PDB Short entry for 4D2G HEADER TRANSCRIPTION 09-MAY-14 4D2G TITLE CRYSTAL STRUCTURE OF HUMAN PCNA IN COMPLEX WITH P15 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PCNA, CYCLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: P15; COMPND 8 CHAIN: D, E; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET24D; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: CDFDUET1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR A.DEBIASIO,A.IBANEZ,G.MORTUZA,R.MOLINA,T.N.CORDEIRO,F.CASTILLO, AUTHOR 2 M.VILLATE,N.MERINO,M.LELLI,T.DIERCKS,I.LUQUE,P.BERNARDO,G.MONTOYA, AUTHOR 3 F.J.BLANCO REVDAT 3 20-DEC-23 4D2G 1 REMARK REVDAT 2 25-MAR-15 4D2G 1 JRNL REVDAT 1 18-MAR-15 4D2G 0 JRNL AUTH A.DE BIASIO,A.I.DE OPAKUA,G.B.MORTUZA,R.MOLINA,T.N.CORDEIRO, JRNL AUTH 2 F.CASTILLO,M.VILLATE,N.MERINO,S.DELGADO,D.GIL-CARTON, JRNL AUTH 3 I.LUQUE,T.DIERCKS,P.BERNADO,G.MONTOYA,F.J.BLANCO JRNL TITL STRUCTURE OF P15(PAF)-PCNA COMPLEX AND IMPLICATIONS FOR JRNL TITL 2 CLAMP SLIDING DURING DNA REPLICATION AND REPAIR. JRNL REF NAT.COMMUN. V. 6 6439 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25762514 JRNL DOI 10.1038/NCOMMS7439 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 24817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3544 - 5.5093 0.99 2772 146 0.1891 0.2711 REMARK 3 2 5.5093 - 4.3741 0.99 2674 140 0.1453 0.1984 REMARK 3 3 4.3741 - 3.8216 0.99 2630 139 0.1531 0.2121 REMARK 3 4 3.8216 - 3.4723 0.99 2624 138 0.1568 0.2437 REMARK 3 5 3.4723 - 3.2235 1.00 2637 139 0.1630 0.2851 REMARK 3 6 3.2235 - 3.0335 1.00 2630 138 0.1837 0.2709 REMARK 3 7 3.0335 - 2.8816 1.00 2606 137 0.1944 0.2916 REMARK 3 8 2.8816 - 2.7562 1.00 2616 138 0.2072 0.3089 REMARK 3 9 2.7562 - 2.6501 0.90 2387 126 0.2264 0.3402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 6361 REMARK 3 ANGLE : 1.786 8596 REMARK 3 CHIRALITY : 0.073 1005 REMARK 3 PLANARITY : 0.008 1105 REMARK 3 DIHEDRAL : 16.356 2374 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.4415 -4.7876 -35.7624 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.1575 REMARK 3 T33: 0.1907 T12: 0.0116 REMARK 3 T13: 0.0039 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.1712 L22: 0.0715 REMARK 3 L33: 0.2615 L12: 0.0134 REMARK 3 L13: 0.0078 L23: -0.1409 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: -0.0164 S13: -0.0015 REMARK 3 S21: -0.0138 S22: -0.0161 S23: 0.0049 REMARK 3 S31: -0.0106 S32: 0.0091 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1290059742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24870 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 44.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1VYM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 300 IN 0.1 MM PHOSPHATE REMARK 280 -CITRATE PH 4.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.61400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 GLU B 256 REMARK 465 ASP B 257 REMARK 465 GLU B 258 REMARK 465 GLU B 259 REMARK 465 GLY B 260 REMARK 465 SER B 261 REMARK 465 GLU C 256 REMARK 465 ASP C 257 REMARK 465 GLU C 258 REMARK 465 GLU C 259 REMARK 465 GLY C 260 REMARK 465 SER C 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 117 O HOH B 2026 0.48 REMARK 500 CG2 THR A 196 O HOH A 2061 0.87 REMARK 500 C LYS B 117 O HOH B 2026 1.19 REMARK 500 CD1 PHE B 169 O HOH B 2044 1.23 REMARK 500 CG PHE B 169 O HOH B 2044 1.47 REMARK 500 CE1 PHE B 169 O HOH B 2044 1.68 REMARK 500 CB PRO C 202 O HOH C 2044 1.81 REMARK 500 N LEU B 118 O HOH B 2026 1.93 REMARK 500 O HOH A 2037 O HOH A 2041 1.96 REMARK 500 CG PRO C 202 O HOH C 2044 1.99 REMARK 500 ND2 ASN B 107 O HOH B 2022 2.00 REMARK 500 CD2 PHE B 169 O HOH B 2044 2.01 REMARK 500 OE1 GLN B 184 O HOH B 2039 2.07 REMARK 500 OD1 ASP A 243 O HOH A 2072 2.09 REMARK 500 OE2 GLU A 191 O HOH A 2043 2.10 REMARK 500 O LYS B 164 O HOH B 2039 2.13 REMARK 500 NZ LYS A 138 OE2 GLU A 191 2.14 REMARK 500 OG SER C 134 O HOH C 2032 2.16 REMARK 500 CZ PHE B 169 O HOH B 2044 2.17 REMARK 500 O LEU A 126 N ILE A 128 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND1 HIS A 44 OE2 GLU C 109 1565 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 127 C GLY A 127 O 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 22 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP B 189 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 125 161.38 67.41 REMARK 500 LEU A 126 21.63 173.15 REMARK 500 ALA A 163 -166.50 -129.49 REMARK 500 SER A 172 143.87 -170.36 REMARK 500 ASN A 187 -139.11 4.97 REMARK 500 SER B 42 -14.24 -44.09 REMARK 500 ASP B 94 -59.88 65.38 REMARK 500 ALA B 96 156.90 53.36 REMARK 500 GLN B 108 16.38 83.59 REMARK 500 ALA B 163 -168.35 -102.99 REMARK 500 ASN B 187 -161.82 69.76 REMARK 500 VAL B 188 33.61 16.49 REMARK 500 LYS B 190 -145.50 62.82 REMARK 500 GLU B 191 -57.59 -160.79 REMARK 500 ALA B 242 -138.55 56.84 REMARK 500 SER C 42 -37.61 -34.58 REMARK 500 ASP C 94 98.74 -61.92 REMARK 500 ASN C 95 -142.74 155.20 REMARK 500 ALA C 96 153.91 30.12 REMARK 500 GLN C 108 -2.65 80.74 REMARK 500 SER C 186 -76.03 -1.35 REMARK 500 ASN C 187 115.66 169.79 REMARK 500 GLU C 191 -84.23 76.41 REMARK 500 GLU C 192 47.65 -65.21 REMARK 500 ASP C 243 27.70 37.96 REMARK 500 PHE D 68 -41.62 -133.19 REMARK 500 VAL E 53 113.62 94.49 REMARK 500 ARG E 56 121.37 -0.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 232 VAL A 233 149.02 REMARK 500 ASN B 187 VAL B 188 -137.81 REMARK 500 VAL B 188 ASP B 189 138.67 REMARK 500 LYS B 190 GLU B 191 148.73 REMARK 500 SER C 186 ASN C 187 149.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3002 DISTANCE = 6.38 ANGSTROMS DBREF 4D2G A 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 4D2G B 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 4D2G C 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 4D2G D 51 71 PDB 4D2G 4D2G 51 71 DBREF 4D2G E 51 71 PDB 4D2G 4D2G 51 71 SEQADV 4D2G GLY A -2 UNP P12004 EXPRESSION TAG SEQADV 4D2G PRO A -1 UNP P12004 EXPRESSION TAG SEQADV 4D2G HIS A 0 UNP P12004 EXPRESSION TAG SEQADV 4D2G GLY B -2 UNP P12004 EXPRESSION TAG SEQADV 4D2G PRO B -1 UNP P12004 EXPRESSION TAG SEQADV 4D2G HIS B 0 UNP P12004 EXPRESSION TAG SEQADV 4D2G GLY C -2 UNP P12004 EXPRESSION TAG SEQADV 4D2G PRO C -1 UNP P12004 EXPRESSION TAG SEQADV 4D2G HIS C 0 UNP P12004 EXPRESSION TAG SEQRES 1 A 264 GLY PRO HIS MET PHE GLU ALA ARG LEU VAL GLN GLY SER SEQRES 2 A 264 ILE LEU LYS LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE SEQRES 3 A 264 ASN GLU ALA CYS TRP ASP ILE SER SER SER GLY VAL ASN SEQRES 4 A 264 LEU GLN SER MET ASP SER SER HIS VAL SER LEU VAL GLN SEQRES 5 A 264 LEU THR LEU ARG SER GLU GLY PHE ASP THR TYR ARG CYS SEQRES 6 A 264 ASP ARG ASN LEU ALA MET GLY VAL ASN LEU THR SER MET SEQRES 7 A 264 SER LYS ILE LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE SEQRES 8 A 264 THR LEU ARG ALA GLU ASP ASN ALA ASP THR LEU ALA LEU SEQRES 9 A 264 VAL PHE GLU ALA PRO ASN GLN GLU LYS VAL SER ASP TYR SEQRES 10 A 264 GLU MET LYS LEU MET ASP LEU ASP VAL GLU GLN LEU GLY SEQRES 11 A 264 ILE PRO GLU GLN GLU TYR SER CYS VAL VAL LYS MET PRO SEQRES 12 A 264 SER GLY GLU PHE ALA ARG ILE CYS ARG ASP LEU SER HIS SEQRES 13 A 264 ILE GLY ASP ALA VAL VAL ILE SER CYS ALA LYS ASP GLY SEQRES 14 A 264 VAL LYS PHE SER ALA SER GLY GLU LEU GLY ASN GLY ASN SEQRES 15 A 264 ILE LYS LEU SER GLN THR SER ASN VAL ASP LYS GLU GLU SEQRES 16 A 264 GLU ALA VAL THR ILE GLU MET ASN GLU PRO VAL GLN LEU SEQRES 17 A 264 THR PHE ALA LEU ARG TYR LEU ASN PHE PHE THR LYS ALA SEQRES 18 A 264 THR PRO LEU SER SER THR VAL THR LEU SER MET SER ALA SEQRES 19 A 264 ASP VAL PRO LEU VAL VAL GLU TYR LYS ILE ALA ASP MET SEQRES 20 A 264 GLY HIS LEU LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP SEQRES 21 A 264 GLU GLU GLY SER SEQRES 1 B 264 GLY PRO HIS MET PHE GLU ALA ARG LEU VAL GLN GLY SER SEQRES 2 B 264 ILE LEU LYS LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE SEQRES 3 B 264 ASN GLU ALA CYS TRP ASP ILE SER SER SER GLY VAL ASN SEQRES 4 B 264 LEU GLN SER MET ASP SER SER HIS VAL SER LEU VAL GLN SEQRES 5 B 264 LEU THR LEU ARG SER GLU GLY PHE ASP THR TYR ARG CYS SEQRES 6 B 264 ASP ARG ASN LEU ALA MET GLY VAL ASN LEU THR SER MET SEQRES 7 B 264 SER LYS ILE LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE SEQRES 8 B 264 THR LEU ARG ALA GLU ASP ASN ALA ASP THR LEU ALA LEU SEQRES 9 B 264 VAL PHE GLU ALA PRO ASN GLN GLU LYS VAL SER ASP TYR SEQRES 10 B 264 GLU MET LYS LEU MET ASP LEU ASP VAL GLU GLN LEU GLY SEQRES 11 B 264 ILE PRO GLU GLN GLU TYR SER CYS VAL VAL LYS MET PRO SEQRES 12 B 264 SER GLY GLU PHE ALA ARG ILE CYS ARG ASP LEU SER HIS SEQRES 13 B 264 ILE GLY ASP ALA VAL VAL ILE SER CYS ALA LYS ASP GLY SEQRES 14 B 264 VAL LYS PHE SER ALA SER GLY GLU LEU GLY ASN GLY ASN SEQRES 15 B 264 ILE LYS LEU SER GLN THR SER ASN VAL ASP LYS GLU GLU SEQRES 16 B 264 GLU ALA VAL THR ILE GLU MET ASN GLU PRO VAL GLN LEU SEQRES 17 B 264 THR PHE ALA LEU ARG TYR LEU ASN PHE PHE THR LYS ALA SEQRES 18 B 264 THR PRO LEU SER SER THR VAL THR LEU SER MET SER ALA SEQRES 19 B 264 ASP VAL PRO LEU VAL VAL GLU TYR LYS ILE ALA ASP MET SEQRES 20 B 264 GLY HIS LEU LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP SEQRES 21 B 264 GLU GLU GLY SER SEQRES 1 C 264 GLY PRO HIS MET PHE GLU ALA ARG LEU VAL GLN GLY SER SEQRES 2 C 264 ILE LEU LYS LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE SEQRES 3 C 264 ASN GLU ALA CYS TRP ASP ILE SER SER SER GLY VAL ASN SEQRES 4 C 264 LEU GLN SER MET ASP SER SER HIS VAL SER LEU VAL GLN SEQRES 5 C 264 LEU THR LEU ARG SER GLU GLY PHE ASP THR TYR ARG CYS SEQRES 6 C 264 ASP ARG ASN LEU ALA MET GLY VAL ASN LEU THR SER MET SEQRES 7 C 264 SER LYS ILE LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE SEQRES 8 C 264 THR LEU ARG ALA GLU ASP ASN ALA ASP THR LEU ALA LEU SEQRES 9 C 264 VAL PHE GLU ALA PRO ASN GLN GLU LYS VAL SER ASP TYR SEQRES 10 C 264 GLU MET LYS LEU MET ASP LEU ASP VAL GLU GLN LEU GLY SEQRES 11 C 264 ILE PRO GLU GLN GLU TYR SER CYS VAL VAL LYS MET PRO SEQRES 12 C 264 SER GLY GLU PHE ALA ARG ILE CYS ARG ASP LEU SER HIS SEQRES 13 C 264 ILE GLY ASP ALA VAL VAL ILE SER CYS ALA LYS ASP GLY SEQRES 14 C 264 VAL LYS PHE SER ALA SER GLY GLU LEU GLY ASN GLY ASN SEQRES 15 C 264 ILE LYS LEU SER GLN THR SER ASN VAL ASP LYS GLU GLU SEQRES 16 C 264 GLU ALA VAL THR ILE GLU MET ASN GLU PRO VAL GLN LEU SEQRES 17 C 264 THR PHE ALA LEU ARG TYR LEU ASN PHE PHE THR LYS ALA SEQRES 18 C 264 THR PRO LEU SER SER THR VAL THR LEU SER MET SER ALA SEQRES 19 C 264 ASP VAL PRO LEU VAL VAL GLU TYR LYS ILE ALA ASP MET SEQRES 20 C 264 GLY HIS LEU LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP SEQRES 21 C 264 GLU GLU GLY SER SEQRES 1 D 21 ALA PRO VAL CYS VAL ARG PRO THR PRO LYS TRP GLN LYS SEQRES 2 D 21 GLY ILE GLY GLU PHE PHE ALA ALA SEQRES 1 E 21 ALA PRO VAL CYS VAL ARG PRO THR PRO LYS TRP GLN LYS SEQRES 2 E 21 GLY ILE GLY GLU PHE PHE ALA ALA FORMUL 6 HOH *196(H2 O) HELIX 1 1 GLY A 9 ASP A 21 1 13 HELIX 2 2 GLU A 55 PHE A 57 5 3 HELIX 3 3 LEU A 72 LYS A 80 1 9 HELIX 4 4 SER A 141 GLY A 155 1 15 HELIX 5 5 LEU A 209 THR A 216 1 8 HELIX 6 6 LYS A 217 SER A 222 5 6 HELIX 7 7 GLY B 9 LYS B 20 1 12 HELIX 8 8 GLU B 55 PHE B 57 5 3 HELIX 9 9 LEU B 72 CYS B 81 1 10 HELIX 10 10 SER B 141 HIS B 153 1 13 HELIX 11 11 LEU B 209 THR B 216 1 8 HELIX 12 12 LYS B 217 SER B 222 5 6 HELIX 13 13 GLY C 9 ALA C 18 1 10 HELIX 14 14 GLU C 55 PHE C 57 5 3 HELIX 15 15 LEU C 72 LYS C 80 1 9 HELIX 16 16 SER C 141 SER C 152 1 12 HELIX 17 17 LEU C 209 THR C 216 1 8 HELIX 18 18 LYS C 217 SER C 222 5 6 HELIX 19 19 GLY D 64 PHE D 68 5 5 HELIX 20 20 GLY E 64 PHE E 68 5 5 SHEET 1 AA 9 THR A 59 CYS A 62 0 SHEET 2 AA 9 MET A 1 LEU A 6 -1 O GLU A 3 N ARG A 61 SHEET 3 AA 9 ILE A 87 GLU A 93 -1 O ILE A 88 N LEU A 6 SHEET 4 AA 9 THR A 98 GLU A 104 -1 O ALA A 100 N ARG A 91 SHEET 5 AA 9 LYS A 110 LYS A 117 -1 O SER A 112 N PHE A 103 SHEET 6 AA 9 GLY B 176 SER B 183 -1 O ASN B 177 N GLU A 115 SHEET 7 AA 9 GLY B 166 GLY B 173 -1 O VAL B 167 N LEU B 182 SHEET 8 AA 9 ALA B 157 CYS B 162 -1 O VAL B 159 N SER B 170 SHEET 9 AA 9 VAL B 203 ALA B 208 -1 O VAL B 203 N CYS B 162 SHEET 1 AB 9 LEU A 66 ASN A 71 0 SHEET 2 AB 9 GLU A 25 ILE A 30 -1 O ALA A 26 N VAL A 70 SHEET 3 AB 9 GLY A 34 MET A 40 -1 O ASN A 36 N ASP A 29 SHEET 4 AB 9 SER A 46 ARG A 53 -1 O VAL A 48 N SER A 39 SHEET 5 AB 9 GLY A 245 LEU A 251 -1 O HIS A 246 N THR A 51 SHEET 6 AB 9 VAL A 233 ILE A 241 -1 O LEU A 235 N LEU A 251 SHEET 7 AB 9 THR A 224 SER A 230 -1 O THR A 226 N GLU A 238 SHEET 8 AB 9 CYS A 135 PRO A 140 -1 O CYS A 135 N MET A 229 SHEET 9 AB 9 THR A 196 MET A 199 -1 O THR A 196 N LYS A 138 SHEET 1 AC 9 VAL A 203 ALA A 208 0 SHEET 2 AC 9 ALA A 157 CYS A 162 -1 O VAL A 158 N PHE A 207 SHEET 3 AC 9 GLY A 166 SER A 172 -1 O LYS A 168 N SER A 161 SHEET 4 AC 9 GLY A 176 SER A 183 -1 O GLY A 178 N ALA A 171 SHEET 5 AC 9 LYS C 110 LYS C 117 -1 O VAL C 111 N LYS A 181 SHEET 6 AC 9 THR C 98 GLU C 104 -1 O LEU C 99 N MET C 116 SHEET 7 AC 9 ILE C 87 GLU C 93 -1 O ILE C 87 N GLU C 104 SHEET 8 AC 9 MET C 1 LEU C 6 -1 O PHE C 2 N ALA C 92 SHEET 9 AC 9 THR C 59 CYS C 62 -1 O THR C 59 N ARG C 5 SHEET 1 BA 9 THR B 59 CYS B 62 0 SHEET 2 BA 9 PHE B 2 LEU B 6 -1 O GLU B 3 N ARG B 61 SHEET 3 BA 9 ILE B 87 ALA B 92 -1 O ILE B 88 N LEU B 6 SHEET 4 BA 9 THR B 98 GLU B 104 -1 O ALA B 100 N ARG B 91 SHEET 5 BA 9 LYS B 110 LYS B 117 -1 O SER B 112 N PHE B 103 SHEET 6 BA 9 GLY C 176 SER C 183 -1 O ASN C 177 N GLU B 115 SHEET 7 BA 9 GLY C 166 SER C 172 -1 O VAL C 167 N LEU C 182 SHEET 8 BA 9 ALA C 157 CYS C 162 -1 O VAL C 159 N SER C 170 SHEET 9 BA 9 VAL C 203 ALA C 208 -1 O VAL C 203 N CYS C 162 SHEET 1 BB 9 LEU B 66 ASN B 71 0 SHEET 2 BB 9 GLU B 25 SER B 31 -1 O ALA B 26 N VAL B 70 SHEET 3 BB 9 GLY B 34 MET B 40 -1 O GLY B 34 N SER B 31 SHEET 4 BB 9 SER B 46 ARG B 53 -1 O VAL B 48 N SER B 39 SHEET 5 BB 9 GLY B 245 LEU B 251 -1 O HIS B 246 N THR B 51 SHEET 6 BB 9 VAL B 233 ILE B 241 -1 O LEU B 235 N LEU B 251 SHEET 7 BB 9 THR B 224 SER B 230 -1 O THR B 226 N GLU B 238 SHEET 8 BB 9 CYS B 135 PRO B 140 -1 O CYS B 135 N MET B 229 SHEET 9 BB 9 THR B 196 MET B 199 -1 O THR B 196 N LYS B 138 SHEET 1 CA 9 LEU C 66 ASN C 71 0 SHEET 2 CA 9 GLU C 25 ILE C 30 -1 O ALA C 26 N VAL C 70 SHEET 3 CA 9 GLY C 34 MET C 40 -1 O ASN C 36 N ASP C 29 SHEET 4 CA 9 LEU C 47 ARG C 53 -1 O VAL C 48 N SER C 39 SHEET 5 CA 9 GLY C 245 LEU C 251 -1 O HIS C 246 N THR C 51 SHEET 6 CA 9 VAL C 233 ILE C 241 -1 O LEU C 235 N LEU C 251 SHEET 7 CA 9 THR C 224 SER C 230 -1 O THR C 226 N GLU C 238 SHEET 8 CA 9 CYS C 135 PRO C 140 -1 O CYS C 135 N MET C 229 SHEET 9 CA 9 THR C 196 MET C 199 -1 O THR C 196 N LYS C 138 SSBOND 1 CYS B 135 CYS B 162 1555 1555 2.10 CRYST1 76.053 41.228 141.121 90.00 105.39 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013149 0.000000 0.003619 0.00000 SCALE2 0.000000 0.024255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007350 0.00000