PDB Short entry for 4CSY HEADER CELL ADHESION 11-MAR-14 4CSY TITLE E-SELECTIN LECTIN, EGF-LIKE AND TWO SCR DOMAINS COMPLEXED WITH SIALYL TITLE 2 LEWIS X COMPND MOL_ID: 1; COMPND 2 MOLECULE: E-SELECTIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LECTIN DOMAIN, EGF-LIKE DOMAIN, SHORT CONSENSUS REPEAT COMPND 5 DOMAIN 1, SHORT CONSENSUS REPEAT DOMAIN 2, RESIDUES 22-301; COMPND 6 SYNONYM: CD62 ANTIGEN-LIKE FAMILY MEMBER E, ENDOTHELIAL LEUKOCYTE COMPND 7 ADHESION MOLECULE 1, ELAM-1, LEUKOCYTE-ENDOTHELIAL CELL ADHESION COMPND 8 MOLECULE 2, LECAM2; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: N-ACETYLGLUCOSAMINE RESIDUES ATTACHED TO ASN4, ASN124, COMPND 11 ASN139, ASN158, ASN178, ASN182, AND ASN244 ON BOTH CHAINS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: CYTOKINE-INDUCED VASCULAR ENDOTHELIAL CELLS; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: CHINESE HAMSTER OVARY (CHO) CELLS; SOURCE 10 EXPRESSION_SYSTEM_TISSUE: OVARY; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PCDNA3.1 KEYWDS CELL-ADHESION, HUMAN LECTIN, C-TYPE LECTIN, INFLAMMATION, LEUKOCYTE, KEYWDS 2 SIALYL LEWIS X, SLEX, PROTEIN CONFORMATION, LIGAND-INDUCED KEYWDS 3 CONFORMATIONAL CHANGE, CATCH- BOND, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR R.C.PRESTON,R.P.JAKOB,F.P.C.BINDER,C.P.SAGER,B.ERNST,T.MAIER REVDAT 5 20-DEC-23 4CSY 1 HETSYN REVDAT 4 29-JUL-20 4CSY 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 27-JAN-16 4CSY 1 JRNL REVDAT 2 08-JUL-15 4CSY 1 JRNL REVDAT 1 24-SEP-14 4CSY 0 JRNL AUTH R.C.PRESTON,R.P.JAKOB,F.P.BINDER,C.P.SAGER,B.ERNST,T.MAIER JRNL TITL E-SELECTIN LIGAND COMPLEXES ADOPT AN EXTENDED HIGH-AFFINITY JRNL TITL 2 CONFORMATION. JRNL REF J.MOL.CELL.BIOL. V. 8 62 2016 JRNL REFN ESSN 1759-4685 JRNL PMID 26117840 JRNL DOI 10.1093/JMCB/MJV046 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 25216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1298 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.45 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2829 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2417 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2702 REMARK 3 BIN R VALUE (WORKING SET) : 0.2406 REMARK 3 BIN FREE R VALUE : 0.2629 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4358 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 312 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 14.31050 REMARK 3 B22 (A**2) : -6.66010 REMARK 3 B33 (A**2) : -7.65040 REMARK 3 B12 (A**2) : -0.49280 REMARK 3 B13 (A**2) : -0.42530 REMARK 3 B23 (A**2) : -6.03330 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.507 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.442 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.261 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.471 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.268 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4854 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6664 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1672 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 135 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 694 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4854 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 704 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5465 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.16 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.78 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 5.5214 25.9503 -13.7994 REMARK 3 T TENSOR REMARK 3 T11: -0.2104 T22: 0.0134 REMARK 3 T33: -0.1586 T12: 0.0168 REMARK 3 T13: -0.0441 T23: 0.1041 REMARK 3 L TENSOR REMARK 3 L11: 4.7739 L22: 0.2739 REMARK 3 L33: 0.8243 L12: -0.4265 REMARK 3 L13: 1.2899 L23: -0.1991 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: 0.0026 S13: 0.5059 REMARK 3 S21: 0.1054 S22: 0.0137 S23: 0.0437 REMARK 3 S31: 0.0801 S32: -0.0112 S33: -0.0536 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -5.7840 8.4486 -27.4944 REMARK 3 T TENSOR REMARK 3 T11: -0.2139 T22: -0.0078 REMARK 3 T33: -0.0973 T12: -0.0314 REMARK 3 T13: 0.0332 T23: 0.1113 REMARK 3 L TENSOR REMARK 3 L11: 4.9872 L22: 0.6541 REMARK 3 L33: 0.3069 L12: 1.2390 REMARK 3 L13: -0.7044 L23: -0.2172 REMARK 3 S TENSOR REMARK 3 S11: 0.0508 S12: 0.4019 S13: -0.2560 REMARK 3 S21: 0.1062 S22: -0.0762 S23: -0.0379 REMARK 3 S31: 0.0343 S32: 0.0628 S33: 0.0254 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDER IN LOOPS 227-231, 254-259 AND REMARK 3 N-TERMINAL RESIDUES 278-280 BUILT ACCORDING TO ACCOMPANYING REMARK 3 DEPOSITION EBI-57874. REMARK 4 REMARK 4 4CSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059945. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99985 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25239 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 28.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1G1S, 3GOV, 1H04 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13 % PEG8000, HEPES, MOPS PH 6.2, REMARK 280 CACL2, 10MM SLEX-OTMSE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 28 -124.60 -91.59 REMARK 500 ALA A 28 -124.60 -92.85 REMARK 500 ILE A 29 120.67 -34.86 REMARK 500 TYR A 48 -159.89 68.52 REMARK 500 LYS A 86 162.79 62.97 REMARK 500 ASN A 139 -132.29 -155.56 REMARK 500 HIS A 167 16.75 81.54 REMARK 500 TYR A 181 128.76 -38.45 REMARK 500 ASN A 182 -3.92 82.54 REMARK 500 ASN A 244 -9.33 95.42 REMARK 500 ALA B 28 -86.60 -94.70 REMARK 500 ILE B 29 142.00 -21.81 REMARK 500 TYR B 48 -160.88 68.83 REMARK 500 LYS B 86 159.35 63.61 REMARK 500 SER B 128 19.72 56.75 REMARK 500 ASN B 139 -132.95 -154.50 REMARK 500 ASN B 244 -8.75 91.28 REMARK 500 LYS B 279 -108.57 -94.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2066 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2067 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 9.11 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 SIALYL LEWIS X METHYL GLUCOSIDE (DRG): SIALYL-LEWIS-X REMARK 600 TETRASACCHARIDE, WITH A TRIMETHYLSILYLETHYL PROTECTING REMARK 600 GROUP, ONLY METHYL GLUCOSIDE WAS MODELED REMARK 600 N-ACETYL-D-GLUCOSAMINE (NAG): REMAINS FROM ENDOGLYCOSIDASE REMARK 600 H TREATMENT REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASN A 82 OD1 68.6 REMARK 620 3 GLU A 88 OE1 134.1 78.0 REMARK 620 4 ASN A 105 OD1 68.2 132.8 148.7 REMARK 620 5 ASP A 106 O 129.2 150.4 73.4 75.3 REMARK 620 6 ASP A 106 OD1 71.5 92.4 79.7 91.6 75.5 REMARK 620 7 FUC C 4 O3 139.3 108.3 80.2 92.4 74.1 147.2 REMARK 620 8 FUC C 4 O4 67.4 77.8 135.0 68.7 128.8 138.5 72.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 306 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 80 OE1 REMARK 620 2 ASN B 82 OD1 69.6 REMARK 620 3 GLU B 88 OE1 141.8 81.8 REMARK 620 4 ASN B 105 OD1 63.4 129.6 148.3 REMARK 620 5 ASP B 106 OD1 74.1 95.8 84.5 88.3 REMARK 620 6 ASP B 106 O 125.7 154.6 74.6 73.8 72.8 REMARK 620 7 FUC D 4 O4 63.7 74.6 132.7 69.3 137.5 129.1 REMARK 620 8 FUC D 4 O3 134.9 107.8 77.1 93.4 147.3 76.4 72.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CSS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FIMH IN COMPLEX WITH A SULFONAMIDE BIPHENYL REMARK 900 ALPHA D-MANNOSIDE REMARK 900 RELATED ID: 4CST RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FIMH IN COMPLEX WITH 3'-CHLORO- 4'-(ALPHA-D- REMARK 900 MANNOPYRANOSYLOXY)-BIPHENYL-4-CARBONITRILE REMARK 999 REMARK 999 SEQUENCE REMARK 999 WITHOUT N-TERMINAL SECRETION SIGNAL (AA. 1-21). SEQUENCE REMARK 999 OF MATURE PROTEIN STARTS WITH RESIDUE 1 FOR COMPATIBILITY REMARK 999 WITH PREVIOUS E-SELECTIN STRUCTURES (1ESL, 1G1T). DBREF 4CSY A 1 280 UNP P16581 LYAM2_HUMAN 22 301 DBREF 4CSY B 1 280 UNP P16581 LYAM2_HUMAN 22 301 SEQRES 1 A 280 TRP SER TYR ASN THR SER THR GLU ALA MET THR TYR ASP SEQRES 2 A 280 GLU ALA SER ALA TYR CYS GLN GLN ARG TYR THR HIS LEU SEQRES 3 A 280 VAL ALA ILE GLN ASN LYS GLU GLU ILE GLU TYR LEU ASN SEQRES 4 A 280 SER ILE LEU SER TYR SER PRO SER TYR TYR TRP ILE GLY SEQRES 5 A 280 ILE ARG LYS VAL ASN ASN VAL TRP VAL TRP VAL GLY THR SEQRES 6 A 280 GLN LYS PRO LEU THR GLU GLU ALA LYS ASN TRP ALA PRO SEQRES 7 A 280 GLY GLU PRO ASN ASN ARG GLN LYS ASP GLU ASP CYS VAL SEQRES 8 A 280 GLU ILE TYR ILE LYS ARG GLU LYS ASP VAL GLY MET TRP SEQRES 9 A 280 ASN ASP GLU ARG CYS SER LYS LYS LYS LEU ALA LEU CYS SEQRES 10 A 280 TYR THR ALA ALA CYS THR ASN THR SER CYS SER GLY HIS SEQRES 11 A 280 GLY GLU CYS VAL GLU THR ILE ASN ASN TYR THR CYS LYS SEQRES 12 A 280 CYS ASP PRO GLY PHE SER GLY LEU LYS CYS GLU GLN ILE SEQRES 13 A 280 VAL ASN CYS THR ALA LEU GLU SER PRO GLU HIS GLY SER SEQRES 14 A 280 LEU VAL CYS SER HIS PRO LEU GLY ASN PHE SER TYR ASN SEQRES 15 A 280 SER SER CYS SER ILE SER CYS ASP ARG GLY TYR LEU PRO SEQRES 16 A 280 SER SER MET GLU THR MET GLN CYS MET SER SER GLY GLU SEQRES 17 A 280 TRP SER ALA PRO ILE PRO ALA CYS ASN VAL VAL GLU CYS SEQRES 18 A 280 ASP ALA VAL THR ASN PRO ALA ASN GLY PHE VAL GLU CYS SEQRES 19 A 280 PHE GLN ASN PRO GLY SER PHE PRO TRP ASN THR THR CYS SEQRES 20 A 280 THR PHE ASP CYS GLU GLU GLY PHE GLU LEU MET GLY ALA SEQRES 21 A 280 GLN SER LEU GLN CYS THR SER SER GLY ASN TRP ASP ASN SEQRES 22 A 280 GLU LYS PRO THR CYS LYS ALA SEQRES 1 B 280 TRP SER TYR ASN THR SER THR GLU ALA MET THR TYR ASP SEQRES 2 B 280 GLU ALA SER ALA TYR CYS GLN GLN ARG TYR THR HIS LEU SEQRES 3 B 280 VAL ALA ILE GLN ASN LYS GLU GLU ILE GLU TYR LEU ASN SEQRES 4 B 280 SER ILE LEU SER TYR SER PRO SER TYR TYR TRP ILE GLY SEQRES 5 B 280 ILE ARG LYS VAL ASN ASN VAL TRP VAL TRP VAL GLY THR SEQRES 6 B 280 GLN LYS PRO LEU THR GLU GLU ALA LYS ASN TRP ALA PRO SEQRES 7 B 280 GLY GLU PRO ASN ASN ARG GLN LYS ASP GLU ASP CYS VAL SEQRES 8 B 280 GLU ILE TYR ILE LYS ARG GLU LYS ASP VAL GLY MET TRP SEQRES 9 B 280 ASN ASP GLU ARG CYS SER LYS LYS LYS LEU ALA LEU CYS SEQRES 10 B 280 TYR THR ALA ALA CYS THR ASN THR SER CYS SER GLY HIS SEQRES 11 B 280 GLY GLU CYS VAL GLU THR ILE ASN ASN TYR THR CYS LYS SEQRES 12 B 280 CYS ASP PRO GLY PHE SER GLY LEU LYS CYS GLU GLN ILE SEQRES 13 B 280 VAL ASN CYS THR ALA LEU GLU SER PRO GLU HIS GLY SER SEQRES 14 B 280 LEU VAL CYS SER HIS PRO LEU GLY ASN PHE SER TYR ASN SEQRES 15 B 280 SER SER CYS SER ILE SER CYS ASP ARG GLY TYR LEU PRO SEQRES 16 B 280 SER SER MET GLU THR MET GLN CYS MET SER SER GLY GLU SEQRES 17 B 280 TRP SER ALA PRO ILE PRO ALA CYS ASN VAL VAL GLU CYS SEQRES 18 B 280 ASP ALA VAL THR ASN PRO ALA ASN GLY PHE VAL GLU CYS SEQRES 19 B 280 PHE GLN ASN PRO GLY SER PHE PRO TRP ASN THR THR CYS SEQRES 20 B 280 THR PHE ASP CYS GLU GLU GLY PHE GLU LEU MET GLY ALA SEQRES 21 B 280 GLN SER LEU GLN CYS THR SER SER GLY ASN TRP ASP ASN SEQRES 22 B 280 GLU LYS PRO THR CYS LYS ALA MODRES 4CSY ASN A 4 ASN GLYCOSYLATION SITE MODRES 4CSY ASN A 124 ASN GLYCOSYLATION SITE MODRES 4CSY ASN A 139 ASN GLYCOSYLATION SITE MODRES 4CSY ASN A 158 ASN GLYCOSYLATION SITE MODRES 4CSY ASN A 178 ASN GLYCOSYLATION SITE MODRES 4CSY ASN A 182 ASN GLYCOSYLATION SITE MODRES 4CSY ASN A 244 ASN GLYCOSYLATION SITE MODRES 4CSY ASN B 4 ASN GLYCOSYLATION SITE MODRES 4CSY ASN B 124 ASN GLYCOSYLATION SITE MODRES 4CSY ASN B 139 ASN GLYCOSYLATION SITE MODRES 4CSY ASN B 158 ASN GLYCOSYLATION SITE MODRES 4CSY ASN B 178 ASN GLYCOSYLATION SITE MODRES 4CSY ASN B 182 ASN GLYCOSYLATION SITE MODRES 4CSY ASN B 244 ASN GLYCOSYLATION SITE HET MAG C 1 16 HET GAL C 2 11 HET SIA C 3 20 HET FUC C 4 10 HET MAG D 1 16 HET GAL D 2 11 HET SIA D 3 20 HET FUC D 4 10 HET NAG A 281 14 HET NAG A 282 14 HET NAG A 283 14 HET NAG A 284 14 HET NAG A 285 14 HET NAG A 286 14 HET NAG A 287 14 HET CA A 306 1 HET NAG B 281 14 HET NAG B 282 14 HET NAG B 283 14 HET NAG B 284 14 HET NAG B 285 14 HET NAG B 286 14 HET NAG B 287 14 HET CA B 306 1 HETNAM MAG METHYL 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSIDE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN MAG BETA-METHYL-N-ACETYL-D-GLUCOSAMINE; METHYL 2-ACETAMIDO- HETSYN 2 MAG 2-DEOXY-BETA-D-GLUCOSIDE; METHYL 2-ACETAMIDO-2-DEOXY- HETSYN 3 MAG D-GLUCOSIDE; METHYL 2-ACETAMIDO-2-DEOXY-GLUCOSIDE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 MAG 2(C9 H17 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 SIA 2(C11 H19 N O9) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 NAG 14(C8 H15 N O6) FORMUL 12 CA 2(CA 2+) FORMUL 21 HOH *127(H2 O) HELIX 1 1 THR A 11 ARG A 22 1 12 HELIX 2 2 ASN A 31 LEU A 42 1 12 HELIX 3 3 THR B 11 ARG B 22 1 12 HELIX 4 4 ASN B 31 LEU B 42 1 12 SHEET 1 AA 2 SER A 2 THR A 5 0 SHEET 2 AA 2 LEU A 114 THR A 119 -1 O CYS A 117 N ASN A 4 SHEET 1 AB 2 HIS A 25 LEU A 26 0 SHEET 2 AB 2 LEU A 114 THR A 119 -1 O TYR A 118 N HIS A 25 SHEET 1 AC 5 LYS A 67 PRO A 68 0 SHEET 2 AC 5 VAL A 59 TRP A 62 1 N TRP A 62 O LYS A 67 SHEET 3 AC 5 TYR A 49 VAL A 56 -1 O ARG A 54 N VAL A 61 SHEET 4 AC 5 CYS A 90 ILE A 93 -1 O VAL A 91 N ILE A 51 SHEET 5 AC 5 TRP A 104 GLU A 107 -1 O ASN A 105 N GLU A 92 SHEET 1 AD 5 LYS A 67 PRO A 68 0 SHEET 2 AD 5 VAL A 59 TRP A 62 1 N TRP A 62 O LYS A 67 SHEET 3 AD 5 TYR A 49 VAL A 56 -1 O ARG A 54 N VAL A 61 SHEET 4 AD 5 LEU A 114 THR A 119 1 O LEU A 114 N TRP A 50 SHEET 5 AD 5 HIS A 25 LEU A 26 -1 O HIS A 25 N TYR A 118 SHEET 1 AE 2 GLY A 131 GLU A 135 0 SHEET 2 AE 2 TYR A 140 CYS A 144 -1 O THR A 141 N VAL A 134 SHEET 1 AF 2 PHE A 148 SER A 149 0 SHEET 2 AF 2 GLN A 155 ILE A 156 -1 O GLN A 155 N SER A 149 SHEET 1 AG 3 GLY A 168 SER A 173 0 SHEET 2 AG 3 SER A 184 CYS A 189 -1 O SER A 184 N SER A 173 SHEET 3 AG 3 MET A 201 GLN A 202 -1 O MET A 201 N CYS A 185 SHEET 1 AH 2 TYR A 193 PRO A 195 0 SHEET 2 AH 2 CYS A 216 VAL A 218 -1 O ASN A 217 N LEU A 194 SHEET 1 AI 3 GLY A 230 GLU A 233 0 SHEET 2 AI 3 THR A 246 CYS A 251 -1 O THR A 248 N GLU A 233 SHEET 3 AI 3 SER A 262 GLN A 264 -1 O LEU A 263 N CYS A 247 SHEET 1 AJ 2 GLU A 256 MET A 258 0 SHEET 2 AJ 2 THR A 277 LYS A 279 -1 O THR A 277 N MET A 258 SHEET 1 BA 2 SER B 2 THR B 5 0 SHEET 2 BA 2 LEU B 114 THR B 119 -1 O CYS B 117 N ASN B 4 SHEET 1 BB 2 HIS B 25 LEU B 26 0 SHEET 2 BB 2 LEU B 114 THR B 119 -1 O TYR B 118 N HIS B 25 SHEET 1 BC 5 LYS B 67 PRO B 68 0 SHEET 2 BC 5 VAL B 59 TRP B 62 1 N TRP B 62 O LYS B 67 SHEET 3 BC 5 TYR B 49 VAL B 56 -1 O ARG B 54 N VAL B 61 SHEET 4 BC 5 CYS B 90 ILE B 93 -1 O VAL B 91 N ILE B 51 SHEET 5 BC 5 TRP B 104 GLU B 107 -1 O ASN B 105 N GLU B 92 SHEET 1 BD 5 LYS B 67 PRO B 68 0 SHEET 2 BD 5 VAL B 59 TRP B 62 1 N TRP B 62 O LYS B 67 SHEET 3 BD 5 TYR B 49 VAL B 56 -1 O ARG B 54 N VAL B 61 SHEET 4 BD 5 LEU B 114 THR B 119 1 O LEU B 114 N TRP B 50 SHEET 5 BD 5 HIS B 25 LEU B 26 -1 O HIS B 25 N TYR B 118 SHEET 1 BE 2 GLY B 131 GLU B 135 0 SHEET 2 BE 2 TYR B 140 CYS B 144 -1 O THR B 141 N VAL B 134 SHEET 1 BF 2 PHE B 148 SER B 149 0 SHEET 2 BF 2 GLN B 155 ILE B 156 -1 O GLN B 155 N SER B 149 SHEET 1 BG 3 GLY B 168 SER B 173 0 SHEET 2 BG 3 SER B 184 CYS B 189 -1 O SER B 184 N SER B 173 SHEET 3 BG 3 MET B 201 GLN B 202 -1 O MET B 201 N CYS B 185 SHEET 1 BH 2 TYR B 193 PRO B 195 0 SHEET 2 BH 2 CYS B 216 VAL B 218 -1 O ASN B 217 N LEU B 194 SHEET 1 BI 3 GLY B 230 GLU B 233 0 SHEET 2 BI 3 THR B 246 CYS B 251 -1 O THR B 248 N GLU B 233 SHEET 3 BI 3 SER B 262 GLN B 264 -1 O LEU B 263 N CYS B 247 SHEET 1 BJ 2 LEU B 257 MET B 258 0 SHEET 2 BJ 2 THR B 277 CYS B 278 -1 O THR B 277 N MET B 258 SSBOND 1 CYS A 19 CYS A 117 1555 1555 2.06 SSBOND 2 CYS A 90 CYS A 109 1555 1555 2.06 SSBOND 3 CYS A 122 CYS A 133 1555 1555 2.06 SSBOND 4 CYS A 127 CYS A 142 1555 1555 2.05 SSBOND 5 CYS A 144 CYS A 153 1555 1555 2.08 SSBOND 6 CYS A 159 CYS A 203 1555 1555 2.02 SSBOND 7 CYS A 172 CYS A 185 1555 1555 2.07 SSBOND 8 CYS A 189 CYS A 216 1555 1555 2.04 SSBOND 9 CYS A 221 CYS A 265 1555 1555 2.03 SSBOND 10 CYS A 234 CYS A 247 1555 1555 2.06 SSBOND 11 CYS A 251 CYS A 278 1555 1555 2.04 SSBOND 12 CYS B 19 CYS B 117 1555 1555 2.06 SSBOND 13 CYS B 90 CYS B 109 1555 1555 2.05 SSBOND 14 CYS B 122 CYS B 133 1555 1555 2.05 SSBOND 15 CYS B 127 CYS B 142 1555 1555 2.05 SSBOND 16 CYS B 144 CYS B 153 1555 1555 2.07 SSBOND 17 CYS B 159 CYS B 203 1555 1555 2.03 SSBOND 18 CYS B 172 CYS B 185 1555 1555 2.06 SSBOND 19 CYS B 189 CYS B 216 1555 1555 2.04 SSBOND 20 CYS B 221 CYS B 265 1555 1555 2.02 SSBOND 21 CYS B 234 CYS B 247 1555 1555 2.06 SSBOND 22 CYS B 251 CYS B 278 1555 1555 2.04 LINK ND2 ASN A 4 C1 NAG A 285 1555 1555 1.43 LINK ND2 ASN A 124 C1 NAG A 286 1555 1555 1.43 LINK ND2 ASN A 139 C1 NAG A 282 1555 1555 1.44 LINK ND2 ASN A 158 C1 NAG A 283 1555 1555 1.43 LINK ND2 ASN A 178 C1 NAG A 284 1555 1555 1.44 LINK ND2 ASN A 182 C1 NAG A 281 1555 1555 1.43 LINK ND2 ASN A 244 C1 NAG A 287 1555 1555 1.43 LINK ND2 ASN B 4 C1 NAG B 285 1555 1555 1.43 LINK ND2 ASN B 124 C1 NAG B 286 1555 1555 1.42 LINK ND2 ASN B 139 C1 NAG B 282 1555 1555 1.44 LINK ND2 ASN B 158 C1 NAG B 283 1555 1555 1.43 LINK ND2 ASN B 178 C1 NAG B 284 1555 1555 1.43 LINK ND2 ASN B 182 C1 NAG B 281 1555 1555 1.44 LINK ND2 ASN B 244 C1 NAG B 287 1555 1555 1.43 LINK O4 MAG C 1 C1 GAL C 2 1555 1555 1.43 LINK O3 MAG C 1 C1 FUC C 4 1555 1555 1.47 LINK O3 GAL C 2 C2 SIA C 3 1555 1555 1.51 LINK O4 MAG D 1 C1 GAL D 2 1555 1555 1.43 LINK O3 MAG D 1 C1 FUC D 4 1555 1555 1.47 LINK O3 GAL D 2 C2 SIA D 3 1555 1555 1.51 LINK OE1 GLU A 80 CA CA A 306 1555 1555 2.94 LINK OD1 ASN A 82 CA CA A 306 1555 1555 2.49 LINK OE1 GLU A 88 CA CA A 306 1555 1555 2.51 LINK OD1 ASN A 105 CA CA A 306 1555 1555 2.61 LINK O ASP A 106 CA CA A 306 1555 1555 2.54 LINK OD1 ASP A 106 CA CA A 306 1555 1555 2.25 LINK CA CA A 306 O3 FUC C 4 1555 1555 2.14 LINK CA CA A 306 O4 FUC C 4 1555 1555 2.58 LINK OE1 GLU B 80 CA CA B 306 1555 1555 3.00 LINK OD1 ASN B 82 CA CA B 306 1555 1555 2.46 LINK OE1 GLU B 88 CA CA B 306 1555 1555 2.51 LINK OD1 ASN B 105 CA CA B 306 1555 1555 2.59 LINK OD1 ASP B 106 CA CA B 306 1555 1555 2.31 LINK O ASP B 106 CA CA B 306 1555 1555 2.57 LINK CA CA B 306 O4 FUC D 4 1555 1555 2.58 LINK CA CA B 306 O3 FUC D 4 1555 1555 2.11 CISPEP 1 GLU A 80 PRO A 81 0 -3.70 CISPEP 2 GLU B 80 PRO B 81 0 -2.98 CRYST1 52.290 58.670 58.870 76.03 86.28 86.31 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019124 -0.001233 -0.000978 0.00000 SCALE2 0.000000 0.017080 -0.004190 0.00000 SCALE3 0.000000 0.000000 0.017527 0.00000 MTRIX1 1 -1.000000 -0.005513 -0.005256 -0.36500 1 MTRIX2 1 0.006443 -0.244200 -0.969700 1.47536 1 MTRIX3 1 0.004063 -0.969700 0.244200 1.22574 1