 L23: -2.8993 REMARK 3 S TENSOR REMARK 3 S11: 0.1231 S12: -0.1499 S13: -0.1501 REMARK 3 S21: 0.0130 S22: -0.1699 S23: -0.0681 REMARK 3 S31: 0.0588 S32: 0.4361 S33: 0.0468 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 142 B 161 REMARK 3 ORIGIN FOR THE GROUP (A): -1.2812 -22.6375 -77.7572 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.2203 REMARK 3 T33: 0.1469 T12: 0.0299 REMARK 3 T13: -0.0332 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 10.1566 L22: 3.1080 REMARK 3 L33: 4.9821 L12: 1.2568 REMARK 3 L13: -3.9508 L23: 2.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.2623 S12: 0.0795 S13: 0.2079 REMARK 3 S21: 0.1485 S22: -0.0702 S23: -0.1296 REMARK 3 S31: -0.2907 S32: -0.2753 S33: -0.1921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4CR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1290059806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20820 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 67.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4BGW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MOPS PH 7.0, 12% PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.20550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 105.20550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 105.20550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -38.97500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -67.50668 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 38.97500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -67.50668 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 322 REMARK 465 ARG A 323 REMARK 465 GLU A 324 REMARK 465 THR A 325 REMARK 465 ARG A 326 REMARK 465 GLN B 161 REMARK 465 TYR B 162 REMARK 465 SER B 163 REMARK 465 GLU B 164 REMARK 465 GLU B 165 REMARK 465 ALA B 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 11 43.88 -106.12 REMARK 500 ARG A 53 -114.73 60.45 REMARK 500 PRO A 65 -18.78 -49.36 REMARK 500 ASP A 88 -111.95 -115.76 REMARK 500 GLN A 192 -61.53 68.74 REMARK 500 ASN A 206 86.72 -160.92 REMARK 500 ALA B 5 -61.53 -93.54 REMARK 500 GLN B 62 -168.63 -69.82 REMARK 500 GLU B 64 79.01 -109.18 REMARK 500 ARG B 127 -116.65 47.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2017 DISTANCE = 6.48 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CQP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF H5 (VN1194) SER227ASN/GLN196ARG MUTANT REMARK 900 HAEMAGGLUTININ REMARK 900 RELATED ID: 4CQQ RELATED DB: PDB REMARK 900 H5 (VN1194) SER227ASN/GLN196ARG MUTANT HAEMAGGLUTININ IN COMPLEX REMARK 900 WITH AVIAN RECEPTOR ANALOGUE 3'SLN REMARK 900 RELATED ID: 4CQR RELATED DB: PDB REMARK 900 H5 (VN1194) SER227ASN/GLN196ARG MUTANT HAEMAGGLUTININ IN COMPLEX REMARK 900 WITH HUMAN RECEPTOR ANALOGUE 6'SLN REMARK 900 RELATED ID: 4CQS RELATED DB: PDB REMARK 900 H5 (VN1194) ASN186LYS MUTANT HAEMAGGLUTININ IN COMPLEX WITH AVIAN REMARK 900 RECEPTOR ANALOGUE 3'SLN REMARK 900 RELATED ID: 4CQT RELATED DB: PDB REMARK 900 H5 (VN1194) ASN186LYS MUTANT HAEMAGGLUTININ IN COMPLEX WITH AVIAN REMARK 900 RECEPTOR ANALOGUE 3'SLN REMARK 900 RELATED ID: 4CQU RELATED DB: PDB REMARK 900 H5 (VN1194) ASN186LYS MUTANT HAEMAGGLUTININ IN COMPLEX WITH HUMAN REMARK 900 RECEPTOR ANALOGUE 6'SLN REMARK 900 RELATED ID: 4CQV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF H5 (TYTY) DEL133/ILE155THR MUTANT REMARK 900 HAEMAGGLUTININ REMARK 900 RELATED ID: 4CQW RELATED DB: PDB REMARK 900 H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH REMARK 900 AVIAN RECEPTOR ANALOGUE 3'SLN REMARK 900 RELATED ID: 4CQX RELATED DB: PDB REMARK 900 H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH REMARK 900 HUMAN RECEPTOR ANALOGUE 6'SLN REMARK 900 RELATED ID: 4CQY RELATED DB: PDB REMARK 900 H5 (TYTY) DEL133/ILE155THR MUTANT HAEMAGGLUTININ IN COMPLEX WITH REMARK 900 AVIAN RECEPTOR ANALOGUE LSTA REMARK 900 RELATED ID: 4CQZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF H5 (VN1194) GLN196ARG MUTANT HAEMAGGLUTININ REMARK 999 REMARK 999 SEQUENCE REMARK 999 MULTIBASIC SITE REMOVED DBREF 4CR0 A 1 326 UNP Q6DQ34 Q6DQ34_9INFA 17 342 DBREF 4CR0 B 1 166 UNP Q6DQ34 Q6DQ34_9INFA 347 512 SEQADV 4CR0 ARG A 139 UNP Q6DQ34 GLY 155 CONFLICT SEQADV 4CR0 LYS A 182 UNP Q6DQ34 ASN 198 CONFLICT SEQADV 4CR0 THR A 325 UNP Q6DQ34 ARG 341 CONFLICT SEQADV 4CR0 SER B 160 UNP Q6DQ34 PRO 506 CONFLICT SEQRES 1 A 326 ASP GLN ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 A 326 GLU GLN VAL ASP THR ILE MET GLU LYS ASN VAL THR VAL SEQRES 3 A 326 THR HIS ALA GLN ASP ILE LEU GLU LYS THR HIS ASN GLY SEQRES 4 A 326 LYS LEU CYS ASP LEU ASP GLY VAL LYS PRO LEU ILE LEU SEQRES 5 A 326 ARG ASP CYS SER VAL ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 6 A 326 MET CYS ASP GLU PHE ILE ASN VAL PRO GLU TRP SER TYR SEQRES 7 A 326 ILE VAL GLU LYS ALA ASN PRO VAL ASN ASP LEU CYS TYR SEQRES 8 A 326 PRO GLY ASP PHE ASN ASP TYR GLU GLU LEU LYS HIS LEU SEQRES 9 A 326 LEU SER ARG ILE ASN HIS PHE GLU LYS ILE GLN ILE ILE SEQRES 10 A 326 PRO LYS SER SER TRP SER SER HIS GLU ALA SER LEU GLY SEQRES 11 A 326 VAL SER SER ALA CYS PRO TYR GLN ARG LYS SER SER PHE SEQRES 12 A 326 PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASN SER THR SEQRES 13 A 326 TYR PRO THR ILE LYS ARG SER TYR ASN ASN THR ASN GLN SEQRES 14 A 326 GLU ASP LEU LEU VAL LEU TRP GLY ILE HIS HIS PRO LYS SEQRES 15 A 326 ASP ALA ALA GLU GLN THR LYS LEU TYR GLN ASN PRO THR SEQRES 16 A 326 THR TYR ILE SER VAL GLY THR SER THR LEU ASN GLN ARG SEQRES 17 A 326 LEU VAL PRO ARG ILE ALA THR ARG SER LYS VAL ASN GLY SEQRES 18 A 326 GLN SER GLY ARG MET GLU PHE PHE TRP THR ILE LEU LYS SEQRES 19 A 326 PRO ASN ASP ALA ILE ASN PHE GLU SER ASN GLY ASN PHE SEQRES 20 A 326 ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS LYS GLY SEQRES 21 A 326 ASP SER THR ILE MET LYS SER GLU LEU GLU TYR GLY ASN SEQRES 22 A 326 CYS ASN THR LYS CYS GLN THR PRO MET GLY ALA ILE ASN SEQRES 23 A 326 SER SER MET PRO PHE HIS ASN ILE HIS PRO LEU THR ILE SEQRES 24 A 326 GLY GLU CYS PRO LYS TYR VAL LYS SER ASN ARG LEU VAL SEQRES 25 A 326 LEU ALA THR GLY LEU ARG ASN SER PRO GLN ARG GLU THR SEQRES 26 A 326 ARG SEQRES 1 B 166 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 166 TRP GLN GLY MET VAL ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 166 SER ASN GLU GLN GLY SER GLY TYR ALA ALA ASP LYS GLU SEQRES 4 B 166 SER THR GLN LYS ALA ILE ASP GLY VAL THR ASN LYS VAL SEQRES 5 B 166 ASN SER ILE ILE ASP LYS MET ASN THR GLN PHE GLU ALA SEQRES 6 B 166 VAL GLY ARG GLU PHE ASN ASN LEU GLU ARG ARG ILE GLU SEQRES 7 B 166 ASN LEU ASN LYS LYS MET GLU ASP GLY PHE LEU ASP VAL SEQRES 8 B 166 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU MET GLU ASN SEQRES 9 B 166 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 166 LEU TYR ASP LYS VAL ARG LEU GLN LEU ARG ASP ASN ALA SEQRES 11 B 166 LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 166 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 B 166 TYR ASP TYR SER GLN TYR SER GLU GLU ALA MODRES 4CR0 ASN A 23 ASN GLYCOSYLATION SITE MODRES 4CR0 ASN A 154 ASN GLYCOSYLATION SITE MODRES 4CR0 ASN A 165 ASN GLYCOSYLATION SITE MODRES 4CR0 ASN B 154 ASN GLYCOSYLATION SITE HET NAG A1023 14 HET NAG A1154 14 HET NAG A1165 14 HET NAG B1154 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 7 HOH *130(H2 O) HELIX 1 1 SER A 56 GLY A 63 1 8 HELIX 2 2 CYS A 67 ILE A 71 5 5 HELIX 3 3 ASP A 97 ARG A 107 1 11 HELIX 4 4 PRO A 118 TRP A 122 5 5 HELIX 5 5 ASP A 183 GLN A 192 1 10 HELIX 6 6 ASP B 37 LYS B 58 1 22 HELIX 7 7 GLU B 74 ARG B 127 1 54 HELIX 8 8 ASP B 145 ASN B 154 1 10 SHEET 1 BA 5 GLY B 31 ALA B 36 0 SHEET 2 BA 5 TYR B 22 ASN B 28 -1 O TYR B 24 N ALA B 35 SHEET 3 BA 5 GLN A 2 TYR A 7 -1 O GLN A 2 N SER B 27 SHEET 4 BA 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 3 SHEET 5 BA 5 ALA B 130 GLU B 132 -1 O LYS B 131 N GLU B 139 SHEET 1 AA 2 GLN A 15 VAL A 16 0 SHEET 2 AA 2 VAL A 24 THR A 25 -1 O VAL A 24 N VAL A 16 SHEET 1 AB 2 ALA A 29 ASP A 31 0 SHEET 2 AB 2 VAL A 312 ALA A 314 -1 O LEU A 313 N GLN A 30 SHEET 1 AC 3 LEU A 33 GLU A 34 0 SHEET 2 AC 3 PHE A 291 HIS A 292 1 O PHE A 291 N GLU A 34 SHEET 3 AC 3 LYS A 304 TYR A 305 1 O LYS A 304 N HIS A 292 SHEET 1 AD 2 LEU A 41 LEU A 44 0 SHEET 2 AD 2 TYR A 271 THR A 276 1 N GLY A 272 O LEU A 41 SHEET 1 AE 3 LEU A 50 ILE A 51 0 SHEET 2 AE 3 ILE A 79 GLU A 81 1 N VAL A 80 O LEU A 50 SHEET 3 AE 3 ILE A 264 LYS A 266 1 O MET A 265 N GLU A 81 SHEET 1 AF 5 GLY A 93 PHE A 95 0 SHEET 2 AF 5 ARG A 225 LEU A 233 1 O MET A 226 N ASP A 94 SHEET 3 AF 5 LEU A 172 HIS A 180 -1 O LEU A 172 N LEU A 233 SHEET 4 AF 5 PHE A 247 PRO A 250 -1 O ILE A 248 N GLY A 177 SHEET 5 AF 5 VAL A 147 TRP A 149 -1 O VAL A 148 N ALA A 249 SHEET 1 AG 5 GLY A 93 PHE A 95 0 SHEET 2 AG 5 ARG A 225 LEU A 233 1 O MET A 226 N ASP A 94 SHEET 3 AG 5 LEU A 172 HIS A 180 -1 O LEU A 172 N LEU A 233 SHEET 4 AG 5 TYR A 252 LYS A 259 -1 O TYR A 254 N LEU A 173 SHEET 5 AG 5 ILE A 108 GLN A 115 -1 N ASN A 109 O LYS A 258 SHEET 1 AH 2 SER A 132 TYR A 137 0 SHEET 2 AH 2 LYS A 140 SER A 142 -1 O LYS A 140 N TYR A 137 SHEET 1 AI 4 ILE A 160 ASN A 165 0 SHEET 2 AI 4 ALA A 238 SER A 243 -1 O ILE A 239 N TYR A 164 SHEET 3 AI 4 ILE A 198 GLY A 201 -1 O SER A 199 N GLU A 242 SHEET 4 AI 4 ASN A 206 LEU A 209 -1 O GLN A 207 N VAL A 200 SHEET 1 AJ 3 ALA A 284 ILE A 285 0 SHEET 2 AJ 3 CYS A 278 GLN A 279 -1 O CYS A 278 N ILE A 285 SHEET 3 AJ 3 ILE A 299 GLY A 300 -1 O ILE A 299 N GLN A 279 SSBOND 1 CYS A 4 CYS B 137 1555 1555 2.05 SSBOND 2 CYS A 42 CYS A 274 1555 1555 2.04 SSBOND 3 CYS A 55 CYS A 67 1555 1555 2.04 SSBOND 4 CYS A 90 CYS A 135 1555 1555 2.08 SSBOND 5 CYS A 278 CYS A 302 1555 1555 2.04 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.07 LINK ND2 ASN A 23 C1 NAG A1023 1555 1555 1.45 LINK ND2 ASN A 154 C1 NAG A1154 1555 1555 1.44 LINK ND2 ASN A 165 C1 NAG A1165 1555 1555 1.45 LINK ND2 ASN B 154 C1 NAG B1154 1555 1555 1.43 CISPEP 1 ASN B 60 THR B 61 0 -12.03 CRYST1 77.950 77.950 210.411 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012829 0.007407 0.000000 0.00000 SCALE2 0.000000 0.014813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004753 0.00000