PDB Short entry for 4CRU HEADER GENE REGULATION 01-MAR-14 4CRU TITLE COMPLEX OF HUMAN CNOT9 AND CNOT1 INCLUDING ONE TRYPTOPHAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CNOT1 CN9BD DOMAIN, DUF3819, RESIDUES 1356-1607; COMPND 5 SYNONYM: CNOT1, CCR4-ASSOCIATED FACTOR 1, NEGATIVE REGULATOR OF COMPND 6 TRANSCRIPTION SUBUNIT 1 HOMOLOG, NOT1H, HNOT1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELL DIFFERENTIATION PROTEIN RCD1 HOMOLOG; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: CNOT9 ARM DOMAIN, RESIDUES 19-285; COMPND 12 SYNONYM: CNOT9, CAF40 HOMOLOGG, RCD-1, CCR4-NOT TRANSCRIPTION COMPLEX COMPND 13 SUBUNIT 9, RCD-1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCN(PNYC); SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETMCN(PNEA) KEYWDS GENE REGULATION, TNRC6 BINDING, MIRISC, MRNA SILENCING, MRNA KEYWDS 2 DEADENYLATION, ARGONAUTE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,A.BOLAND,E.IZAURRALDE,O.WEICHENRIEDER REVDAT 4 20-DEC-23 4CRU 1 REMARK REVDAT 3 18-JUN-14 4CRU 1 JRNL REVDAT 2 28-MAY-14 4CRU 1 ATOM REVDAT 1 07-MAY-14 4CRU 0 JRNL AUTH Y.CHEN,A.BOLAND,D.KUZUOGLU-OZTURK,P.BAWANKAR,B.LOH, JRNL AUTH 2 C.T.CHANG,O.WEICHENRIEDER,E.IZAURRALDE JRNL TITL A DDX6-CNOT1 COMPLEX AND W-BINDING POCKETS IN CNOT9 REVEAL JRNL TITL 2 DIRECT LINKS BETWEEN MIRNA TARGET RECOGNITION AND SILENCING JRNL REF MOL.CELL V. 54 737 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 24768540 JRNL DOI 10.1016/J.MOLCEL.2014.03.034 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 87644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 76.3890 - 5.1264 0.99 2869 151 0.1629 0.1761 REMARK 3 2 5.1264 - 4.0691 0.99 2815 148 0.1373 0.1373 REMARK 3 3 4.0691 - 3.5547 0.99 2782 147 0.1528 0.1635 REMARK 3 4 3.5547 - 3.2297 0.99 2793 147 0.1556 0.2122 REMARK 3 5 3.2297 - 2.9982 0.99 2775 146 0.1613 0.1747 REMARK 3 6 2.9982 - 2.8214 1.00 2783 147 0.1563 0.1779 REMARK 3 7 2.8214 - 2.6801 1.00 2794 147 0.1509 0.1675 REMARK 3 8 2.6801 - 2.5634 1.00 2799 148 0.1468 0.1489 REMARK 3 9 2.5634 - 2.4648 1.00 2782 147 0.1442 0.1782 REMARK 3 10 2.4648 - 2.3797 1.00 2764 147 0.1415 0.1654 REMARK 3 11 2.3797 - 2.3053 1.00 2801 145 0.1456 0.1613 REMARK 3 12 2.3053 - 2.2394 1.00 2765 146 0.1529 0.1705 REMARK 3 13 2.2394 - 2.1804 1.00 2751 145 0.1528 0.1970 REMARK 3 14 2.1804 - 2.1272 1.00 2790 147 0.1590 0.1645 REMARK 3 15 2.1272 - 2.0789 1.00 2800 147 0.1593 0.1977 REMARK 3 16 2.0789 - 2.0346 1.00 2760 147 0.1615 0.1854 REMARK 3 17 2.0346 - 1.9939 1.00 2798 146 0.1670 0.1819 REMARK 3 18 1.9939 - 1.9563 1.00 2741 145 0.1752 0.2074 REMARK 3 19 1.9563 - 1.9214 1.00 2768 146 0.1813 0.2183 REMARK 3 20 1.9214 - 1.8888 0.99 2778 148 0.1873 0.2020 REMARK 3 21 1.8888 - 1.8583 0.99 2738 142 0.1911 0.2069 REMARK 3 22 1.8583 - 1.8297 1.00 2779 146 0.1947 0.2020 REMARK 3 23 1.8297 - 1.8028 1.00 2780 146 0.1988 0.2305 REMARK 3 24 1.8028 - 1.7774 0.99 2785 147 0.2040 0.2118 REMARK 3 25 1.7774 - 1.7534 1.00 2717 143 0.2180 0.2231 REMARK 3 26 1.7534 - 1.7306 1.00 2757 149 0.2205 0.2736 REMARK 3 27 1.7306 - 1.7090 0.99 2789 143 0.2292 0.2607 REMARK 3 28 1.7090 - 1.6884 0.99 2750 146 0.2488 0.3144 REMARK 3 29 1.6884 - 1.6688 0.99 2745 143 0.2626 0.2878 REMARK 3 30 1.6688 - 1.6500 0.99 2708 146 0.2731 0.3089 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4200 REMARK 3 ANGLE : 1.266 5699 REMARK 3 CHIRALITY : 0.053 660 REMARK 3 PLANARITY : 0.008 732 REMARK 3 DIHEDRAL : 14.361 1610 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1351 THROUGH 1386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6746 -11.8078 35.3131 REMARK 3 T TENSOR REMARK 3 T11: 0.4685 T22: 0.3567 REMARK 3 T33: 0.4725 T12: 0.0495 REMARK 3 T13: -0.0989 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 0.6307 L22: 0.8122 REMARK 3 L33: 0.4007 L12: -0.0692 REMARK 3 L13: -0.2442 L23: -0.1979 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: 0.3369 S13: -0.4558 REMARK 3 S21: -0.1155 S22: -0.0355 S23: -0.2840 REMARK 3 S31: 0.1802 S32: 0.1518 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 1387 THROUGH 1476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2356 0.9758 35.4551 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.2289 REMARK 3 T33: 0.2673 T12: 0.0195 REMARK 3 T13: -0.0312 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.4358 L22: 1.0909 REMARK 3 L33: 1.0840 L12: -0.1731 REMARK 3 L13: 1.0625 L23: 0.0257 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.0262 S13: 0.1791 REMARK 3 S21: 0.0803 S22: -0.0184 S23: -0.2670 REMARK 3 S31: 0.0668 S32: 0.1796 S33: 0.0035 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 1477 THROUGH 1522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4647 -2.6698 32.3027 REMARK 3 T TENSOR REMARK 3 T11: 0.2547 T22: 0.2960 REMARK 3 T33: 0.3199 T12: 0.0555 REMARK 3 T13: -0.0510 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.2592 L22: 1.8601 REMARK 3 L33: 1.5451 L12: 0.4561 REMARK 3 L13: 1.3760 L23: 0.0731 REMARK 3 S TENSOR REMARK 3 S11: 0.0844 S12: 0.5085 S13: -0.2109 REMARK 3 S21: -0.0658 S22: -0.0886 S23: -0.4565 REMARK 3 S31: 0.1679 S32: 0.3497 S33: 0.0010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 1523 THROUGH 1542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3517 8.0689 46.9966 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.5943 REMARK 3 T33: 0.4051 T12: -0.0291 REMARK 3 T13: 0.0212 T23: -0.0776 REMARK 3 L TENSOR REMARK 3 L11: 0.1018 L22: 0.1362 REMARK 3 L33: 0.1026 L12: 0.0279 REMARK 3 L13: 0.0323 L23: -0.0887 REMARK 3 S TENSOR REMARK 3 S11: 0.1354 S12: -0.8781 S13: 0.6857 REMARK 3 S21: 0.3259 S22: 0.0674 S23: -0.0531 REMARK 3 S31: -0.2182 S32: -0.1978 S33: -0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 1543 THROUGH 1552 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6348 7.3738 29.3582 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.3786 REMARK 3 T33: 0.2855 T12: 0.0272 REMARK 3 T13: 0.0239 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 0.0166 L22: 0.0403 REMARK 3 L33: 0.0276 L12: 0.0244 REMARK 3 L13: 0.0166 L23: 0.0393 REMARK 3 S TENSOR REMARK 3 S11: 0.0932 S12: 0.2911 S13: 0.1951 REMARK 3 S21: -0.0812 S22: -0.1053 S23: 0.2280 REMARK 3 S31: -0.1017 S32: -0.3352 S33: 0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 1553 THROUGH 1588 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2471 -8.3722 33.4255 REMARK 3 T TENSOR REMARK 3 T11: 0.3222 T22: 0.2952 REMARK 3 T33: 0.3814 T12: -0.0762 REMARK 3 T13: 0.0090 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.5183 L22: 0.2670 REMARK 3 L33: 0.4858 L12: 0.2822 REMARK 3 L13: 0.0972 L23: -0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.0823 S13: -0.9013 REMARK 3 S21: 0.2589 S22: 0.0957 S23: 0.3302 REMARK 3 S31: 0.3248 S32: -0.2039 S33: -0.0190 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 1601 THROUGH 1604 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7998 31.8685 14.7150 REMARK 3 T TENSOR REMARK 3 T11: 0.9196 T22: 0.7092 REMARK 3 T33: 1.3247 T12: -0.1504 REMARK 3 T13: -0.0425 T23: 0.2750 REMARK 3 L TENSOR REMARK 3 L11: 0.0408 L22: 0.0121 REMARK 3 L33: 0.0069 L12: 0.0089 REMARK 3 L13: -0.0024 L23: -0.0080 REMARK 3 S TENSOR REMARK 3 S11: 0.0951 S12: -0.0366 S13: 0.0558 REMARK 3 S21: 0.0726 S22: 0.2044 S23: -0.1617 REMARK 3 S31: -0.0937 S32: 0.1601 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 16 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3735 -1.9820 18.6209 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.1949 REMARK 3 T33: 0.1717 T12: -0.0227 REMARK 3 T13: -0.0215 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.6679 L22: 1.7995 REMARK 3 L33: 1.4465 L12: -0.0636 REMARK 3 L13: -0.2715 L23: -0.0313 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: 0.2173 S13: -0.1281 REMARK 3 S21: -0.1596 S22: 0.0067 S23: 0.1376 REMARK 3 S31: 0.2061 S32: -0.1264 S33: -0.0017 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 148 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2697 20.0055 4.6239 REMARK 3 T TENSOR REMARK 3 T11: 0.3046 T22: 0.2720 REMARK 3 T33: 0.2555 T12: -0.0236 REMARK 3 T13: 0.0176 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 2.1771 L22: 2.7121 REMARK 3 L33: 2.7680 L12: 0.9101 REMARK 3 L13: -1.0806 L23: -1.1104 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.2152 S13: 0.1467 REMARK 3 S21: -0.0546 S22: 0.0495 S23: 0.0359 REMARK 3 S31: -0.1035 S32: 0.0241 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE REFINED IN THE RIDING REMARK 3 POSITIONS. TLS PARAMETERS WERE REFINED. SIDE CHAINS OF THE REMARK 3 FOLLOWING RESIDUES HAVE DOUBLE CONFORMATIONS. CHAIN A, RESIDUES REMARK 3 1360, 1497, 1532, 1539, 1552, 1558. CHAIN B, RESIDUES 133. SIDE REMARK 3 CHAINS OF THE FOLLOWING RESIDUES WERE TRUNCATED AT CB ATOMS. REMARK 3 CHAIN A, RESIDUES 1478, 1587, 1588, 1601. CHAIN B, RESIDUES 16, REMARK 3 18. THE FOLLOWING RESIDUES ARE DISORDERED. CHAIN A, RESIDUES REMARK 3 1350, 1589 TO 1600, 1606-1607. CHAIN B, RESIDUES 13 TO 15. REMARK 4 REMARK 4 4CRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 76.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2FV2 CHAIN A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES (PH=6.0), 8% PEG6000, 0.08M REMARK 280 MG-CHLORIDE, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.40000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.40000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2011 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1350 REMARK 465 SER A 1589 REMARK 465 GLN A 1590 REMARK 465 PRO A 1591 REMARK 465 THR A 1592 REMARK 465 GLY A 1593 REMARK 465 PHE A 1594 REMARK 465 LEU A 1595 REMARK 465 ALA A 1596 REMARK 465 GLN A 1597 REMARK 465 PRO A 1598 REMARK 465 MET A 1599 REMARK 465 LYS A 1600 REMARK 465 THR A 1605 REMARK 465 ASP A 1606 REMARK 465 ASP A 1607 REMARK 465 GLY B 13 REMARK 465 PRO B 14 REMARK 465 HIS B 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1478 CG CD NE CZ NH1 NH2 REMARK 470 ASP A1587 CG OD1 OD2 REMARK 470 LEU A1588 CG CD1 CD2 REMARK 470 GLN A1601 CG CD OE1 NE2 REMARK 470 MET B 16 CG SD CE REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 1528 O HOH A 2187 2.12 REMARK 500 OE1 GLN B 98 O HOH B 2060 2.17 REMARK 500 O HOH B 2052 O HOH B 2090 2.17 REMARK 500 O HOH A 2017 O HOH B 2039 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1586 -53.24 -122.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2020 DISTANCE = 6.29 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CRV RELATED DB: PDB REMARK 900 COMPLEX OF HUMAN CNOT9 AND CNOT1 INCLUDING TWO TRYPTOPHANS REMARK 900 RELATED ID: 2FV2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF HUMAN RCD-1 CONSERVED REGION REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SIX N-TERMINAL RESIDUES REMAIN FROM THE EXPRESSION TAG REMARK 999 OF CHAIN A. REMARK 999 THE SIX N-TERMINAL RESIDUES REMAIN FROM THE EXPRESSION TAG REMARK 999 OF CHAIN B. DBREF 4CRU A 1356 1607 UNP A5YKK6 CNOT1_HUMAN 1356 1607 DBREF 4CRU B 19 285 UNP Q92600 RCD1_HUMAN 19 285 SEQADV 4CRU GLY A 1350 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRU PRO A 1351 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRU HIS A 1352 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRU MET A 1353 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRU LEU A 1354 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRU GLU A 1355 UNP A5YKK6 EXPRESSION TAG SEQADV 4CRU GLY B 13 UNP Q92600 EXPRESSION TAG SEQADV 4CRU PRO B 14 UNP Q92600 EXPRESSION TAG SEQADV 4CRU HIS B 15 UNP Q92600 EXPRESSION TAG SEQADV 4CRU MET B 16 UNP Q92600 EXPRESSION TAG SEQADV 4CRU LEU B 17 UNP Q92600 EXPRESSION TAG SEQADV 4CRU GLU B 18 UNP Q92600 EXPRESSION TAG SEQRES 1 A 258 GLY PRO HIS MET LEU GLU GLN TYR SER TYR HIS ASP ILE SEQRES 2 A 258 ASN VAL TYR SER LEU ALA GLY LEU ALA PRO HIS ILE THR SEQRES 3 A 258 LEU ASN PRO THR ILE PRO LEU PHE GLN ALA HIS PRO GLN SEQRES 4 A 258 LEU LYS GLN CYS VAL ARG GLN ALA ILE GLU ARG ALA VAL SEQRES 5 A 258 GLN GLU LEU VAL HIS PRO VAL VAL ASP ARG SER ILE LYS SEQRES 6 A 258 ILE ALA MET THR THR CYS GLU GLN ILE VAL ARG LYS ASP SEQRES 7 A 258 PHE ALA LEU ASP SER GLU GLU SER ARG MET ARG ILE ALA SEQRES 8 A 258 ALA HIS HIS MET MET ARG ASN LEU THR ALA GLY MET ALA SEQRES 9 A 258 MET ILE THR CYS ARG GLU PRO LEU LEU MET SER ILE SER SEQRES 10 A 258 THR ASN LEU LYS ASN SER PHE ALA SER ALA LEU ARG THR SEQRES 11 A 258 ALA SER PRO GLN GLN ARG GLU MET MET ASP GLN ALA ALA SEQRES 12 A 258 ALA GLN LEU ALA GLN ASP ASN CYS GLU LEU ALA CYS CYS SEQRES 13 A 258 PHE ILE GLN LYS THR ALA VAL GLU LYS ALA GLY PRO GLU SEQRES 14 A 258 MET ASP LYS ARG LEU ALA THR GLU PHE GLU LEU ARG LYS SEQRES 15 A 258 HIS ALA ARG GLN GLU GLY ARG ARG TYR CYS ASP PRO VAL SEQRES 16 A 258 VAL LEU THR TYR GLN ALA GLU ARG MET PRO GLU GLN ILE SEQRES 17 A 258 ARG LEU LYS VAL GLY GLY VAL ASP PRO LYS GLN LEU ALA SEQRES 18 A 258 VAL TYR GLU GLU PHE ALA ARG ASN VAL PRO GLY PHE LEU SEQRES 19 A 258 PRO THR ASN ASP LEU SER GLN PRO THR GLY PHE LEU ALA SEQRES 20 A 258 GLN PRO MET LYS GLN ALA TRP ALA THR ASP ASP SEQRES 1 B 273 GLY PRO HIS MET LEU GLU ARG GLU LYS ILE TYR GLN TRP SEQRES 2 B 273 ILE ASN GLU LEU SER SER PRO GLU THR ARG GLU ASN ALA SEQRES 3 B 273 LEU LEU GLU LEU SER LYS LYS ARG GLU SER VAL PRO ASP SEQRES 4 B 273 LEU ALA PRO MET LEU TRP HIS SER PHE GLY THR ILE ALA SEQRES 5 B 273 ALA LEU LEU GLN GLU ILE VAL ASN ILE TYR PRO SER ILE SEQRES 6 B 273 ASN PRO PRO THR LEU THR ALA HIS GLN SER ASN ARG VAL SEQRES 7 B 273 CYS ASN ALA LEU ALA LEU LEU GLN CYS VAL ALA SER HIS SEQRES 8 B 273 PRO GLU THR ARG SER ALA PHE LEU ALA ALA HIS ILE PRO SEQRES 9 B 273 LEU PHE LEU TYR PRO PHE LEU HIS THR VAL SER LYS THR SEQRES 10 B 273 ARG PRO PHE GLU TYR LEU ARG LEU THR SER LEU GLY VAL SEQRES 11 B 273 ILE GLY ALA LEU VAL LYS THR ASP GLU GLN GLU VAL ILE SEQRES 12 B 273 ASN PHE LEU LEU THR THR GLU ILE ILE PRO LEU CYS LEU SEQRES 13 B 273 ARG ILE MET GLU SER GLY SER GLU LEU SER LYS THR VAL SEQRES 14 B 273 ALA THR PHE ILE LEU GLN LYS ILE LEU LEU ASP ASP THR SEQRES 15 B 273 GLY LEU ALA TYR ILE CYS GLN THR TYR GLU ARG PHE SER SEQRES 16 B 273 HIS VAL ALA MET ILE LEU GLY LYS MET VAL LEU GLN LEU SEQRES 17 B 273 SER LYS GLU PRO SER ALA ARG LEU LEU LYS HIS VAL VAL SEQRES 18 B 273 ARG CYS TYR LEU ARG LEU SER ASP ASN PRO ARG ALA ARG SEQRES 19 B 273 GLU ALA LEU ARG GLN CYS LEU PRO ASP GLN LEU LYS ASP SEQRES 20 B 273 THR THR PHE ALA GLN VAL LEU LYS ASP ASP THR THR THR SEQRES 21 B 273 LYS ARG TRP LEU ALA GLN LEU VAL LYS ASN LEU GLN GLU HET GOL A1801 14 HET GOL B1801 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *474(H2 O) HELIX 1 1 PRO A 1381 ALA A 1385 1 5 HELIX 2 2 VAL A 1393 ASP A 1427 1 35 HELIX 3 3 GLU A 1434 ALA A 1476 1 43 HELIX 4 4 PRO A 1482 ARG A 1522 1 41 HELIX 5 5 ALA A 1524 GLN A 1535 1 12 HELIX 6 6 PRO A 1543 ARG A 1552 1 10 HELIX 7 7 ALA A 1570 ARG A 1577 1 8 HELIX 8 8 LEU B 17 ASN B 27 1 11 HELIX 9 9 PRO B 32 SER B 43 1 12 HELIX 10 10 LEU B 52 HIS B 58 1 7 HELIX 11 11 THR B 62 VAL B 71 1 10 HELIX 12 12 ALA B 84 SER B 102 1 19 HELIX 13 13 ARG B 107 ALA B 112 1 6 HELIX 14 14 TYR B 120 LEU B 123 1 4 HELIX 15 15 ARG B 130 VAL B 147 1 18 HELIX 16 16 GLN B 152 THR B 160 1 9 HELIX 17 17 ILE B 164 SER B 173 1 10 HELIX 18 18 GLU B 176 LEU B 191 1 16 HELIX 19 19 ASP B 193 ILE B 199 1 7 HELIX 20 20 TYR B 203 LYS B 222 1 20 HELIX 21 21 ALA B 226 LEU B 239 1 14 HELIX 22 22 PRO B 243 CYS B 252 1 10 HELIX 23 23 THR B 270 GLN B 284 1 15 CISPEP 1 ASN B 78 PRO B 79 0 -0.18 SITE 1 AC1 3 LEU A1367 HOH A2072 HOH A2108 SITE 1 AC2 5 SER B 43 ARG B 46 ASN B 92 TYR B 134 SITE 2 AC2 5 HOH B2097 CRYST1 154.800 67.240 72.300 90.00 99.64 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006460 0.000000 0.001097 0.00000 SCALE2 0.000000 0.014872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014029 0.00000