PDB Short entry for 4D87 HEADER OXIDOREDUCTASE 10-JAN-12 4D87 TITLE CRYSTAL STRUCTURE OF TYROSINASE FROM BACILLUS MEGATERIUM IN COMPLEX TITLE 2 WITH SDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.18.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS MEGATERIUM; SOURCE 3 ORGANISM_TAXID: 1404; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET9D KEYWDS TYPE 3 COPPER PROTEIN, TYROSINASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ADIR,M.GOLDFEDER,A.FISHMAN REVDAT 3 28-FEB-24 4D87 1 REMARK SEQADV LINK REVDAT 2 27-FEB-13 4D87 1 JRNL REVDAT 1 20-JUN-12 4D87 0 JRNL AUTH M.GOLDFEDER,M.EGOZY,V.SHUSTER BEN-YOSEF,N.ADIR,A.FISHMAN JRNL TITL CHANGES IN TYROSINASE SPECIFICITY BY IONIC LIQUIDS AND JRNL TITL 2 SODIUM DODECYL SULFATE. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 97 1953 2013 JRNL REFN ISSN 0175-7598 JRNL PMID 22539021 JRNL DOI 10.1007/S00253-012-4050-Z REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 5980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 650 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 411 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4683 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.886 REMARK 3 ESU BASED ON FREE R VALUE (A): 1.001 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.007 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.771 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.691 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4D87 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6631 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 83.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.16200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CACODYLATE, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.57000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 LEU A 290 REMARK 465 ARG A 291 REMARK 465 LYS A 292 REMARK 465 SER A 293 REMARK 465 LYS A 294 REMARK 465 ARG A 295 REMARK 465 SER A 296 REMARK 465 SER A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLU B 289 REMARK 465 LEU B 290 REMARK 465 ARG B 291 REMARK 465 LYS B 292 REMARK 465 SER B 293 REMARK 465 LYS B 294 REMARK 465 ARG B 295 REMARK 465 SER B 296 REMARK 465 SER B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 138 O GLY A 148 1.17 REMARK 500 O THR A 17 OD2 ASP A 21 1.35 REMARK 500 NE2 HIS A 60 CU CU A 401 1.49 REMARK 500 OD1 ASN A 57 O HIS A 60 1.50 REMARK 500 NE2 HIS A 42 CU CU A 401 1.59 REMARK 500 OG SER B 63 OD2 ASP B 178 1.61 REMARK 500 OG SER B 62 OE1 GLN B 260 1.63 REMARK 500 NH1 ARG B 8 CE2 TYR B 284 1.63 REMARK 500 CG LYS B 4 CD ARG B 280 1.68 REMARK 500 OH TYR B 38 O ARG B 75 1.70 REMARK 500 OH TYR B 91 OD1 ASP B 287 1.72 REMARK 500 CG2 THR B 138 OD1 ASN B 223 1.74 REMARK 500 CA LYS B 254 ND2 ASN B 261 1.74 REMARK 500 O VAL B 217 CD PRO B 219 1.75 REMARK 500 CG LYS B 4 CG ARG B 280 1.77 REMARK 500 NH2 ARG B 70 OE1 GLN B 242 1.80 REMARK 500 NH1 ARG A 8 OE1 GLU A 77 1.81 REMARK 500 OE1 GLU B 71 CG2 THR B 271 1.82 REMARK 500 CG2 THR B 15 OE1 GLU B 18 1.84 REMARK 500 OE2 GLU B 71 NH2 ARG B 75 1.86 REMARK 500 NH2 ARG B 8 OH TYR B 286 1.87 REMARK 500 O TYR B 38 OH TYR B 72 1.88 REMARK 500 NH1 ARG B 8 CD2 TYR B 284 1.90 REMARK 500 O ASP A 16 N GLU A 18 1.91 REMARK 500 CG2 THR A 15 OE1 GLU A 18 1.93 REMARK 500 NH1 ARG B 70 O VAL B 276 1.93 REMARK 500 O THR B 138 OG SER B 146 1.94 REMARK 500 NH1 ARG A 8 CD GLU A 77 1.94 REMARK 500 O VAL B 218 N ALA B 221 1.94 REMARK 500 NE2 GLN A 142 CE LYS B 47 1.97 REMARK 500 OD1 ASP A 102 OG SER A 104 1.98 REMARK 500 OG SER B 62 CD GLN B 260 1.99 REMARK 500 O SER B 63 OH TYR B 250 2.03 REMARK 500 O TYR A 38 OH TYR A 72 2.03 REMARK 500 O GLU B 71 CG ARG B 75 2.04 REMARK 500 CG2 THR A 138 C GLY A 148 2.05 REMARK 500 CG ARG A 8 O LEU A 89 2.05 REMARK 500 CG2 VAL A 217 OG1 THR A 220 2.05 REMARK 500 OG SER B 54 N ARG B 56 2.06 REMARK 500 CD2 PHE B 153 CH2 TRP B 210 2.06 REMARK 500 O ARG A 280 N GLY A 283 2.08 REMARK 500 NE2 GLN B 81 O PRO B 85 2.10 REMARK 500 NH1 ARG A 8 OE2 GLU A 77 2.11 REMARK 500 NE2 GLN A 142 NZ LYS B 47 2.12 REMARK 500 O ASP A 16 N LYS A 19 2.13 REMARK 500 NE2 HIS A 42 NE2 HIS A 69 2.13 REMARK 500 O SER A 54 N ARG A 56 2.13 REMARK 500 CB GLU A 158 NH2 ARG A 209 2.14 REMARK 500 O TYR A 286 N ILE A 288 2.14 REMARK 500 CZ ARG B 8 CE2 TYR B 284 2.15 REMARK 500 REMARK 500 THIS ENTRY HAS 56 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 139 CB - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 PHE B 22 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 SER B 54 CB - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 ALA B 58 CB - CA - C ANGL. DEV. = 11.2 DEGREES REMARK 500 ALA B 59 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 SER B 62 CB - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 PRO B 85 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 SER B 110 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 GLY B 147 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 GLY B 148 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 ASP B 183 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 VAL B 207 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 HIS B 208 CB - CA - C ANGL. DEV. = -24.8 DEGREES REMARK 500 PRO B 219 C - N - CD ANGL. DEV. = -18.3 DEGREES REMARK 500 ASP B 287 CB - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 ASP B 287 N - CA - C ANGL. DEV. = -24.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 5 -76.09 -124.22 REMARK 500 ARG A 6 143.03 -31.27 REMARK 500 THR A 17 -32.28 -26.19 REMARK 500 ASP A 55 -45.31 -7.14 REMARK 500 MET A 61 -2.60 95.13 REMARK 500 MET A 100 145.06 -39.11 REMARK 500 PRO A 103 12.07 -61.42 REMARK 500 GLN A 105 -5.28 -59.59 REMARK 500 SER A 106 157.81 -45.12 REMARK 500 PHE A 113 -88.42 -112.96 REMARK 500 LYS A 122 36.84 -96.54 REMARK 500 PRO A 130 12.39 -58.10 REMARK 500 PHE A 131 12.45 -142.06 REMARK 500 ALA A 133 126.17 -20.91 REMARK 500 ASP A 140 -161.54 -120.77 REMARK 500 PRO A 145 136.33 -37.48 REMARK 500 ASN A 152 89.92 -152.73 REMARK 500 ALA A 159 63.75 -150.42 REMARK 500 PRO A 163 163.08 -44.88 REMARK 500 PRO A 180 143.59 -28.00 REMARK 500 PRO A 181 21.23 -79.93 REMARK 500 LEU A 203 -115.72 44.77 REMARK 500 PRO A 222 7.11 -61.41 REMARK 500 ASN A 255 3.40 55.58 REMARK 500 LYS A 281 -16.35 -47.86 REMARK 500 ASP A 287 66.96 -52.66 REMARK 500 ILE A 288 119.68 -170.06 REMARK 500 TYR B 5 -159.09 -99.36 REMARK 500 ARG B 6 72.17 46.79 REMARK 500 ASN B 10 137.43 -38.24 REMARK 500 THR B 15 -164.21 -75.44 REMARK 500 ASP B 21 -72.11 -75.42 REMARK 500 ASP B 36 -33.26 -36.48 REMARK 500 ALA B 45 41.62 -78.11 REMARK 500 PHE B 48 74.77 -100.73 REMARK 500 PRO B 51 -166.89 -73.50 REMARK 500 SER B 54 -179.24 -67.28 REMARK 500 ALA B 58 -11.73 -47.12 REMARK 500 ALA B 59 -67.65 -120.45 REMARK 500 MET B 61 57.45 39.33 REMARK 500 SER B 62 -167.37 -174.24 REMARK 500 ASP B 79 -5.65 -55.35 REMARK 500 ASN B 84 77.37 -157.90 REMARK 500 PRO B 85 -46.56 -27.29 REMARK 500 SER B 104 -8.73 -52.88 REMARK 500 GLN B 105 45.67 -109.75 REMARK 500 GLN B 107 -7.45 -57.60 REMARK 500 ALA B 111 48.07 -108.81 REMARK 500 ASP B 112 -2.00 -151.07 REMARK 500 PHE B 113 -92.52 -116.11 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 42 NE2 REMARK 620 2 HIS B 60 NE2 83.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SDS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NM8 RELATED DB: PDB REMARK 900 RELATED ID: 3NPY RELATED DB: PDB REMARK 900 RELATED ID: 3NQ5 RELATED DB: PDB REMARK 900 RELATED ID: 3NQ0 RELATED DB: PDB REMARK 900 RELATED ID: 3NQ1 RELATED DB: PDB REMARK 900 RELATED ID: 3NTM RELATED DB: PDB DBREF 4D87 A 1 297 UNP B2ZB02 B2ZB02_BACME 1 297 DBREF 4D87 B 1 297 UNP B2ZB02 B2ZB02_BACME 1 297 SEQADV 4D87 HIS A 298 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS A 299 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS A 300 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS A 301 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS A 302 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS A 303 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS B 298 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS B 299 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS B 300 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS B 301 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS B 302 UNP B2ZB02 EXPRESSION TAG SEQADV 4D87 HIS B 303 UNP B2ZB02 EXPRESSION TAG SEQRES 1 A 303 MET SER ASN LYS TYR ARG VAL ARG LYS ASN VAL LEU HIS SEQRES 2 A 303 LEU THR ASP THR GLU LYS ARG ASP PHE VAL ARG THR VAL SEQRES 3 A 303 LEU ILE LEU LYS GLU LYS GLY ILE TYR ASP ARG TYR ILE SEQRES 4 A 303 ALA TRP HIS GLY ALA ALA GLY LYS PHE HIS THR PRO PRO SEQRES 5 A 303 GLY SER ASP ARG ASN ALA ALA HIS MET SER SER ALA PHE SEQRES 6 A 303 LEU PRO TRP HIS ARG GLU TYR LEU LEU ARG PHE GLU ARG SEQRES 7 A 303 ASP LEU GLN SER ILE ASN PRO GLU VAL THR LEU PRO TYR SEQRES 8 A 303 TRP GLU TRP GLU THR ASP ALA GLN MET GLN ASP PRO SER SEQRES 9 A 303 GLN SER GLN ILE TRP SER ALA ASP PHE MET GLY GLY ASN SEQRES 10 A 303 GLY ASN PRO ILE LYS ASP PHE ILE VAL ASP THR GLY PRO SEQRES 11 A 303 PHE ALA ALA GLY ARG TRP THR THR ILE ASP GLU GLN GLY SEQRES 12 A 303 ASN PRO SER GLY GLY LEU LYS ARG ASN PHE GLY ALA THR SEQRES 13 A 303 LYS GLU ALA PRO THR LEU PRO THR ARG ASP ASP VAL LEU SEQRES 14 A 303 ASN ALA LEU LYS ILE THR GLN TYR ASP THR PRO PRO TRP SEQRES 15 A 303 ASP MET THR SER GLN ASN SER PHE ARG ASN GLN LEU GLU SEQRES 16 A 303 GLY PHE ILE ASN GLY PRO GLN LEU HIS ASN ARG VAL HIS SEQRES 17 A 303 ARG TRP VAL GLY GLY GLN MET GLY VAL VAL PRO THR ALA SEQRES 18 A 303 PRO ASN ASP PRO VAL PHE PHE LEU HIS HIS ALA ASN VAL SEQRES 19 A 303 ASP ARG ILE TRP ALA VAL TRP GLN ILE ILE HIS ARG ASN SEQRES 20 A 303 GLN ASN TYR GLN PRO MET LYS ASN GLY PRO PHE GLY GLN SEQRES 21 A 303 ASN PHE ARG ASP PRO MET TYR PRO TRP ASN THR THR PRO SEQRES 22 A 303 GLU ASP VAL MET ASN HIS ARG LYS LEU GLY TYR VAL TYR SEQRES 23 A 303 ASP ILE GLU LEU ARG LYS SER LYS ARG SER SER HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS SEQRES 1 B 303 MET SER ASN LYS TYR ARG VAL ARG LYS ASN VAL LEU HIS SEQRES 2 B 303 LEU THR ASP THR GLU LYS ARG ASP PHE VAL ARG THR VAL SEQRES 3 B 303 LEU ILE LEU LYS GLU LYS GLY ILE TYR ASP ARG TYR ILE SEQRES 4 B 303 ALA TRP HIS GLY ALA ALA GLY LYS PHE HIS THR PRO PRO SEQRES 5 B 303 GLY SER ASP ARG ASN ALA ALA HIS MET SER SER ALA PHE SEQRES 6 B 303 LEU PRO TRP HIS ARG GLU TYR LEU LEU ARG PHE GLU ARG SEQRES 7 B 303 ASP LEU GLN SER ILE ASN PRO GLU VAL THR LEU PRO TYR SEQRES 8 B 303 TRP GLU TRP GLU THR ASP ALA GLN MET GLN ASP PRO SER SEQRES 9 B 303 GLN SER GLN ILE TRP SER ALA ASP PHE MET GLY GLY ASN SEQRES 10 B 303 GLY ASN PRO ILE LYS ASP PHE ILE VAL ASP THR GLY PRO SEQRES 11 B 303 PHE ALA ALA GLY ARG TRP THR THR ILE ASP GLU GLN GLY SEQRES 12 B 303 ASN PRO SER GLY GLY LEU LYS ARG ASN PHE GLY ALA THR SEQRES 13 B 303 LYS GLU ALA PRO THR LEU PRO THR ARG ASP ASP VAL LEU SEQRES 14 B 303 ASN ALA LEU LYS ILE THR GLN TYR ASP THR PRO PRO TRP SEQRES 15 B 303 ASP MET THR SER GLN ASN SER PHE ARG ASN GLN LEU GLU SEQRES 16 B 303 GLY PHE ILE ASN GLY PRO GLN LEU HIS ASN ARG VAL HIS SEQRES 17 B 303 ARG TRP VAL GLY GLY GLN MET GLY VAL VAL PRO THR ALA SEQRES 18 B 303 PRO ASN ASP PRO VAL PHE PHE LEU HIS HIS ALA ASN VAL SEQRES 19 B 303 ASP ARG ILE TRP ALA VAL TRP GLN ILE ILE HIS ARG ASN SEQRES 20 B 303 GLN ASN TYR GLN PRO MET LYS ASN GLY PRO PHE GLY GLN SEQRES 21 B 303 ASN PHE ARG ASP PRO MET TYR PRO TRP ASN THR THR PRO SEQRES 22 B 303 GLU ASP VAL MET ASN HIS ARG LYS LEU GLY TYR VAL TYR SEQRES 23 B 303 ASP ILE GLU LEU ARG LYS SER LYS ARG SER SER HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS HET CU A 401 1 HET SDS A 402 17 HET CU B 401 1 HETNAM CU COPPER (II) ION HETNAM SDS DODECYL SULFATE FORMUL 3 CU 2(CU 2+) FORMUL 4 SDS C12 H26 O4 S HELIX 1 1 ASN A 10 LEU A 14 5 5 HELIX 2 2 ASP A 16 LYS A 32 1 17 HELIX 3 3 TYR A 35 ALA A 45 1 11 HELIX 4 4 ALA A 64 ASN A 84 1 21 HELIX 5 5 GLU A 93 ALA A 98 1 6 HELIX 6 6 ASN A 119 ASP A 123 5 5 HELIX 7 7 THR A 164 ILE A 174 1 11 HELIX 8 8 SER A 189 GLY A 196 1 8 HELIX 9 9 GLN A 202 GLY A 212 1 11 HELIX 10 10 GLY A 213 VAL A 217 5 5 HELIX 11 11 THR A 220 ASP A 224 5 5 HELIX 12 12 PRO A 225 HIS A 245 1 21 HELIX 13 13 THR A 272 MET A 277 5 6 HELIX 14 14 HIS A 279 LEU A 282 5 4 HELIX 15 15 THR B 17 GLU B 31 1 15 HELIX 16 16 TYR B 35 ALA B 45 1 11 HELIX 17 17 ALA B 64 SER B 82 1 19 HELIX 18 18 GLU B 93 GLN B 99 1 7 HELIX 19 19 ASP B 102 SER B 106 5 5 HELIX 20 20 ASN B 119 ASP B 123 5 5 HELIX 21 21 THR B 164 LEU B 172 1 9 HELIX 22 22 SER B 189 GLY B 196 1 8 HELIX 23 23 GLN B 202 VAL B 211 1 10 HELIX 24 24 GLY B 212 GLY B 216 5 5 HELIX 25 25 THR B 220 PRO B 225 5 6 HELIX 26 26 VAL B 226 HIS B 245 1 20 HELIX 27 27 THR B 272 MET B 277 5 6 SHEET 1 A 2 ARG A 6 ARG A 8 0 SHEET 2 A 2 TYR A 284 TYR A 286 1 O VAL A 285 N ARG A 8 SHEET 1 B 2 THR B 138 ILE B 139 0 SHEET 2 B 2 PRO B 145 GLY B 147 -1 O SER B 146 N THR B 138 LINK NE2 HIS A 69 CU CU A 401 1555 1555 1.84 LINK NE2 HIS B 42 CU CU B 401 1555 1555 2.47 LINK NE2 HIS B 60 CU CU B 401 1555 1555 2.17 CISPEP 1 THR A 50 PRO A 51 0 -0.22 CISPEP 2 PRO A 180 PRO A 181 0 -12.63 CISPEP 3 GLY A 200 PRO A 201 0 12.25 CISPEP 4 GLN A 251 PRO A 252 0 6.25 CISPEP 5 TYR A 267 PRO A 268 0 5.41 CISPEP 6 THR B 50 PRO B 51 0 1.14 CISPEP 7 PRO B 180 PRO B 181 0 -2.27 CISPEP 8 GLY B 200 PRO B 201 0 11.15 CISPEP 9 GLN B 251 PRO B 252 0 8.35 CISPEP 10 TYR B 267 PRO B 268 0 -0.14 SITE 1 AC1 3 HIS A 42 HIS A 60 HIS A 69 SITE 1 AC2 1 ARG A 209 SITE 1 AC3 4 HIS B 42 HIS B 60 HIS B 69 HIS B 231 CRYST1 47.840 79.140 85.930 90.00 103.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020903 0.000000 0.005042 0.00000 SCALE2 0.000000 0.012636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011971 0.00000