PDB Short entry for 4CXX HEADER OXIDOREDUCTASE 09-APR-14 4CXX TITLE CRYSTAL STRUCTURE OF HUMAN FTO IN COMPLEX WITH ACYLHYDRAZINE INHIBITOR TITLE 2 16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE FTO; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEMETHYLASE, RESIDUES 32-505; COMPND 5 SYNONYM: FAT MASS AND OBESITY-ASSOCIATED PROTEIN; COMPND 6 EC: 1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS OXIDOREDUCTASE, SMALL MOLECULAR PROBE EXPDTA X-RAY DIFFRACTION AUTHOR D.W.TOH,L.SUN,J.TAN,Y.CHEN,L.Z.M.LAU,W.HONG,E.C.Y.WOON,Y.G.GAO REVDAT 7 20-DEC-23 4CXX 1 REMARK REVDAT 6 08-MAY-19 4CXX 1 REMARK LINK REVDAT 5 06-MAR-19 4CXX 1 REMARK LINK REVDAT 4 18-APR-18 4CXX 1 JRNL REVDAT 3 21-JAN-15 4CXX 1 JRNL REVDAT 2 08-OCT-14 4CXX 1 HETNAM FORMUL REVDAT 1 01-OCT-14 4CXX 0 JRNL AUTH J.D.W.TOH,L.SUN,L.Z.M.LAU,J.TAN,J.J.A.LOW,C.W.Q.TANG, JRNL AUTH 2 E.J.Y.CHEONG,M.J.H.TAN,Y.CHEN,W.HONG,Y.G.GAO,E.C.Y.WOON JRNL TITL A STRATEGY BASED ON NUCLEOTIDE SPECIFICITY LEADS TO A JRNL TITL 2 SUBFAMILY-SELECTIVE AND CELL-ACTIVE INHIBITOR JRNL TITL 3 OFN6-METHYLADENOSINE DEMETHYLASE FTO. JRNL REF CHEM SCI V. 6 112 2015 JRNL REFN ISSN 2041-6520 JRNL PMID 28553460 JRNL DOI 10.1039/C4SC02554G REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.830 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 14949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1885 - 5.9439 0.99 2979 158 0.1604 0.1962 REMARK 3 2 5.9439 - 4.7191 0.96 2880 152 0.1977 0.2409 REMARK 3 3 4.7191 - 4.1229 0.95 2849 147 0.1806 0.2495 REMARK 3 4 4.1229 - 3.7461 0.96 2910 154 0.2099 0.2651 REMARK 3 5 3.7461 - 3.4776 0.95 2855 146 0.2339 0.2945 REMARK 3 6 3.4776 - 3.2727 0.95 2857 152 0.2599 0.3048 REMARK 3 7 3.2727 - 3.1088 0.96 2918 153 0.2902 0.3641 REMARK 3 8 3.1088 - 2.9735 0.95 2806 149 0.3215 0.4099 REMARK 3 9 2.9735 - 2.8590 0.92 2786 147 0.3643 0.4335 REMARK 3 10 2.8590 - 2.7604 0.50 1509 80 0.4640 0.6085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 90.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3522 REMARK 3 ANGLE : 1.315 4794 REMARK 3 CHIRALITY : 0.047 522 REMARK 3 PLANARITY : 0.006 625 REMARK 3 DIHEDRAL : 17.028 1263 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4CXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-14. REMARK 100 THE DEPOSITION ID IS D_1290060268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.710 REMARK 200 RESOLUTION RANGE LOW (A) : 49.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.910 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.040 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.89 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4IE5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE, PH 5.6, 10% PEG REMARK 280 3350, 10% T-BUTANOL, 1MM NISO4, 1.5 MM LIGAND, 293 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.35850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.62150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.76867 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 70.35850 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.62150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.76867 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 70.35850 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.62150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.76867 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.24300 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 55.53733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 81.24300 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 55.53733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 81.24300 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 55.53733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 SER A 123 REMARK 465 ASN A 124 REMARK 465 ILE A 125 REMARK 465 LYS A 126 REMARK 465 HIS A 127 REMARK 465 THR A 128 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 VAL A 168 REMARK 465 PRO A 169 REMARK 465 LEU A 170 REMARK 465 CYS A 171 REMARK 465 MET A 172 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 ASP A 175 REMARK 465 PHE A 176 REMARK 465 PRO A 177 REMARK 465 ARG A 178 REMARK 465 VAL A 179 REMARK 465 GLY A 180 REMARK 465 MET A 181 REMARK 465 GLY A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 TYR A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 GLN A 188 REMARK 465 GLY A 251 REMARK 465 PRO A 252 REMARK 465 GLU A 253 REMARK 465 GLU A 254 REMARK 465 GLU A 255 REMARK 465 SER A 256 REMARK 465 GLU A 257 REMARK 465 ASP A 258 REMARK 465 ASP A 259 REMARK 465 SER A 260 REMARK 465 HIS A 261 REMARK 465 GLY A 386 REMARK 465 ASN A 387 REMARK 465 GLN A 468 REMARK 465 LYS A 504 REMARK 465 PRO A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 162 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 75 OE1 GLU A 129 1.45 REMARK 500 O LEU A 464 CE LYS A 469 1.51 REMARK 500 O HOH A 2092 O HOH A 2093 2.01 REMARK 500 CD GLN A 210 O HOH A 2041 2.06 REMARK 500 OE1 GLN A 210 O HOH A 2041 2.07 REMARK 500 O ILE A 492 CD2 LEU A 496 2.08 REMARK 500 OAG 640 A 1505 O HOH A 2040 2.10 REMARK 500 O LYS A 194 O HOH A 2028 2.15 REMARK 500 NH2 ARG A 96 OAF 640 A 1505 2.16 REMARK 500 CD2 HIS A 75 OE1 GLU A 129 2.16 REMARK 500 CD2 LEU A 496 O HOH A 2109 2.17 REMARK 500 O LEU A 464 CD LYS A 469 2.18 REMARK 500 O GLU A 67 OG1 THR A 71 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 36 NZ LYS A 216 6555 1.85 REMARK 500 CG ASP A 36 NZ LYS A 216 6555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 45 CB - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 PRO A 470 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 PRO A 484 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 45 -66.89 -135.08 REMARK 500 TYR A 46 57.91 -102.91 REMARK 500 GLU A 53 150.15 -42.69 REMARK 500 ALA A 54 -9.72 -49.43 REMARK 500 GLN A 86 -129.07 58.58 REMARK 500 ASN A 101 125.30 -32.83 REMARK 500 VAL A 120 -158.72 -91.30 REMARK 500 ASN A 164 -55.48 -120.19 REMARK 500 PRO A 213 38.80 -92.65 REMARK 500 TRP A 230 132.77 -39.23 REMARK 500 ASP A 299 -125.66 57.69 REMARK 500 TRP A 378 -53.98 -127.05 REMARK 500 GLN A 385 -161.73 -119.79 REMARK 500 ARG A 388 -62.51 -140.47 REMARK 500 TYR A 389 6.28 54.89 REMARK 500 LYS A 391 -71.43 -140.59 REMARK 500 LEU A 435 -72.13 -67.56 REMARK 500 THR A 436 -34.22 -33.58 REMARK 500 ARG A 459 -1.26 -55.85 REMARK 500 PRO A 465 -166.38 -69.16 REMARK 500 CYS A 472 79.66 -105.30 REMARK 500 LYS A 478 -29.03 -37.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2111 DISTANCE = 8.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1504 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 231 NE2 REMARK 620 2 ASP A 233 OD1 84.1 REMARK 620 3 HIS A 307 NE2 80.2 82.1 REMARK 620 4 640 A1505 OAE 108.9 166.1 104.5 REMARK 620 5 640 A1505 NAS 121.1 114.4 152.9 55.0 REMARK 620 6 640 A1505 NAT 100.4 93.7 175.8 79.3 29.2 REMARK 620 7 HOH A2046 O 156.0 73.6 104.8 92.7 63.2 72.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 640 A 1505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4CXW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN FTO IN COMPLEX WITH SUBFAMILY-SELECTIVE REMARK 900 INHIBITOR 12 REMARK 900 RELATED ID: 4CXY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN FTO IN COMPLEX WITH ACYLHYDRAZINE REMARK 900 INHIBITOR 21 REMARK 900 RELATED ID: 4CXZ RELATED DB: PDB REMARK 900 OXIDOREDUCTASE COMPLEX 4 REMARK 900 RELATED ID: 4CY0 RELATED DB: PDB REMARK 900 OXIDOREDUCTASE COMPLEX 5 DBREF 4CXX A 32 505 UNP Q9C0B1 FTO_HUMAN 32 505 SEQADV 4CXX MET A 11 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX GLY A 12 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX SER A 13 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX SER A 14 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX HIS A 15 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX HIS A 16 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX HIS A 17 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX HIS A 18 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX HIS A 19 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX HIS A 20 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX SER A 21 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX SER A 22 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX GLY A 23 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX LEU A 24 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX VAL A 25 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX PRO A 26 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX ARG A 27 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX GLY A 28 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX SER A 29 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX HIS A 30 UNP Q9C0B1 EXPRESSION TAG SEQADV 4CXX MET A 31 UNP Q9C0B1 EXPRESSION TAG SEQRES 1 A 495 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 495 LEU VAL PRO ARG GLY SER HIS MET THR PRO LYS ASP ASP SEQRES 3 A 495 GLU PHE TYR GLN GLN TRP GLN LEU LYS TYR PRO LYS LEU SEQRES 4 A 495 ILE LEU ARG GLU ALA SER SER VAL SER GLU GLU LEU HIS SEQRES 5 A 495 LYS GLU VAL GLN GLU ALA PHE LEU THR LEU HIS LYS HIS SEQRES 6 A 495 GLY CYS LEU PHE ARG ASP LEU VAL ARG ILE GLN GLY LYS SEQRES 7 A 495 ASP LEU LEU THR PRO VAL SER ARG ILE LEU ILE GLY ASN SEQRES 8 A 495 PRO GLY CYS THR TYR LYS TYR LEU ASN THR ARG LEU PHE SEQRES 9 A 495 THR VAL PRO TRP PRO VAL LYS GLY SER ASN ILE LYS HIS SEQRES 10 A 495 THR GLU ALA GLU ILE ALA ALA ALA CYS GLU THR PHE LEU SEQRES 11 A 495 LYS LEU ASN ASP TYR LEU GLN ILE GLU THR ILE GLN ALA SEQRES 12 A 495 LEU GLU GLU LEU ALA ALA LYS GLU LYS ALA ASN GLU ASP SEQRES 13 A 495 ALA VAL PRO LEU CYS MET SER ALA ASP PHE PRO ARG VAL SEQRES 14 A 495 GLY MET GLY SER SER TYR ASN GLY GLN ASP GLU VAL ASP SEQRES 15 A 495 ILE LYS SER ARG ALA ALA TYR ASN VAL THR LEU LEU ASN SEQRES 16 A 495 PHE MET ASP PRO GLN LYS MET PRO TYR LEU LYS GLU GLU SEQRES 17 A 495 PRO TYR PHE GLY MET GLY LYS MET ALA VAL SER TRP HIS SEQRES 18 A 495 HIS ASP GLU ASN LEU VAL ASP ARG SER ALA VAL ALA VAL SEQRES 19 A 495 TYR SER TYR SER CYS GLU GLY PRO GLU GLU GLU SER GLU SEQRES 20 A 495 ASP ASP SER HIS LEU GLU GLY ARG ASP PRO ASP ILE TRP SEQRES 21 A 495 HIS VAL GLY PHE LYS ILE SER TRP ASP ILE GLU THR PRO SEQRES 22 A 495 GLY LEU ALA ILE PRO LEU HIS GLN GLY ASP CYS TYR PHE SEQRES 23 A 495 MET LEU ASP ASP LEU ASN ALA THR HIS GLN HIS CYS VAL SEQRES 24 A 495 LEU ALA GLY SER GLN PRO ARG PHE SER SER THR HIS ARG SEQRES 25 A 495 VAL ALA GLU CYS SER THR GLY THR LEU ASP TYR ILE LEU SEQRES 26 A 495 GLN ARG CYS GLN LEU ALA LEU GLN ASN VAL CYS ASP ASP SEQRES 27 A 495 VAL ASP ASN ASP ASP VAL SER LEU LYS SER PHE GLU PRO SEQRES 28 A 495 ALA VAL LEU LYS GLN GLY GLU GLU ILE HIS ASN GLU VAL SEQRES 29 A 495 GLU PHE GLU TRP LEU ARG GLN PHE TRP PHE GLN GLY ASN SEQRES 30 A 495 ARG TYR ARG LYS CYS THR ASP TRP TRP CYS GLN PRO MET SEQRES 31 A 495 ALA GLN LEU GLU ALA LEU TRP LYS LYS MET GLU GLY VAL SEQRES 32 A 495 THR ASN ALA VAL LEU HIS GLU VAL LYS ARG GLU GLY LEU SEQRES 33 A 495 PRO VAL GLU GLN ARG ASN GLU ILE LEU THR ALA ILE LEU SEQRES 34 A 495 ALA SER LEU THR ALA ARG GLN ASN LEU ARG ARG GLU TRP SEQRES 35 A 495 HIS ALA ARG CYS GLN SER ARG ILE ALA ARG THR LEU PRO SEQRES 36 A 495 ALA ASP GLN LYS PRO GLU CYS ARG PRO TYR TRP GLU LYS SEQRES 37 A 495 ASP ASP ALA SER MET PRO LEU PRO PHE ASP LEU THR ASP SEQRES 38 A 495 ILE VAL SER GLU LEU ARG GLY GLN LEU LEU GLU ALA LYS SEQRES 39 A 495 PRO HET NI A1504 1 HET 640 A1505 28 HETNAM NI NICKEL (II) ION HETNAM 640 (2E)-4-{N'-[4-(4-TERT-BUTYL-BENZYL)-PYRIDINE-3- HETNAM 2 640 CARBONYL]-HYDRAZINO}-4-OXO-BUT-2-ENOIC ACID FORMUL 2 NI NI 2+ FORMUL 3 640 C21 H23 N3 O4 FORMUL 4 HOH *113(H2 O) HELIX 1 1 ASP A 36 LEU A 44 1 9 HELIX 2 2 GLU A 53 VAL A 57 5 5 HELIX 3 3 SER A 58 HIS A 75 1 18 HELIX 4 4 GLU A 129 GLU A 161 1 33 HELIX 5 5 VAL A 191 ARG A 196 1 6 HELIX 6 6 ASP A 300 THR A 304 1 5 HELIX 7 7 THR A 330 LEU A 342 1 13 HELIX 8 8 GLU A 360 TRP A 378 1 19 HELIX 9 9 TRP A 378 TRP A 383 1 6 HELIX 10 10 TRP A 396 ARG A 423 1 28 HELIX 11 11 PRO A 427 GLN A 457 1 31 HELIX 12 12 ARG A 459 LEU A 464 1 6 HELIX 13 13 LEU A 489 GLU A 502 1 14 SHEET 1 AA 6 HIS A 30 MET A 31 0 SHEET 2 AA 6 GLY A 284 LEU A 289 1 O GLY A 284 N MET A 31 SHEET 3 AA 6 TRP A 270 ILE A 276 -1 O TRP A 270 N LEU A 289 SHEET 4 AA 6 HIS A 305 LEU A 310 -1 O GLN A 306 N LYS A 275 SHEET 5 AA 6 LYS A 225 HIS A 231 -1 N ALA A 227 O VAL A 309 SHEET 6 AA 6 LYS A 216 GLU A 217 -1 O LYS A 216 N MET A 226 SHEET 1 AB 7 LEU A 49 ARG A 52 0 SHEET 2 AB 7 ASP A 293 MET A 297 -1 O CYS A 294 N ARG A 52 SHEET 3 AB 7 VAL A 242 SER A 248 -1 O VAL A 242 N MET A 297 SHEET 4 AB 7 ARG A 316 ARG A 322 -1 O PHE A 317 N TYR A 247 SHEET 5 AB 7 VAL A 201 MET A 207 -1 O VAL A 201 N ARG A 322 SHEET 6 AB 7 SER A 95 GLY A 100 -1 O SER A 95 N PHE A 206 SHEET 7 AB 7 VAL A 116 PRO A 117 1 O VAL A 116 N GLY A 100 SHEET 1 AC 2 LEU A 82 ILE A 85 0 SHEET 2 AC 2 LYS A 88 LEU A 91 -1 O LYS A 88 N ILE A 85 SHEET 1 AD 2 THR A 105 TYR A 108 0 SHEET 2 AD 2 THR A 111 PHE A 114 -1 O THR A 111 N TYR A 108 LINK NE2 HIS A 231 NI NI A1504 1555 1555 2.16 LINK OD1 ASP A 233 NI NI A1504 1555 1555 2.34 LINK NE2 HIS A 307 NI NI A1504 1555 1555 2.36 LINK NI NI A1504 OAE 640 A1505 1555 1555 2.07 LINK NI NI A1504 NAS 640 A1505 1555 1555 2.79 LINK NI NI A1504 NAT 640 A1505 1555 1555 2.20 LINK NI NI A1504 O HOH A2046 1555 1555 2.23 CISPEP 1 ARG A 473 PRO A 474 0 10.98 SITE 1 AC1 5 HIS A 231 ASP A 233 HIS A 307 640 A1505 SITE 2 AC1 5 HOH A2046 SITE 1 AC2 20 ARG A 96 TYR A 106 LEU A 109 HIS A 231 SITE 2 AC2 20 HIS A 232 ASP A 233 GLU A 234 VAL A 244 SITE 3 AC2 20 TYR A 295 HIS A 307 VAL A 309 ARG A 316 SITE 4 AC2 20 SER A 318 THR A 320 ARG A 322 NI A1504 SITE 5 AC2 20 HOH A2016 HOH A2017 HOH A2040 HOH A2046 CRYST1 140.717 140.717 83.306 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007106 0.004103 0.000000 0.00000 SCALE2 0.000000 0.008206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012004 0.00000