PDB Short entry for 4DCK HEADER TRANSPORT PROTEIN/SIGNALING PROTEIN 17-JAN-12 4DCK TITLE CRYSTAL STRUCTURE OF THE C-TERMINUS OF VOLTAGE-GATED SODIUM CHANNEL IN TITLE 2 COMPLEX WITH FGF13 AND CAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM CHANNEL PROTEIN TYPE 5 SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN OF NAV1.5; COMPND 5 SYNONYM: HH1, SODIUM CHANNEL PROTEIN CARDIAC MUSCLE SUBUNIT ALPHA, COMPND 6 SODIUM CHANNEL PROTEIN TYPE V SUBUNIT ALPHA, VOLTAGE-GATED SODIUM COMPND 7 CHANNEL SUBUNIT ALPHA NAV1.5; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CALMODULIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: CALMODULIN; COMPND 13 SYNONYM: CAM; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: FIBROBLAST GROWTH FACTOR 13; COMPND 17 CHAIN: C; COMPND 18 FRAGMENT: FGF13; COMPND 19 SYNONYM: FGF-13, FIBROBLAST GROWTH FACTOR HOMOLOGOUS FACTOR 2, FHF-2; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCN5A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, SOURCE 13 CAM3, CAMC, CAMIII; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 GENE: FGF13, FHF2; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 23 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS IQ-MOTIF, EF-HAND, VOLTAGE-GATED SODIUM CHANNEL REGULATION, NAV1.5 KEYWDS 2 CTD BINDS TO FGF13 AND CAM. CAM BINDS TO CA2+., TRANSPORT PROTEIN- KEYWDS 3 TRANSPORT PROTEIN REGULATOR-SIGNALING PROTEIN COMPLEX, TRANSPORT KEYWDS 4 PROTEIN-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.C.CHUNG,C.WANG,H.YAN,G.S.PITT,S.Y.LEE REVDAT 3 28-FEB-24 4DCK 1 REMARK SEQADV LINK REVDAT 2 25-JUL-12 4DCK 1 JRNL REVDAT 1 27-JUN-12 4DCK 0 JRNL AUTH C.WANG,B.C.CHUNG,H.YAN,S.Y.LEE,G.S.PITT JRNL TITL CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF A NAV C-TERMINAL JRNL TITL 2 DOMAIN, A FIBROBLAST GROWTH FACTOR HOMOLOGOUS FACTOR, AND JRNL TITL 3 CALMODULIN. JRNL REF STRUCTURE V. 20 1167 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22705208 JRNL DOI 10.1016/J.STR.2012.05.001 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1701 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8642 - 5.0339 1.00 2818 150 0.1995 0.2176 REMARK 3 2 5.0339 - 3.9967 1.00 2746 140 0.1724 0.1802 REMARK 3 3 3.9967 - 3.4919 1.00 2705 143 0.1986 0.2066 REMARK 3 4 3.4919 - 3.1727 1.00 2701 143 0.2166 0.2520 REMARK 3 5 3.1727 - 2.9454 1.00 2692 139 0.2352 0.2451 REMARK 3 6 2.9454 - 2.7718 1.00 2679 143 0.2356 0.2410 REMARK 3 7 2.7718 - 2.6330 1.00 2673 138 0.2391 0.2636 REMARK 3 8 2.6330 - 2.5184 1.00 2665 144 0.2410 0.3109 REMARK 3 9 2.5184 - 2.4215 1.00 2693 140 0.2322 0.2558 REMARK 3 10 2.4215 - 2.3379 1.00 2657 140 0.2349 0.2518 REMARK 3 11 2.3379 - 2.2648 1.00 2656 141 0.2455 0.2844 REMARK 3 12 2.2648 - 2.2001 0.99 2641 140 0.2625 0.2638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 43.58 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3563 REMARK 3 ANGLE : 0.823 4798 REMARK 3 CHIRALITY : 0.056 521 REMARK 3 PLANARITY : 0.004 622 REMARK 3 DIHEDRAL : 14.486 1343 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000070158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-11; 22-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 22-ID; 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1; 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI 111; DOUBLE REMARK 200 CRYSTAL, SI 111 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD; ADSC REMARK 200 QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33622 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX 1.7.1_743 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG400, 150MM MAGNESIUM ACETATE, REMARK 280 50MM SODIUM CACODYLATE , PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.02050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.02050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.02050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.02050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.02050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.02050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 63.02050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 63.02050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 63.02050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 63.02050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 63.02050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 63.02050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 63.02050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 63.02050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 63.02050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 63.02050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 63.02050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 63.02050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE C-TERMINUS OF VOLTAGE-GATED SODIUM CHANNEL IS A MONOMER REMARK 300 AND IN COMPLEX WITH FGF13 AND CAM. SO IT IS HETEROTRIMER (TERNARY REMARK 300 COMPLEX). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -63.02050 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 -63.02050 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 63.02050 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 -63.02050 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 362 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1773 REMARK 465 ASN A 1774 REMARK 465 PHE A 1775 REMARK 465 ARG A 1929 REMARK 465 GLN A 1930 REMARK 465 GLN A 1931 REMARK 465 ALA A 1932 REMARK 465 GLY A 1933 REMARK 465 SER A 1934 REMARK 465 GLY A 1935 REMARK 465 LEU A 1936 REMARK 465 SER A 1937 REMARK 465 GLU A 1938 REMARK 465 GLU A 1939 REMARK 465 ASP A 1940 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 GLN B 4 REMARK 465 LYS B 22 REMARK 465 ASP B 23 REMARK 465 GLY B 24 REMARK 465 ASP B 25 REMARK 465 GLY B 26 REMARK 465 THR B 27 REMARK 465 ASP B 57 REMARK 465 ALA B 58 REMARK 465 ASP B 59 REMARK 465 GLY B 60 REMARK 465 ASN B 61 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 LEU C 3 REMARK 465 LEU C 4 REMARK 465 ARG C 5 REMARK 465 LYS C 6 REMARK 465 SER C 7 REMARK 465 TYR C 8 REMARK 465 SER C 9 REMARK 465 GLU C 10 REMARK 465 LEU C 159 REMARK 465 THR C 160 REMARK 465 GLU C 161 REMARK 465 PHE C 162 REMARK 465 SER C 163 REMARK 465 ARG C 164 REMARK 465 SER C 165 REMARK 465 GLY C 166 REMARK 465 SER C 167 REMARK 465 GLY C 168 REMARK 465 THR C 169 REMARK 465 PRO C 170 REMARK 465 THR C 171 REMARK 465 LYS C 172 REMARK 465 SER C 173 REMARK 465 ARG C 174 REMARK 465 SER C 175 REMARK 465 VAL C 176 REMARK 465 SER C 177 REMARK 465 GLY C 178 REMARK 465 VAL C 179 REMARK 465 LEU C 180 REMARK 465 ASN C 181 REMARK 465 GLY C 182 REMARK 465 GLY C 183 REMARK 465 LYS C 184 REMARK 465 SER C 185 REMARK 465 MET C 186 REMARK 465 SER C 187 REMARK 465 HIS C 188 REMARK 465 ASN C 189 REMARK 465 GLU C 190 REMARK 465 SER C 191 REMARK 465 THR C 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 28 CG1 CG2 CD1 REMARK 470 THR B 29 OG1 CG2 REMARK 470 THR B 30 OG1 CG2 REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 THR B 63 OG1 CG2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 79 OE1 GLU C 87 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A1807 3.08 85.51 REMARK 500 GLU B 55 1.29 -61.28 REMARK 500 PHE B 66 -71.63 -47.95 REMARK 500 THR C 47 2.48 -55.60 REMARK 500 GLN C 111 -51.69 72.43 REMARK 500 HIS C 157 -166.21 -114.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 94 OD1 REMARK 620 2 ASP B 96 OD1 68.3 REMARK 620 3 ASP B 96 OD2 123.4 55.3 REMARK 620 4 ASN B 98 OD1 80.2 82.5 95.7 REMARK 620 5 TYR B 100 O 78.5 146.7 158.1 89.3 REMARK 620 6 HOH B 306 O 91.0 99.9 94.1 169.4 83.1 REMARK 620 7 HOH B 339 O 170.7 118.0 63.8 93.5 94.6 94.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 130 OD1 REMARK 620 2 ASP B 132 OD1 82.0 REMARK 620 3 ASP B 134 OD1 85.4 89.7 REMARK 620 4 GLN B 136 O 83.4 165.4 90.6 REMARK 620 5 HOH B 304 O 96.1 89.7 178.3 90.3 REMARK 620 6 HOH B 309 O 164.7 109.7 85.0 84.9 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 132 OD2 REMARK 620 2 HOH B 301 O 91.7 REMARK 620 3 HOH B 303 O 85.4 77.5 REMARK 620 4 HOH B 311 O 103.2 90.6 165.6 REMARK 620 5 HOH B 358 O 104.7 160.5 93.1 95.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 203 DBREF 4DCK A 1773 1940 UNP Q14524 SCN5A_HUMAN 1773 1940 DBREF 4DCK B 1 149 UNP P62158 CALM_HUMAN 1 149 DBREF 4DCK C 10 192 UNP Q92913 FGF13_HUMAN 63 245 SEQADV 4DCK MET C 1 UNP Q92913 EXPRESSION TAG SEQADV 4DCK ALA C 2 UNP Q92913 EXPRESSION TAG SEQADV 4DCK LEU C 3 UNP Q92913 EXPRESSION TAG SEQADV 4DCK LEU C 4 UNP Q92913 EXPRESSION TAG SEQADV 4DCK ARG C 5 UNP Q92913 EXPRESSION TAG SEQADV 4DCK LYS C 6 UNP Q92913 EXPRESSION TAG SEQADV 4DCK SER C 7 UNP Q92913 EXPRESSION TAG SEQADV 4DCK TYR C 8 UNP Q92913 EXPRESSION TAG SEQADV 4DCK SER C 9 UNP Q92913 EXPRESSION TAG SEQRES 1 A 168 GLU ASN PHE SER VAL ALA THR GLU GLU SER THR GLU PRO SEQRES 2 A 168 LEU SER GLU ASP ASP PHE ASP MET PHE TYR GLU ILE TRP SEQRES 3 A 168 GLU LYS PHE ASP PRO GLU ALA THR GLN PHE ILE GLU TYR SEQRES 4 A 168 SER VAL LEU SER ASP PHE ALA ASP ALA LEU SER GLU PRO SEQRES 5 A 168 LEU ARG ILE ALA LYS PRO ASN GLN ILE SER LEU ILE ASN SEQRES 6 A 168 MET ASP LEU PRO MET VAL SER GLY ASP ARG ILE HIS CYS SEQRES 7 A 168 MET ASP ILE LEU PHE ALA PHE THR LYS ARG VAL LEU GLY SEQRES 8 A 168 GLU SER GLY GLU MET ASP ALA LEU LYS ILE GLN MET GLU SEQRES 9 A 168 GLU LYS PHE MET ALA ALA ASN PRO SER LYS ILE SER TYR SEQRES 10 A 168 GLU PRO ILE THR THR THR LEU ARG ARG LYS HIS GLU GLU SEQRES 11 A 168 VAL SER ALA MET VAL ILE GLN ARG ALA PHE ARG ARG HIS SEQRES 12 A 168 LEU LEU GLN ARG SER LEU LYS HIS ALA SER PHE LEU PHE SEQRES 13 A 168 ARG GLN GLN ALA GLY SER GLY LEU SER GLU GLU ASP SEQRES 1 B 149 MET ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE SEQRES 2 B 149 LYS GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY SEQRES 3 B 149 THR ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER SEQRES 4 B 149 LEU GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET SEQRES 5 B 149 ILE ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP SEQRES 6 B 149 PHE PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS SEQRES 7 B 149 ASP THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG SEQRES 8 B 149 VAL PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA SEQRES 9 B 149 GLU LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU SEQRES 10 B 149 THR ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP SEQRES 11 B 149 ILE ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL SEQRES 12 B 149 GLN MET MET THR ALA LYS SEQRES 1 C 192 MET ALA LEU LEU ARG LYS SER TYR SER GLU PRO GLN LEU SEQRES 2 C 192 LYS GLY ILE VAL THR LYS LEU TYR SER ARG GLN GLY TYR SEQRES 3 C 192 HIS LEU GLN LEU GLN ALA ASP GLY THR ILE ASP GLY THR SEQRES 4 C 192 LYS ASP GLU ASP SER THR TYR THR LEU PHE ASN LEU ILE SEQRES 5 C 192 PRO VAL GLY LEU ARG VAL VAL ALA ILE GLN GLY VAL GLN SEQRES 6 C 192 THR LYS LEU TYR LEU ALA MET ASN SER GLU GLY TYR LEU SEQRES 7 C 192 TYR THR SER GLU LEU PHE THR PRO GLU CYS LYS PHE LYS SEQRES 8 C 192 GLU SER VAL PHE GLU ASN TYR TYR VAL THR TYR SER SER SEQRES 9 C 192 MET ILE TYR ARG GLN GLN GLN SER GLY ARG GLY TRP TYR SEQRES 10 C 192 LEU GLY LEU ASN LYS GLU GLY GLU ILE MET LYS GLY ASN SEQRES 11 C 192 HIS VAL LYS LYS ASN LYS PRO ALA ALA HIS PHE LEU PRO SEQRES 12 C 192 LYS PRO LEU LYS VAL ALA MET TYR LYS GLU PRO SER LEU SEQRES 13 C 192 HIS ASP LEU THR GLU PHE SER ARG SER GLY SER GLY THR SEQRES 14 C 192 PRO THR LYS SER ARG SER VAL SER GLY VAL LEU ASN GLY SEQRES 15 C 192 GLY LYS SER MET SER HIS ASN GLU SER THR HET MG B 201 1 HET MG B 202 1 HET MG B 203 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *202(H2 O) HELIX 1 1 SER A 1787 ASP A 1802 1 16 HELIX 2 2 VAL A 1813 LEU A 1821 1 9 HELIX 3 3 ASN A 1831 MET A 1838 1 8 HELIX 4 4 CYS A 1850 GLY A 1863 1 14 HELIX 5 5 SER A 1865 ASN A 1883 1 19 HELIX 6 6 SER A 1885 TYR A 1889 5 5 HELIX 7 7 LEU A 1896 LEU A 1927 1 32 HELIX 8 8 THR B 6 LEU B 19 1 14 HELIX 9 9 THR B 29 LEU B 40 1 12 HELIX 10 10 THR B 45 GLU B 55 1 11 HELIX 11 11 ASP B 65 ASP B 94 1 30 HELIX 12 12 ALA B 103 LEU B 113 1 11 HELIX 13 13 THR B 118 ASP B 130 1 13 HELIX 14 14 TYR B 139 LYS B 149 1 11 HELIX 15 15 THR C 85 CYS C 88 5 4 HELIX 16 16 LYS C 128 VAL C 132 5 5 HELIX 17 17 LYS C 136 ALA C 139 5 4 SHEET 1 A 2 PHE A1808 GLU A1810 0 SHEET 2 A 2 ARG A1847 HIS A1849 -1 O ILE A1848 N ILE A1809 SHEET 1 B 2 PRO A1841 MET A1842 0 SHEET 2 B 2 THR A1894 THR A1895 -1 O THR A1894 N MET A1842 SHEET 1 C 2 TYR B 100 SER B 102 0 SHEET 2 C 2 GLN B 136 ASN B 138 -1 O VAL B 137 N ILE B 101 SHEET 1 D 8 ILE C 36 THR C 39 0 SHEET 2 D 8 TYR C 26 LEU C 30 -1 N HIS C 27 O THR C 39 SHEET 3 D 8 LEU C 13 SER C 22 -1 N SER C 22 O TYR C 26 SHEET 4 D 8 PHE C 49 GLY C 55 -1 O LEU C 51 N ILE C 16 SHEET 5 D 8 VAL C 58 GLY C 63 -1 O GLN C 62 N ASN C 50 SHEET 6 D 8 PHE C 90 PHE C 95 -1 O PHE C 90 N VAL C 59 SHEET 7 D 8 TYR C 99 ARG C 108 -1 O THR C 101 N SER C 93 SHEET 8 D 8 GLY C 115 TYR C 117 -1 O TRP C 116 N SER C 104 SHEET 1 E 6 ILE C 36 THR C 39 0 SHEET 2 E 6 TYR C 26 LEU C 30 -1 N HIS C 27 O THR C 39 SHEET 3 E 6 LEU C 13 SER C 22 -1 N SER C 22 O TYR C 26 SHEET 4 E 6 PHE C 141 TYR C 151 -1 O LEU C 146 N VAL C 17 SHEET 5 E 6 TYR C 99 ARG C 108 -1 N VAL C 100 O PHE C 141 SHEET 6 E 6 GLY C 115 TYR C 117 -1 O TRP C 116 N SER C 104 SHEET 1 F 2 TYR C 69 MET C 72 0 SHEET 2 F 2 LEU C 78 SER C 81 -1 O TYR C 79 N ALA C 71 LINK OD1 ASP B 94 MG MG B 203 1555 1555 2.19 LINK OD1 ASP B 96 MG MG B 203 1555 1555 2.03 LINK OD2 ASP B 96 MG MG B 203 1555 1555 2.56 LINK OD1 ASN B 98 MG MG B 203 1555 1555 2.08 LINK O TYR B 100 MG MG B 203 1555 1555 2.20 LINK OD1 ASP B 130 MG MG B 201 1555 1555 2.04 LINK OD1 ASP B 132 MG MG B 201 1555 1555 2.05 LINK OD2 ASP B 132 MG MG B 202 1555 1555 2.04 LINK OD1 ASP B 134 MG MG B 201 1555 1555 2.06 LINK O GLN B 136 MG MG B 201 1555 1555 2.24 LINK MG MG B 201 O HOH B 304 1555 1555 2.30 LINK MG MG B 201 O HOH B 309 1555 1555 2.40 LINK MG MG B 202 O HOH B 301 1555 1555 2.57 LINK MG MG B 202 O HOH B 303 1555 1555 2.39 LINK MG MG B 202 O HOH B 311 1555 1555 2.38 LINK MG MG B 202 O HOH B 358 1555 1555 1.82 LINK MG MG B 203 O HOH B 306 1555 1555 2.39 LINK MG MG B 203 O HOH B 339 1555 1555 2.38 CISPEP 1 GLU A 1823 PRO A 1824 0 2.22 CISPEP 2 LYS A 1829 PRO A 1830 0 -3.48 CISPEP 3 SER A 1844 GLY A 1845 0 -8.29 SITE 1 AC1 6 ASP B 130 ASP B 132 ASP B 134 GLN B 136 SITE 2 AC1 6 HOH B 304 HOH B 309 SITE 1 AC2 6 ASP B 81 ASP B 132 HOH B 301 HOH B 303 SITE 2 AC2 6 HOH B 311 HOH B 358 SITE 1 AC3 6 ASP B 94 ASP B 96 ASN B 98 TYR B 100 SITE 2 AC3 6 HOH B 306 HOH B 339 CRYST1 126.041 126.041 126.041 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007934 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007934 0.00000