PDB Short entry for 4CT7 HEADER TRANSCRIPTION 12-MAR-14 4CT7 TITLE CNOT9-CNOT1 COMPLEX WITH BOUND TRYPTOPHAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CNOT1-CN9BD DOMAIN RESIDUES 1352-1594; COMPND 5 SYNONYM: CCR4-ASSOCIATED FACTOR 1, NEGATIVE REGULATOR OF COMPND 6 TRANSCRIPTION SUBUNIT 1 HOMOLOG, NOT1H, HNOT1, CNOT1-CN9BD; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CELL DIFFERENTIATION PROTEIN RCD1 HOMOLOG; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: CNOT9, RESIDUES 16-285; COMPND 12 SYNONYM: RCD-1, CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 9, CNOT9; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET BASED; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEC_HIS_GST; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PET BASED; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PEC_HIS_SUMO KEYWDS TRANSCRIPTION, CNOT1-CN9DB-DOMAIN, TRYPTOPHANE, MES EXPDTA X-RAY DIFFRACTION AUTHOR J.BASQUIN,S.OZGUR,E.CONTI REVDAT 4 20-DEC-23 4CT7 1 REMARK REVDAT 3 25-JUN-14 4CT7 1 JRNL REVDAT 2 18-JUN-14 4CT7 1 JRNL REVDAT 1 07-MAY-14 4CT7 0 JRNL AUTH H.MATHYS,J.BASQUIN,S.OZGUR,M.CZARNOCKI-CIECIURA,F.BONNEAU, JRNL AUTH 2 A.AARTSE,A.DZIEMBOWSKI,M.NOWOTNY,E.CONTI,W.FILIPOWICZ JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS TO THE ROLE OF THE JRNL TITL 2 CCR4-NOT COMPLEX AND DDX6 ATPASE IN MICRORNA REPRESSION. JRNL REF MOL.CELL V. 54 751 2014 JRNL REFN ISSN 1097-2765 JRNL PMID 24768538 JRNL DOI 10.1016/J.MOLCEL.2014.03.036 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.210 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 54804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2870 - 5.8914 1.00 3608 193 0.1495 0.1468 REMARK 3 2 5.8914 - 4.6775 1.00 3589 185 0.1530 0.2080 REMARK 3 3 4.6775 - 4.0865 0.99 3593 189 0.1266 0.1848 REMARK 3 4 4.0865 - 3.7131 0.99 3571 188 0.1452 0.1756 REMARK 3 5 3.7131 - 3.4470 0.99 3574 191 0.1596 0.1927 REMARK 3 6 3.4470 - 3.2438 0.99 3562 186 0.1730 0.2320 REMARK 3 7 3.2438 - 3.0814 0.99 3613 190 0.1818 0.1976 REMARK 3 8 3.0814 - 2.9473 0.99 3609 186 0.1819 0.2311 REMARK 3 9 2.9473 - 2.8338 0.99 3582 190 0.1843 0.2222 REMARK 3 10 2.8338 - 2.7361 1.00 3584 190 0.1822 0.2564 REMARK 3 11 2.7361 - 2.6505 1.00 3641 190 0.1858 0.2317 REMARK 3 12 2.6505 - 2.5748 1.00 3575 188 0.1854 0.2454 REMARK 3 13 2.5748 - 2.5070 1.00 3588 193 0.1878 0.2232 REMARK 3 14 2.5070 - 2.4458 1.00 3598 192 0.1885 0.2131 REMARK 3 15 2.4458 - 2.3902 1.00 3621 191 0.1964 0.2402 REMARK 3 16 2.3902 - 2.3393 1.00 3586 188 0.2008 0.2471 REMARK 3 17 2.3393 - 2.2926 1.00 3638 190 0.2160 0.2585 REMARK 3 18 2.2926 - 2.2493 1.00 3563 186 0.2258 0.3069 REMARK 3 19 2.2493 - 2.2091 1.00 3609 193 0.2316 0.2728 REMARK 3 20 2.2091 - 2.1717 1.00 3610 192 0.2484 0.2750 REMARK 3 21 2.1717 - 2.1366 1.00 3598 190 0.2569 0.2745 REMARK 3 22 2.1366 - 2.1038 1.00 3564 188 0.2648 0.2605 REMARK 3 23 2.1038 - 2.0728 1.00 3645 193 0.2870 0.3342 REMARK 3 24 2.0728 - 2.0436 1.00 3630 195 0.2908 0.3288 REMARK 3 25 2.0436 - 2.0160 1.00 3524 181 0.3045 0.2954 REMARK 3 26 2.0160 - 1.9898 1.00 3696 193 0.3246 0.4131 REMARK 3 27 1.9898 - 1.9650 1.00 3457 181 0.3604 0.3575 REMARK 3 28 1.9650 - 1.9413 1.00 3730 197 0.3796 0.4506 REMARK 3 29 1.9413 - 1.9187 1.00 3518 185 0.4614 0.4546 REMARK 3 30 1.9187 - 1.8972 0.72 2574 136 0.5681 0.6592 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4065 REMARK 3 ANGLE : 1.104 5519 REMARK 3 CHIRALITY : 0.043 646 REMARK 3 PLANARITY : 0.005 705 REMARK 3 DIHEDRAL : 13.964 1533 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1352 THROUGH 1386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9289 2.0966 -0.1013 REMARK 3 T TENSOR REMARK 3 T11: 0.4970 T22: 0.3725 REMARK 3 T33: 0.5350 T12: -0.0197 REMARK 3 T13: -0.1177 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 6.7170 L22: 4.5446 REMARK 3 L33: 4.1324 L12: 1.7491 REMARK 3 L13: -4.1763 L23: -1.2093 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: -0.2568 S13: -0.6086 REMARK 3 S21: 0.0070 S22: 0.0234 S23: 0.4758 REMARK 3 S31: 0.1660 S32: -0.3055 S33: 0.0839 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 1387 THROUGH 1476 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2681 14.6284 0.1653 REMARK 3 T TENSOR REMARK 3 T11: 0.2886 T22: 0.2464 REMARK 3 T33: 0.3265 T12: -0.0258 REMARK 3 T13: -0.0142 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 3.0128 L22: 1.6874 REMARK 3 L33: 1.5935 L12: 0.7004 REMARK 3 L13: 1.8017 L23: 0.1198 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: -0.0553 S13: 0.2799 REMARK 3 S21: -0.1120 S22: -0.0084 S23: 0.3922 REMARK 3 S31: 0.0629 S32: -0.2448 S33: -0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 1477 THROUGH 1588 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9184 12.2940 0.2704 REMARK 3 T TENSOR REMARK 3 T11: 0.3079 T22: 0.2044 REMARK 3 T33: 0.2184 T12: 0.0211 REMARK 3 T13: -0.0037 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 5.9106 L22: 1.4033 REMARK 3 L33: 1.1866 L12: 0.7872 REMARK 3 L13: 0.6864 L23: -0.1762 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: 0.0402 S13: 0.0132 REMARK 3 S21: -0.2124 S22: 0.0095 S23: 0.0598 REMARK 3 S31: 0.1871 S32: 0.0116 S33: -0.0602 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 16 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0570 11.7529 17.1744 REMARK 3 T TENSOR REMARK 3 T11: 0.3057 T22: 0.2573 REMARK 3 T33: 0.2389 T12: 0.0110 REMARK 3 T13: 0.0054 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 4.1358 L22: 2.4656 REMARK 3 L33: 1.9563 L12: 0.3137 REMARK 3 L13: -0.6396 L23: -0.2927 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: -0.3107 S13: -0.2310 REMARK 3 S21: 0.1441 S22: 0.0273 S23: -0.1485 REMARK 3 S31: 0.1581 S32: 0.1319 S33: 0.0290 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 149 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8778 33.3494 31.2484 REMARK 3 T TENSOR REMARK 3 T11: 0.3065 T22: 0.2862 REMARK 3 T33: 0.2887 T12: 0.0254 REMARK 3 T13: 0.0359 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 3.4047 L22: 4.8859 REMARK 3 L33: 6.3653 L12: -0.9614 REMARK 3 L13: -2.0713 L23: 1.2457 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.3113 S13: 0.2236 REMARK 3 S21: 0.1679 S22: 0.0113 S23: 0.0235 REMARK 3 S31: -0.1299 S32: -0.0072 S33: -0.0337 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1290059973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54804 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.897 REMARK 200 RESOLUTION RANGE LOW (A) : 48.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2FV2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3350, 200 MM AMMONIUM REMARK 280 SULFATE, 50 MM MES PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.51550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.49200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.51550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.49200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2183 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1589 REMARK 465 GLN A 1590 REMARK 465 PRO A 1591 REMARK 465 THR A 1592 REMARK 465 GLY A 1593 REMARK 465 PHE A 1594 REMARK 465 GLU B 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A1361 CG OD1 OD2 REMARK 470 GLN A1388 CG CD OE1 NE2 REMARK 470 GLU A1403 CG CD OE1 OE2 REMARK 470 GLU A1434 CG CD OE1 OE2 REMARK 470 LEU A1477 CG CD1 CD2 REMARK 470 ARG A1478 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1490 CG CD OE1 NE2 REMARK 470 GLU A1513 CG CD OE1 OE2 REMARK 470 GLU A1528 CG CD OE1 OE2 REMARK 470 ASP A1587 CG OD1 OD2 REMARK 470 GLN B 16 CG CD OE1 NE2 REMARK 470 VAL B 17 CG1 CG2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 ARG B 107 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 244 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 21 O HOH B 2003 1.76 REMARK 500 N TRP B 25 O HOH B 2003 1.98 REMARK 500 O HOH A 2023 O HOH A 2079 2.10 REMARK 500 O HOH B 2009 O HOH B 2040 2.11 REMARK 500 O HOH B 2167 O HOH B 2168 2.14 REMARK 500 O HOH A 2021 O HOH A 2027 2.16 REMARK 500 O HOH A 2017 O HOH A 2144 2.17 REMARK 500 O ARG B 46 O HOH B 2030 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A1479 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1478 -51.99 -138.73 REMARK 500 THR A1479 132.56 -9.28 REMARK 500 ALA A1480 -146.95 -103.59 REMARK 500 ASP A1587 15.68 -66.21 REMARK 500 LEU B 283 40.88 -75.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2018 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A2206 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A2207 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B2180 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B2194 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B2199 DISTANCE = 6.46 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TRP B 1286 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 1285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP B 1286 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CT4 RELATED DB: PDB REMARK 900 CNOT1 MIF4G DOMAIN - DDX6 COMPLEX REMARK 900 RELATED ID: 4CT5 RELATED DB: PDB REMARK 900 DDX6 REMARK 900 RELATED ID: 4CT6 RELATED DB: PDB REMARK 900 CNOT9-CNOT1 COMPLEX DBREF 4CT7 A 1352 1594 UNP A5YKK6 CNOT1_HUMAN 1352 1594 DBREF 4CT7 B 16 285 UNP Q92600 RCD1_HUMAN 16 285 SEQRES 1 A 243 PRO PRO GLN PRO GLN TYR SER TYR HIS ASP ILE ASN VAL SEQRES 2 A 243 TYR SER LEU ALA GLY LEU ALA PRO HIS ILE THR LEU ASN SEQRES 3 A 243 PRO THR ILE PRO LEU PHE GLN ALA HIS PRO GLN LEU LYS SEQRES 4 A 243 GLN CYS VAL ARG GLN ALA ILE GLU ARG ALA VAL GLN GLU SEQRES 5 A 243 LEU VAL HIS PRO VAL VAL ASP ARG SER ILE LYS ILE ALA SEQRES 6 A 243 MET THR THR CYS GLU GLN ILE VAL ARG LYS ASP PHE ALA SEQRES 7 A 243 LEU ASP SER GLU GLU SER ARG MET ARG ILE ALA ALA HIS SEQRES 8 A 243 HIS MET MET ARG ASN LEU THR ALA GLY MET ALA MET ILE SEQRES 9 A 243 THR CYS ARG GLU PRO LEU LEU MET SER ILE SER THR ASN SEQRES 10 A 243 LEU LYS ASN SER PHE ALA SER ALA LEU ARG THR ALA SER SEQRES 11 A 243 PRO GLN GLN ARG GLU MET MET ASP GLN ALA ALA ALA GLN SEQRES 12 A 243 LEU ALA GLN ASP ASN CYS GLU LEU ALA CYS CYS PHE ILE SEQRES 13 A 243 GLN LYS THR ALA VAL GLU LYS ALA GLY PRO GLU MET ASP SEQRES 14 A 243 LYS ARG LEU ALA THR GLU PHE GLU LEU ARG LYS HIS ALA SEQRES 15 A 243 ARG GLN GLU GLY ARG ARG TYR CYS ASP PRO VAL VAL LEU SEQRES 16 A 243 THR TYR GLN ALA GLU ARG MET PRO GLU GLN ILE ARG LEU SEQRES 17 A 243 LYS VAL GLY GLY VAL ASP PRO LYS GLN LEU ALA VAL TYR SEQRES 18 A 243 GLU GLU PHE ALA ARG ASN VAL PRO GLY PHE LEU PRO THR SEQRES 19 A 243 ASN ASP LEU SER GLN PRO THR GLY PHE SEQRES 1 B 270 GLN VAL ASP ARG GLU LYS ILE TYR GLN TRP ILE ASN GLU SEQRES 2 B 270 LEU SER SER PRO GLU THR ARG GLU ASN ALA LEU LEU GLU SEQRES 3 B 270 LEU SER LYS LYS ARG GLU SER VAL PRO ASP LEU ALA PRO SEQRES 4 B 270 MET LEU TRP HIS SER PHE GLY THR ILE ALA ALA LEU LEU SEQRES 5 B 270 GLN GLU ILE VAL ASN ILE TYR PRO SER ILE ASN PRO PRO SEQRES 6 B 270 THR LEU THR ALA HIS GLN SER ASN ARG VAL CYS ASN ALA SEQRES 7 B 270 LEU ALA LEU LEU GLN CYS VAL ALA SER HIS PRO GLU THR SEQRES 8 B 270 ARG SER ALA PHE LEU ALA ALA HIS ILE PRO LEU PHE LEU SEQRES 9 B 270 TYR PRO PHE LEU HIS THR VAL SER LYS THR ARG PRO PHE SEQRES 10 B 270 GLU TYR LEU ARG LEU THR SER LEU GLY VAL ILE GLY ALA SEQRES 11 B 270 LEU VAL LYS THR ASP GLU GLN GLU VAL ILE ASN PHE LEU SEQRES 12 B 270 LEU THR THR GLU ILE ILE PRO LEU CYS LEU ARG ILE MET SEQRES 13 B 270 GLU SER GLY SER GLU LEU SER LYS THR VAL ALA THR PHE SEQRES 14 B 270 ILE LEU GLN LYS ILE LEU LEU ASP ASP THR GLY LEU ALA SEQRES 15 B 270 TYR ILE CYS GLN THR TYR GLU ARG PHE SER HIS VAL ALA SEQRES 16 B 270 MET ILE LEU GLY LYS MET VAL LEU GLN LEU SER LYS GLU SEQRES 17 B 270 PRO SER ALA ARG LEU LEU LYS HIS VAL VAL ARG CYS TYR SEQRES 18 B 270 LEU ARG LEU SER ASP ASN PRO ARG ALA ARG GLU ALA LEU SEQRES 19 B 270 ARG GLN CYS LEU PRO ASP GLN LEU LYS ASP THR THR PHE SEQRES 20 B 270 ALA GLN VAL LEU LYS ASP ASP THR THR THR LYS ARG TRP SEQRES 21 B 270 LEU ALA GLN LEU VAL LYS ASN LEU GLN GLU HET TRP B1286 14 HET MES B1285 12 HETNAM TRP TRYPTOPHAN HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 TRP C11 H12 N2 O2 FORMUL 4 MES C6 H13 N O4 S FORMUL 5 HOH *415(H2 O) HELIX 1 1 SER A 1366 ILE A 1374 5 9 HELIX 2 2 ILE A 1380 HIS A 1386 1 7 HELIX 3 3 PRO A 1387 GLN A 1391 5 5 HELIX 4 4 CYS A 1392 PHE A 1428 1 37 HELIX 5 5 GLU A 1434 LEU A 1477 1 44 HELIX 6 6 GLN A 1484 GLU A 1536 1 53 HELIX 7 7 ASP A 1542 MET A 1553 1 12 HELIX 8 8 ASP A 1565 GLN A 1568 5 4 HELIX 9 9 LEU A 1569 ASN A 1578 1 10 HELIX 10 10 GLN B 16 LEU B 29 1 14 HELIX 11 11 SER B 31 LYS B 45 1 15 HELIX 12 12 ASP B 51 SER B 59 1 9 HELIX 13 13 GLY B 61 ASN B 72 1 12 HELIX 14 14 ILE B 73 ILE B 77 5 5 HELIX 15 15 THR B 83 HIS B 103 1 21 HELIX 16 16 THR B 106 ALA B 113 1 8 HELIX 17 17 HIS B 114 PHE B 118 5 5 HELIX 18 18 LEU B 119 HIS B 124 1 6 HELIX 19 19 THR B 129 THR B 149 1 21 HELIX 20 20 GLU B 151 THR B 160 1 10 HELIX 21 21 ILE B 163 GLY B 174 1 12 HELIX 22 22 SER B 175 ASP B 192 1 18 HELIX 23 23 ASP B 192 CYS B 200 1 9 HELIX 24 24 THR B 202 GLU B 223 1 22 HELIX 25 25 SER B 225 SER B 240 1 16 HELIX 26 26 ASN B 242 LEU B 253 1 12 HELIX 27 27 PRO B 254 LYS B 258 5 5 HELIX 28 28 PHE B 262 LYS B 267 1 6 HELIX 29 29 ASP B 269 LEU B 283 1 15 CISPEP 1 LEU A 1477 ARG A 1478 0 1.79 CISPEP 2 ARG A 1478 THR A 1479 0 12.06 CISPEP 3 ASN B 78 PRO B 79 0 -4.26 SITE 1 AC1 3 ILE B 164 ARG B 205 HIS B 208 SITE 1 AC2 5 CYS B 200 GLN B 201 THR B 202 TYR B 203 SITE 2 AC2 5 PHE B 206 CRYST1 155.031 66.984 72.653 90.00 99.85 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006450 0.000000 0.001120 0.00000 SCALE2 0.000000 0.014929 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013970 0.00000