PDB Short entry for 4D1E HEADER CONTRACTILE PROTEIN 01-MAY-14 4D1E TITLE THE CRYSTAL STRUCTURE OF HUMAN MUSCLE ALPHA-ACTININ-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-ACTININ-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 19-894; COMPND 5 SYNONYM: ALPHA-ACTININ SKELETAL MUSCLE ISOFORM 2, F-ACTIN CROSS- COMPND 6 LINKING PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: DELTA 1-18 LYSINE METHYLATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: MUSCLE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PETM11 KEYWDS CONTRACTILE PROTEIN, Z-DISC, CALMODULIN-LIKE DOMAIN, SPECTRIN DOMAIN, KEYWDS 2 ACTIN BINDING DOMAIN, ABD EXPDTA X-RAY DIFFRACTION AUTHOR N.PINOTSIS,A.SALMAZO,B.SJOEBLOM,E.GKOUGKOULIA,K.DJINOVIC-CARUGO REVDAT 3 20-DEC-23 4D1E 1 LINK REVDAT 2 17-DEC-14 4D1E 1 JRNL REVDAT 1 10-DEC-14 4D1E 0 JRNL AUTH E.A.RIBEIRO JR,N.PINOTSIS,A.GHISLENI,A.SALMAZO,P.V.KONAREV, JRNL AUTH 2 J.KOSTAN,B.SJOEBLOM,C.SCHREINER,A.A.POLYANSKY,E.GKOUGKOULIA, JRNL AUTH 3 M.R.HOLT,F.L.AACHMANN,B.ZAGROVIC,E.BORDIGNON,K.F.PIRKER, JRNL AUTH 4 D.I.SVERGUN,M.GAUTEL,K.DJINOVIC-CARUGO JRNL TITL THE STRUCTURE AND REGULATION OF HUMAN MUSCLE ALPHA-ACTININ JRNL REF CELL(CAMBRIDGE,MASS.) V. 159 1447 2014 JRNL REFN ISSN 0092-8674 JRNL PMID 25433700 JRNL DOI 10.1016/J.CELL.2014.10.056 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.3120 - 6.6911 1.00 2609 121 0.1791 0.2242 REMARK 3 2 6.6911 - 5.3127 1.00 2484 126 0.2543 0.2717 REMARK 3 3 5.3127 - 4.6417 0.99 2413 136 0.1685 0.2389 REMARK 3 4 4.6417 - 4.2175 1.00 2426 132 0.1788 0.2048 REMARK 3 5 4.2175 - 3.9153 1.00 2403 130 0.2129 0.2994 REMARK 3 6 3.9153 - 3.6845 1.00 2372 147 0.2542 0.3256 REMARK 3 7 3.6845 - 3.5001 1.00 2376 128 0.2827 0.3816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 97.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6996 REMARK 3 ANGLE : 1.592 9451 REMARK 3 CHIRALITY : 0.118 1039 REMARK 3 PLANARITY : 0.007 1241 REMARK 3 DIHEDRAL : 22.125 2654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND ((RESSEQ 34:282)) REMARK 3 ORIGIN FOR THE GROUP (A): -23.8573 236.3021-171.5292 REMARK 3 T TENSOR REMARK 3 T11: 0.5691 T22: 0.6611 REMARK 3 T33: 0.6743 T12: -0.0957 REMARK 3 T13: 0.0172 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 7.4602 L22: 2.7172 REMARK 3 L33: 0.9051 L12: 2.4825 REMARK 3 L13: 0.8819 L23: 1.2288 REMARK 3 S TENSOR REMARK 3 S11: 0.0727 S12: -0.7696 S13: 0.8205 REMARK 3 S21: 0.3160 S22: -0.1924 S23: 0.3505 REMARK 3 S31: 0.1699 S32: -0.0938 S33: 0.1021 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND ((RESSEQ 283:396)) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3838 178.7968-140.3602 REMARK 3 T TENSOR REMARK 3 T11: 1.5702 T22: 1.4354 REMARK 3 T33: 1.2081 T12: 0.1518 REMARK 3 T13: 0.1628 T23: 0.5776 REMARK 3 L TENSOR REMARK 3 L11: 0.9446 L22: 4.3857 REMARK 3 L33: 1.6445 L12: -0.6701 REMARK 3 L13: 0.2163 L23: -1.3498 REMARK 3 S TENSOR REMARK 3 S11: -0.1497 S12: 0.4711 S13: -0.0090 REMARK 3 S21: -0.2966 S22: 0.2612 S23: 0.4851 REMARK 3 S31: -0.2814 S32: -0.0512 S33: -0.0198 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND ((RESSEQ 397:509)) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1454 126.2053-112.8261 REMARK 3 T TENSOR REMARK 3 T11: 1.4977 T22: 0.8190 REMARK 3 T33: 0.7659 T12: 0.1049 REMARK 3 T13: 0.2907 T23: 0.2487 REMARK 3 L TENSOR REMARK 3 L11: 1.8646 L22: 6.1976 REMARK 3 L33: 1.2883 L12: -0.4451 REMARK 3 L13: -0.5683 L23: -2.3197 REMARK 3 S TENSOR REMARK 3 S11: 0.2570 S12: 0.4038 S13: 0.6000 REMARK 3 S21: -2.2673 S22: -0.2843 S23: -0.4965 REMARK 3 S31: 0.2043 S32: 0.0146 S33: -0.0047 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND ((RESSEQ 510:634)) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2846 70.0292 -90.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.3887 T22: 0.5122 REMARK 3 T33: 0.5122 T12: 0.0160 REMARK 3 T13: -0.0567 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 0.4436 L22: 9.2858 REMARK 3 L33: 1.9878 L12: -0.0528 REMARK 3 L13: 0.0076 L23: -2.3239 REMARK 3 S TENSOR REMARK 3 S11: -0.0595 S12: -0.2564 S13: 0.0959 REMARK 3 S21: 0.0328 S22: -0.1034 S23: -0.6299 REMARK 3 S31: -0.0931 S32: -0.0643 S33: 0.1400 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND ((RESSEQ 635:747)) REMARK 3 ORIGIN FOR THE GROUP (A): -24.0062 16.8060 -58.0747 REMARK 3 T TENSOR REMARK 3 T11: 1.0232 T22: 0.8651 REMARK 3 T33: 0.9727 T12: -0.1416 REMARK 3 T13: -0.0943 T23: 0.2913 REMARK 3 L TENSOR REMARK 3 L11: 3.5781 L22: 4.9937 REMARK 3 L33: 6.3306 L12: 0.5756 REMARK 3 L13: -0.2603 L23: -3.2784 REMARK 3 S TENSOR REMARK 3 S11: -0.0597 S12: -1.0885 S13: -1.3145 REMARK 3 S21: -0.1491 S22: 0.1350 S23: -0.1284 REMARK 3 S31: 1.3134 S32: -0.8199 S33: -0.1558 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND ((RESSEQ 748:827)) REMARK 3 ORIGIN FOR THE GROUP (A): -38.8721 3.4737 -33.9135 REMARK 3 T TENSOR REMARK 3 T11: 1.7591 T22: 2.5568 REMARK 3 T33: 1.9307 T12: -0.2468 REMARK 3 T13: 0.0995 T23: 0.3614 REMARK 3 L TENSOR REMARK 3 L11: 1.9902 L22: 3.9522 REMARK 3 L33: 3.5690 L12: -0.6871 REMARK 3 L13: -1.1785 L23: 0.2639 REMARK 3 S TENSOR REMARK 3 S11: 1.0402 S12: -0.6920 S13: -0.3698 REMARK 3 S21: -0.4871 S22: -0.4318 S23: -0.5469 REMARK 3 S31: -0.0462 S32: -1.0917 S33: -0.3619 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND ((RESSEQ 828:892)) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9889 -7.1325 -12.3103 REMARK 3 T TENSOR REMARK 3 T11: 2.2425 T22: 1.4965 REMARK 3 T33: 1.5554 T12: -0.0646 REMARK 3 T13: -0.3476 T23: 0.4117 REMARK 3 L TENSOR REMARK 3 L11: 0.2669 L22: 2.4714 REMARK 3 L33: 0.9930 L12: -0.0428 REMARK 3 L13: -0.4382 L23: -0.6248 REMARK 3 S TENSOR REMARK 3 S11: -0.5565 S12: -0.8109 S13: -0.2310 REMARK 3 S21: 1.3993 S22: 0.4671 S23: -0.3198 REMARK 3 S31: -1.1093 S32: 0.0397 S33: 0.1281 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290060544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.872600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18047 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 51.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 1.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1WKU, 1HCI ,1H8B REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MG FORMATE 5% PEG SMEAR, 0.01 M REMARK 280 EDTA REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.30650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.48850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.30650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.48850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 94480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 205.22600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -182.97700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 19 REMARK 465 MET A 20 REMARK 465 ILE A 21 REMARK 465 GLN A 22 REMARK 465 GLU A 23 REMARK 465 GLU A 24 REMARK 465 GLU A 25 REMARK 465 TRP A 26 REMARK 465 ASP A 27 REMARK 465 ARG A 28 REMARK 465 ASP A 29 REMARK 465 LEU A 30 REMARK 465 LEU A 31 REMARK 465 LEU A 32 REMARK 465 ASP A 33 REMARK 465 ASP A 893 REMARK 465 LEU A 894 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 113 CE NZ REMARK 470 GLN A 484 CG CD OE1 NE2 REMARK 470 GLN A 579 CG CD OE1 NE2 REMARK 470 GLU A 606 CG CD OE1 OE2 REMARK 470 LYS A 748 CG CD CE NZ REMARK 470 MET A 755 CG SD CE REMARK 470 GLU A 757 CG CD OE1 OE2 REMARK 470 ARG A 759 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 763 CG OD1 ND2 REMARK 470 ASP A 766 CG OD1 OD2 REMARK 470 ARG A 768 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 LEU A 772 CG CD1 CD2 REMARK 470 HIS A 775 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 778 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 779 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 781 SG REMARK 470 TYR A 787 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 788 CG OD1 OD2 REMARK 470 LEU A 789 CG CD1 CD2 REMARK 470 GLU A 791 CG CD OE1 OE2 REMARK 470 GLU A 793 CG CD OE1 OE2 REMARK 470 PHE A 794 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 797 CG1 CG2 CD1 REMARK 470 MET A 798 CG SD CE REMARK 470 LEU A 800 CG CD1 CD2 REMARK 470 VAL A 801 CG1 CG2 REMARK 470 ASP A 802 CG OD1 OD2 REMARK 470 ASN A 804 CG OD1 ND2 REMARK 470 GLN A 806 CG CD OE1 NE2 REMARK 470 MET A 818 CG SD CE REMARK 470 TYR A 869 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 891 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 285 NH1 ARG A 288 2.10 REMARK 500 OE2 GLU A 628 NH2 ARG A 631 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 169 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 PRO A 598 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 35 -69.48 -126.43 REMARK 500 LYS A 110 -76.22 -58.23 REMARK 500 ALA A 142 -62.23 -97.81 REMARK 500 GLU A 150 -15.37 77.51 REMARK 500 ALA A 153 -138.23 51.74 REMARK 500 GLN A 174 -63.85 -130.90 REMARK 500 HIS A 177 -74.95 -119.23 REMARK 500 HIS A 222 -69.83 -132.28 REMARK 500 LYS A 227 -0.24 83.27 REMARK 500 ALA A 257 -76.97 -79.94 REMARK 500 GLU A 295 -76.84 -104.44 REMARK 500 ASN A 356 -5.42 66.01 REMARK 500 ALA A 359 -66.62 -122.68 REMARK 500 SER A 595 -7.35 66.75 REMARK 500 ALA A 670 2.09 84.21 REMARK 500 GLU A 718 -59.65 -130.06 REMARK 500 GLN A 752 -66.06 -127.11 REMARK 500 ASP A 766 -71.41 -110.29 REMARK 500 GLU A 776 -71.05 -58.14 REMARK 500 VAL A 801 -8.08 74.32 REMARK 500 ASN A 804 -0.79 68.38 REMARK 500 GLN A 806 -2.70 79.75 REMARK 500 TYR A 869 -1.03 80.25 REMARK 500 SER A 874 -179.98 -68.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 111 VAL A 112 -139.37 REMARK 500 LEU A 131 GLY A 132 119.26 REMARK 500 LEU A 223 ASP A 224 -142.02 REMARK 500 PRO A 309 ALA A 310 134.61 REMARK 500 THR A 312 MET A 313 -136.87 REMARK 500 ALA A 705 LEU A 706 -126.93 REMARK 500 TYR A 787 ASP A 788 -132.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 4D1E A 19 894 UNP P35609 ACTN2_HUMAN 19 894 SEQADV 4D1E ALA A 310 UNP P35609 GLU 310 ENGINEERED MUTATION SEQADV 4D1E ALA A 311 UNP P35609 LYS 311 ENGINEERED MUTATION SEQRES 1 A 876 TYR MET ILE GLN GLU GLU GLU TRP ASP ARG ASP LEU LEU SEQRES 2 A 876 LEU ASP PRO ALA TRP GLU LYS GLN GLN ARG MLZ THR PHE SEQRES 3 A 876 THR ALA TRP CYS ASN SER HIS LEU ARG LYS ALA GLY THR SEQRES 4 A 876 GLN ILE GLU ASN ILE GLU GLU ASP PHE ARG ASN GLY LEU SEQRES 5 A 876 MLZ LEU MET LEU LEU LEU GLU VAL ILE SER GLY GLU ARG SEQRES 6 A 876 LEU PRO LYS PRO ASP ARG GLY LYS MET ARG PHE HIS MLZ SEQRES 7 A 876 ILE ALA ASN VAL ASN MLZ ALA LEU ASP TYR ILE ALA SER SEQRES 8 A 876 LYS GLY VAL LYS LEU VAL SER ILE GLY ALA GLU GLU ILE SEQRES 9 A 876 VAL ASP GLY ASN VAL LYS MET THR LEU GLY MET ILE TRP SEQRES 10 A 876 THR ILE ILE LEU ARG PHE ALA ILE GLN ASP ILE SER VAL SEQRES 11 A 876 GLU GLU THR SER ALA LYS GLU GLY LEU LEU LEU TRP CYS SEQRES 12 A 876 GLN ARG MLZ THR ALA PRO TYR ARG ASN VAL ASN ILE GLN SEQRES 13 A 876 ASN PHE HIS THR SER TRP MLZ ASP GLY LEU GLY LEU CYS SEQRES 14 A 876 ALA LEU ILE HIS ARG HIS ARG PRO ASP LEU ILE ASP TYR SEQRES 15 A 876 SER LYS LEU ASN LYS ASP ASP PRO ILE GLY ASN ILE ASN SEQRES 16 A 876 LEU ALA MET GLU ILE ALA GLU LYS HIS LEU ASP ILE PRO SEQRES 17 A 876 LYS MET LEU ASP ALA GLU ASP ILE VAL ASN THR PRO MLZ SEQRES 18 A 876 PRO ASP GLU ARG ALA ILE MET THR TYR VAL SER CYS PHE SEQRES 19 A 876 TYR HIS ALA PHE ALA GLY ALA GLU GLN ALA GLU THR ALA SEQRES 20 A 876 ALA ASN ARG ILE CYS LYS VAL LEU ALA VAL ASN GLN GLU SEQRES 21 A 876 ASN GLU ARG LEU MET GLU GLU TYR GLU ARG LEU ALA SER SEQRES 22 A 876 GLU LEU LEU GLU TRP ILE ARG ARG THR ILE PRO TRP LEU SEQRES 23 A 876 GLU ASN ARG THR PRO ALA ALA THR MET GLN ALA MET GLN SEQRES 24 A 876 LYS MLZ LEU GLU ASP PHE ARG ASP TYR ARG ARG MLZ HIS SEQRES 25 A 876 MLZ PRO PRO LYS VAL GLN GLU LYS CYS GLN LEU GLU ILE SEQRES 26 A 876 ASN PHE ASN THR LEU GLN THR LYS LEU ARG ILE SER ASN SEQRES 27 A 876 ARG PRO ALA PHE MET PRO SER GLU GLY LYS MET VAL SER SEQRES 28 A 876 ASP ILE ALA GLY ALA TRP GLN ARG LEU GLU GLN ALA GLU SEQRES 29 A 876 LYS GLY TYR GLU GLU TRP LEU LEU ASN GLU ILE ARG ARG SEQRES 30 A 876 LEU GLU ARG LEU GLU HIS LEU ALA GLU LYS PHE ARG GLN SEQRES 31 A 876 LYS ALA SER THR HIS GLU THR TRP ALA TYR GLY LYS GLU SEQRES 32 A 876 GLN ILE LEU LEU GLN LYS ASP TYR GLU SER ALA SER LEU SEQRES 33 A 876 THR GLU VAL ARG ALA LEU LEU ARG MLZ HIS GLU ALA PHE SEQRES 34 A 876 GLU SER ASP LEU ALA ALA HIS GLN ASP ARG VAL GLU GLN SEQRES 35 A 876 ILE ALA ALA ILE ALA GLN GLU LEU ASN GLU LEU ASP TYR SEQRES 36 A 876 HIS ASP ALA VAL ASN VAL ASN ASP ARG CYS GLN LYS ILE SEQRES 37 A 876 CYS ASP GLN TRP ASP ARG LEU GLY THR LEU THR GLN LYS SEQRES 38 A 876 ARG ARG GLU ALA LEU GLU ARG MET GLU LYS LEU LEU GLU SEQRES 39 A 876 THR ILE ASP GLN LEU HIS LEU GLU PHE ALA LYS ARG ALA SEQRES 40 A 876 ALA PRO PHE ASN ASN TRP MET GLU GLY ALA MET GLU ASP SEQRES 41 A 876 LEU GLN ASP MET PHE ILE VAL HIS SER ILE GLU GLU ILE SEQRES 42 A 876 GLN SER LEU ILE THR ALA HIS GLU GLN PHE MLZ ALA THR SEQRES 43 A 876 LEU PRO GLU ALA ASP GLY GLU ARG GLN SER ILE MET ALA SEQRES 44 A 876 ILE GLN ASN GLU VAL GLU LYS VAL ILE GLN SER TYR ASN SEQRES 45 A 876 ILE ARG ILE SER SER SER ASN PRO TYR SER THR VAL THR SEQRES 46 A 876 MET ASP GLU LEU ARG THR LYS TRP ASP LYS VAL LYS GLN SEQRES 47 A 876 LEU VAL PRO ILE ARG ASP GLN SER LEU GLN GLU GLU LEU SEQRES 48 A 876 ALA ARG GLN HIS ALA ASN GLU ARG LEU ARG ARG GLN PHE SEQRES 49 A 876 ALA ALA GLN ALA ASN ALA ILE GLY PRO TRP ILE GLN ASN SEQRES 50 A 876 LYS MET GLU GLU ILE ALA ARG SER SER ILE GLN ILE THR SEQRES 51 A 876 GLY ALA LEU GLU ASP GLN MET ASN GLN LEU LYS GLN TYR SEQRES 52 A 876 GLU HIS ASN ILE ILE ASN TYR MLZ ASN ASN ILE ASP LYS SEQRES 53 A 876 LEU GLU GLY ASP HIS GLN LEU ILE GLN GLU ALA LEU VAL SEQRES 54 A 876 PHE ASP ASN LYS HIS THR ASN TYR THR MET GLU HIS ILE SEQRES 55 A 876 ARG VAL GLY TRP GLU LEU LEU LEU THR THR ILE ALA ARG SEQRES 56 A 876 THR ILE ASN GLU VAL GLU THR GLN ILE LEU THR ARG ASP SEQRES 57 A 876 ALA LYS GLY ILE THR GLN GLU GLN MET ASN GLU PHE ARG SEQRES 58 A 876 ALA SER PHE ASN HIS PHE ASP ARG ARG LYS ASN GLY LEU SEQRES 59 A 876 MET ASP HIS GLU ASP PHE ARG ALA CYS LEU ILE SER MET SEQRES 60 A 876 GLY TYR ASP LEU GLY GLU ALA GLU PHE ALA ARG ILE MET SEQRES 61 A 876 THR LEU VAL ASP PRO ASN GLY GLN GLY THR VAL THR PHE SEQRES 62 A 876 GLN SER PHE ILE ASP PHE MET THR ARG GLU THR ALA ASP SEQRES 63 A 876 THR ASP THR ALA GLU GLN VAL ILE ALA SER PHE ARG ILE SEQRES 64 A 876 LEU ALA SER ASP LYS PRO TYR ILE LEU ALA GLU GLU LEU SEQRES 65 A 876 ARG ARG GLU LEU PRO PRO ASP GLN ALA GLN TYR CYS ILE SEQRES 66 A 876 LYS ARG MET PRO ALA TYR SER GLY PRO GLY SER VAL PRO SEQRES 67 A 876 GLY ALA LEU ASP TYR ALA ALA PHE SER SER ALA LEU TYR SEQRES 68 A 876 GLY GLU SER ASP LEU MODRES 4D1E MLZ A 42 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 71 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 96 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 102 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 164 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 181 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 239 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 319 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 329 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 331 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 443 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 562 LYS N-METHYL-LYSINE MODRES 4D1E MLZ A 689 LYS N-METHYL-LYSINE HET MLZ A 42 10 HET MLZ A 71 10 HET MLZ A 96 10 HET MLZ A 102 10 HET MLZ A 164 10 HET MLZ A 181 10 HET MLZ A 239 10 HET MLZ A 319 10 HET MLZ A 329 10 HET MLZ A 331 10 HET MLZ A 443 10 HET MLZ A 562 10 HET MLZ A 689 10 HETNAM MLZ N-METHYL-LYSINE FORMUL 1 MLZ 13(C7 H16 N2 O2) HELIX 1 1 ALA A 35 GLY A 56 1 22 HELIX 2 2 ASN A 61 PHE A 66 1 6 HELIX 3 3 GLY A 69 GLY A 81 1 13 HELIX 4 4 MET A 92 GLY A 111 1 20 HELIX 5 5 ALA A 119 ASP A 124 1 6 HELIX 6 6 ASN A 126 ALA A 142 1 17 HELIX 7 7 ALA A 153 THR A 165 1 13 HELIX 8 8 GLY A 183 ARG A 194 1 12 HELIX 9 9 PRO A 195 ILE A 198 5 4 HELIX 10 10 ASP A 207 LYS A 221 1 15 HELIX 11 11 ASP A 230 THR A 237 1 8 HELIX 12 12 ASP A 241 ALA A 257 1 17 HELIX 13 13 GLY A 258 LEU A 282 1 25 HELIX 14 14 GLU A 284 LEU A 294 1 11 HELIX 15 15 GLU A 295 ASN A 306 1 12 HELIX 16 16 MET A 313 HIS A 330 1 18 HELIX 17 17 HIS A 330 SER A 355 1 26 HELIX 18 18 MET A 367 SER A 369 5 3 HELIX 19 19 ASP A 370 LEU A 389 1 20 HELIX 20 20 GLU A 392 TYR A 418 1 27 HELIX 21 21 GLU A 421 GLN A 426 1 6 HELIX 22 22 SER A 433 LEU A 471 1 39 HELIX 23 23 ASP A 475 GLN A 540 1 66 HELIX 24 24 SER A 547 ASN A 590 1 44 HELIX 25 25 THR A 603 ILE A 665 1 63 HELIX 26 26 ALA A 670 ALA A 705 1 36 HELIX 27 27 GLU A 718 ALA A 747 1 30 HELIX 28 28 GLN A 752 ASN A 763 1 12 HELIX 29 29 GLU A 776 MET A 785 1 10 HELIX 30 30 GLU A 793 LEU A 800 1 8 HELIX 31 31 PHE A 811 GLU A 821 1 11 HELIX 32 32 THR A 827 ARG A 836 1 10 HELIX 33 33 LEU A 846 LEU A 854 1 9 HELIX 34 34 PRO A 855 MET A 866 1 12 HELIX 35 35 ASP A 880 TYR A 889 1 10 SHEET 1 AA 2 SER A 147 VAL A 148 0 SHEET 2 AA 2 THR A 151 SER A 152 -1 O THR A 151 N VAL A 148 LINK C ARG A 41 N MLZ A 42 1555 1555 1.33 LINK C MLZ A 42 N THR A 43 1555 1555 1.33 LINK C LEU A 70 N MLZ A 71 1555 1555 1.32 LINK C MLZ A 71 N LEU A 72 1555 1555 1.33 LINK C HIS A 95 N MLZ A 96 1555 1555 1.32 LINK C MLZ A 96 N ILE A 97 1555 1555 1.33 LINK C ASN A 101 N MLZ A 102 1555 1555 1.33 LINK C MLZ A 102 N ALA A 103 1555 1555 1.32 LINK C ARG A 163 N MLZ A 164 1555 1555 1.30 LINK C MLZ A 164 N THR A 165 1555 1555 1.33 LINK C TRP A 180 N MLZ A 181 1555 1555 1.33 LINK C MLZ A 181 N ASP A 182 1555 1555 1.33 LINK C PRO A 238 N MLZ A 239 1555 1555 1.33 LINK C MLZ A 239 N PRO A 240 1555 1555 1.34 LINK C LYS A 318 N MLZ A 319 1555 1555 1.32 LINK C MLZ A 319 N LEU A 320 1555 1555 1.33 LINK C ARG A 328 N MLZ A 329 1555 1555 1.34 LINK C MLZ A 329 N HIS A 330 1555 1555 1.33 LINK C HIS A 330 N MLZ A 331 1555 1555 1.32 LINK C MLZ A 331 N PRO A 332 1555 1555 1.35 LINK C ARG A 442 N MLZ A 443 1555 1555 1.32 LINK C MLZ A 443 N HIS A 444 1555 1555 1.32 LINK C PHE A 561 N MLZ A 562 1555 1555 1.32 LINK C MLZ A 562 N ALA A 563 1555 1555 1.32 LINK C TYR A 688 N MLZ A 689 1555 1555 1.33 LINK C MLZ A 689 N ASN A 690 1555 1555 1.33 CISPEP 1 ASN A 68 GLY A 69 0 -1.55 CISPEP 2 PRO A 226 LYS A 227 0 26.27 CISPEP 3 PRO A 358 ALA A 359 0 -3.07 CISPEP 4 ALA A 359 PHE A 360 0 2.03 CISPEP 5 GLY A 669 ALA A 670 0 -13.84 CISPEP 6 THR A 751 GLN A 752 0 -1.35 CISPEP 7 ARG A 767 ARG A 768 0 -16.22 CISPEP 8 MET A 773 ASP A 774 0 18.84 CISPEP 9 MET A 785 GLY A 786 0 -1.06 CRYST1 73.334 102.613 182.977 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005465 0.00000