PDB Short entry for 4DEQ
HEADER    PROTEIN BINDING/CYTOKINE                21-JAN-12   4DEQ              
TITLE     STRUCTURE OF THE NEUROPILIN-1/VEGF-A COMPLEX                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NEUROPILIN-1, VASCULAR ENDOTHELIAL GROWTH FACTOR A;        
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 FRAGMENT: NEUROPILIN B1 DOMAIN/VEGF-A HEPARIN BINDING DOMAIN;        
COMPND   5 SYNONYM: VASCULAR ENDOTHELIAL CELL GROWTH FACTOR 165 RECEPTOR, VEGF- 
COMPND   6 A, VASCULAR PERMEABILITY FACTOR, VPF;                                
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: NRP1, NRP, VEGF165R, VEGF, VEGFA;                              
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    COAGULATION FACTOR DOMAIN, HEPARIN BINDING DOMAIN, ANGIOGENESIS,      
KEYWDS   2 PROTEIN BINDING-CYTOKINE COMPLEX                                     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    C.W.VANDER KOOI                                                       
REVDAT   4   02-AUG-17 4DEQ    1       SOURCE REMARK                            
REVDAT   3   18-JUL-12 4DEQ    1       JRNL                                     
REVDAT   2   29-FEB-12 4DEQ    1       JRNL                                     
REVDAT   1   08-FEB-12 4DEQ    0                                                
JRNL        AUTH   M.W.PARKER,P.XU,X.LI,C.W.VANDER KOOI                         
JRNL        TITL   STRUCTURAL BASIS FOR SELECTIVE VASCULAR ENDOTHELIAL GROWTH   
JRNL        TITL 2 FACTOR-A (VEGF-A) BINDING TO NEUROPILIN-1.                   
JRNL        REF    J.BIOL.CHEM.                  V. 287 11082 2012              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   22318724                                                     
JRNL        DOI    10.1074/JBC.M111.331140                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.65 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.6.0117                                      
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                               
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 19.90                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 91.2                           
REMARK   3   NUMBER OF REFLECTIONS             : 17074                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.212                           
REMARK   3   R VALUE            (WORKING SET) : 0.209                           
REMARK   3   FREE R VALUE                     : 0.267                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 916                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.65                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.72                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 667                          
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 51.41                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.4360                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 43                           
REMARK   3   BIN FREE R VALUE                    : 0.4980                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3424                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 5                                       
REMARK   3   SOLVENT ATOMS            : 16                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 78.23                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.11000                                              
REMARK   3    B22 (A**2) : 0.11000                                              
REMARK   3    B33 (A**2) : -0.22000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.594         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.333         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.251         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.465        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.946                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.916                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3510 ; 0.005 ; 0.020       
REMARK   3   BOND LENGTHS OTHERS               (A):  2501 ; 0.001 ; 0.020       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4747 ; 1.011 ; 1.953       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  6043 ; 0.724 ; 3.006       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   430 ; 5.906 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   159 ;33.431 ;23.522       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   628 ;13.144 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    30 ;12.111 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   504 ; 0.057 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  3876 ; 0.003 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):   722 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 4                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A     0        A   155                          
REMARK   3    ORIGIN FOR THE GROUP (A):   6.8535  21.4271  -7.9612              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1784 T22:   0.1604                                     
REMARK   3      T33:   0.0657 T12:  -0.0433                                     
REMARK   3      T13:  -0.0143 T23:   0.0141                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   4.5847 L22:   4.5733                                     
REMARK   3      L33:   2.0082 L12:  -1.4475                                     
REMARK   3      L13:   1.1556 L23:   0.5975                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0885 S12:   0.1638 S13:   0.5113                       
REMARK   3      S21:  -0.1230 S22:  -0.1152 S23:  -0.2578                       
REMARK   3      S31:  -0.1718 S32:  -0.0163 S33:   0.2037                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   B     0        B   155                          
REMARK   3    ORIGIN FOR THE GROUP (A):  29.3310  44.2408   6.9105              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.1120 T22:   0.0578                                     
REMARK   3      T33:   0.0752 T12:   0.0602                                     
REMARK   3      T13:  -0.0458 T23:  -0.0278                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   6.3675 L22:   4.2949                                     
REMARK   3      L33:   2.7831 L12:  -1.7281                                     
REMARK   3      L13:   0.1628 L23:   0.7806                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.1463 S12:  -0.1269 S13:   0.0811                       
REMARK   3      S21:   0.1656 S22:   0.1371 S23:  -0.4794                       
REMARK   3      S31:   0.0008 S32:   0.2226 S33:   0.0091                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   156        A   214                          
REMARK   3    ORIGIN FOR THE GROUP (A):  39.2458  20.4311  -5.9145              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.3776 T22:   0.4395                                     
REMARK   3      T33:   0.4158 T12:   0.0722                                     
REMARK   3      T13:   0.1692 T23:  -0.0554                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:  15.3780 L22:   3.9871                                     
REMARK   3      L33:   2.4969 L12:   7.7211                                     
REMARK   3      L13:   4.4914 L23:   2.4055                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.3602 S12:   0.8682 S13:  -0.6862                       
REMARK   3      S21:  -0.3328 S22:   0.4676 S23:  -0.4582                       
REMARK   3      S31:  -0.0487 S32:   0.1717 S33:  -0.1075                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 4                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   B   156        B   214                          
REMARK   3    ORIGIN FOR THE GROUP (A):   5.2881  62.5084 -11.9045              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.3241 T22:   0.2875                                     
REMARK   3      T33:   0.3406 T12:   0.0593                                     
REMARK   3      T13:   0.0231 T23:   0.0612                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   2.5280 L22:   4.3236                                     
REMARK   3      L33:   7.4026 L12:  -3.1591                                     
REMARK   3      L13:   4.2588 L23:  -5.1787                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0728 S12:   0.0040 S13:   0.2370                       
REMARK   3      S21:   0.2239 S22:  -0.0937 S23:  -0.3527                       
REMARK   3      S31:  -0.1410 S32:   0.0064 S33:   0.1665                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 4DEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-12.                  
REMARK 100 THE DEPOSITION ID IS D_1000070236.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 21-MAR-11                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 22-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0000                             
REMARK 200  MONOCHROMATOR                  : SI (111)                           
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARMOSAIC 300 MM CCD               
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 18014                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.649                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : -3.000                             
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 91.5                               
REMARK 200  DATA REDUNDANCY                : NULL                               
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : NULL                               
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: PDB ENTRY 2QQI                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 63.97                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M NA/K PHOSPHATE, PH 6.5, VAPOR       
REMARK 280  DIFFUSION, HANGING DROP, TEMPERATURE 298K                           
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43                             
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y,X,Z+3/4                                              
REMARK 290       4555   Y,-X,Z+1/4                                              
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       25.47300            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       38.20950            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       12.73650            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2, 3                                                 
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 3                                                       
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A    -3                                                      
REMARK 465     GLY B    -3                                                      
REMARK 465     SER B    -2                                                      
REMARK 465     HIS B    -1                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    SER A  25     -172.77   -170.54                                   
REMARK 500    ASN A  40     -164.55     59.31                                   
REMARK 500    ASN A 103       40.88   -140.80                                   
REMARK 500    THR A 140      -58.60     67.20                                   
REMARK 500    ASP A 158     -157.37     71.99                                   
REMARK 500    LYS A 174      -71.12     60.78                                   
REMARK 500    ASN B  40     -158.01     60.64                                   
REMARK 500    THR B 140      -46.52     63.03                                   
REMARK 500    ASP B 158     -141.92     75.30                                   
REMARK 500    ARG B 173      104.15   -160.68                                   
REMARK 500    CYS B 184       16.92     58.41                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 301                 
DBREF  4DEQ A    1   156  UNP    O14786   NRP1_HUMAN     274    429             
DBREF  4DEQ A  165   214  UNP    P15692   VEGFA_HUMAN    183    232             
DBREF  4DEQ B    1   156  UNP    O14786   NRP1_HUMAN     274    429             
DBREF  4DEQ B  165   214  UNP    P15692   VEGFA_HUMAN    183    232             
SEQADV 4DEQ GLY A   -3  UNP  O14786              EXPRESSION TAG                 
SEQADV 4DEQ SER A   -2  UNP  O14786              EXPRESSION TAG                 
SEQADV 4DEQ HIS A   -1  UNP  O14786              EXPRESSION TAG                 
SEQADV 4DEQ MET A    0  UNP  O14786              EXPRESSION TAG                 
SEQADV 4DEQ VAL A  157  UNP  O14786              LINKER                         
SEQADV 4DEQ ASP A  158  UNP  O14786              LINKER                         
SEQADV 4DEQ GLY A  159  UNP  O14786              LINKER                         
SEQADV 4DEQ SER A  160  UNP  O14786              LINKER                         
SEQADV 4DEQ GLY A  161  UNP  O14786              LINKER                         
SEQADV 4DEQ SER A  162  UNP  O14786              LINKER                         
SEQADV 4DEQ GLY A  163  UNP  O14786              LINKER                         
SEQADV 4DEQ SER A  164  UNP  O14786              LINKER                         
SEQADV 4DEQ GLY B   -3  UNP  O14786              EXPRESSION TAG                 
SEQADV 4DEQ SER B   -2  UNP  O14786              EXPRESSION TAG                 
SEQADV 4DEQ HIS B   -1  UNP  O14786              EXPRESSION TAG                 
SEQADV 4DEQ MET B    0  UNP  O14786              EXPRESSION TAG                 
SEQADV 4DEQ VAL B  157  UNP  O14786              LINKER                         
SEQADV 4DEQ ASP B  158  UNP  O14786              LINKER                         
SEQADV 4DEQ GLY B  159  UNP  O14786              LINKER                         
SEQADV 4DEQ SER B  160  UNP  O14786              LINKER                         
SEQADV 4DEQ GLY B  161  UNP  O14786              LINKER                         
SEQADV 4DEQ SER B  162  UNP  O14786              LINKER                         
SEQADV 4DEQ GLY B  163  UNP  O14786              LINKER                         
SEQADV 4DEQ SER B  164  UNP  O14786              LINKER                         
SEQRES   1 A  218  GLY SER HIS MET LYS CYS MET GLU ALA LEU GLY MET GLU          
SEQRES   2 A  218  SER GLY GLU ILE HIS SER ASP GLN ILE THR ALA SER SER          
SEQRES   3 A  218  GLN TYR SER THR ASN TRP SER ALA GLU ARG SER ARG LEU          
SEQRES   4 A  218  ASN TYR PRO GLU ASN GLY TRP THR PRO GLY GLU ASP SER          
SEQRES   5 A  218  TYR ARG GLU TRP ILE GLN VAL ASP LEU GLY LEU LEU ARG          
SEQRES   6 A  218  PHE VAL THR ALA VAL GLY THR GLN GLY ALA ILE SER LYS          
SEQRES   7 A  218  GLU THR LYS LYS LYS TYR TYR VAL LYS THR TYR LYS ILE          
SEQRES   8 A  218  ASP VAL SER SER ASN GLY GLU ASP TRP ILE THR ILE LYS          
SEQRES   9 A  218  GLU GLY ASN LYS PRO VAL LEU PHE GLN GLY ASN THR ASN          
SEQRES  10 A  218  PRO THR ASP VAL VAL VAL ALA VAL PHE PRO LYS PRO LEU          
SEQRES  11 A  218  ILE THR ARG PHE VAL ARG ILE LYS PRO ALA THR TRP GLU          
SEQRES  12 A  218  THR GLY ILE SER MET ARG PHE GLU VAL TYR GLY CYS LYS          
SEQRES  13 A  218  ILE THR ASP TYR VAL ASP GLY SER GLY SER GLY SER PRO          
SEQRES  14 A  218  CYS GLY PRO CYS SER GLU ARG ARG LYS HIS LEU PHE VAL          
SEQRES  15 A  218  GLN ASP PRO GLN THR CYS LYS CYS SER CYS LYS ASN THR          
SEQRES  16 A  218  ASP SER ARG CYS LYS ALA ARG GLN LEU GLU LEU ASN GLU          
SEQRES  17 A  218  ARG THR CYS ARG CYS ASP LYS PRO ARG ARG                      
SEQRES   1 B  218  GLY SER HIS MET LYS CYS MET GLU ALA LEU GLY MET GLU          
SEQRES   2 B  218  SER GLY GLU ILE HIS SER ASP GLN ILE THR ALA SER SER          
SEQRES   3 B  218  GLN TYR SER THR ASN TRP SER ALA GLU ARG SER ARG LEU          
SEQRES   4 B  218  ASN TYR PRO GLU ASN GLY TRP THR PRO GLY GLU ASP SER          
SEQRES   5 B  218  TYR ARG GLU TRP ILE GLN VAL ASP LEU GLY LEU LEU ARG          
SEQRES   6 B  218  PHE VAL THR ALA VAL GLY THR GLN GLY ALA ILE SER LYS          
SEQRES   7 B  218  GLU THR LYS LYS LYS TYR TYR VAL LYS THR TYR LYS ILE          
SEQRES   8 B  218  ASP VAL SER SER ASN GLY GLU ASP TRP ILE THR ILE LYS          
SEQRES   9 B  218  GLU GLY ASN LYS PRO VAL LEU PHE GLN GLY ASN THR ASN          
SEQRES  10 B  218  PRO THR ASP VAL VAL VAL ALA VAL PHE PRO LYS PRO LEU          
SEQRES  11 B  218  ILE THR ARG PHE VAL ARG ILE LYS PRO ALA THR TRP GLU          
SEQRES  12 B  218  THR GLY ILE SER MET ARG PHE GLU VAL TYR GLY CYS LYS          
SEQRES  13 B  218  ILE THR ASP TYR VAL ASP GLY SER GLY SER GLY SER PRO          
SEQRES  14 B  218  CYS GLY PRO CYS SER GLU ARG ARG LYS HIS LEU PHE VAL          
SEQRES  15 B  218  GLN ASP PRO GLN THR CYS LYS CYS SER CYS LYS ASN THR          
SEQRES  16 B  218  ASP SER ARG CYS LYS ALA ARG GLN LEU GLU LEU ASN GLU          
SEQRES  17 B  218  ARG THR CYS ARG CYS ASP LYS PRO ARG ARG                      
HET    PO4  B 301       5                                                       
HETNAM     PO4 PHOSPHATE ION                                                    
FORMUL   3  PO4    O4 P 3-                                                      
FORMUL   4  HOH   *16(H2 O)                                                     
HELIX    1   1 HIS A   14  ASP A   16  5                                   3    
HELIX    2   2 SER A   25  SER A   33  5                                   9    
HELIX    3   3 THR A  191  ALA A  197  1                                   7    
HELIX    4   4 HIS B   14  ASP B   16  5                                   3    
HELIX    5   5 SER B   25  ARG B   34  5                                  10    
HELIX    6   6 ARG B  173  HIS B  175  5                                   3    
HELIX    7   7 THR B  191  ARG B  198  1                                   8    
SHEET    1   A 3 ALA A  71  ILE A  72  0                                        
SHEET    2   A 3 LYS A  79  SER A  90 -1  O  TYR A  80   N  ALA A  71           
SHEET    3   A 3 PHE A 108  GLN A 109 -1  O  PHE A 108   N  TYR A  85           
SHEET    1   B 6 GLU A   4  ALA A   5  0                                        
SHEET    2   B 6 ARG A 145  CYS A 151 -1  O  GLY A 150   N  GLU A   4           
SHEET    3   B 6 ILE A  53  GLN A  69 -1  N  ALA A  65   O  TYR A 149           
SHEET    4   B 6 VAL A 118  GLU A 139 -1  O  ALA A 120   N  VAL A  66           
SHEET    5   B 6 LYS A  79  SER A  90 -1  N  SER A  90   O  PHE A 130           
SHEET    6   B 6 ILE A  97  THR A  98 -1  O  ILE A  97   N  VAL A  89           
SHEET    1   C 5 ILE A  18  ALA A  20  0                                        
SHEET    2   C 5 ILE A  53  GLN A  69 -1  O  GLN A  54   N  THR A  19           
SHEET    3   C 5 VAL A 118  GLU A 139 -1  O  ALA A 120   N  VAL A  66           
SHEET    4   C 5 LYS A  79  SER A  90 -1  N  SER A  90   O  PHE A 130           
SHEET    5   C 5 PHE A 108  GLN A 109 -1  O  PHE A 108   N  TYR A  85           
SHEET    1   D 2 LYS A 100  GLU A 101  0                                        
SHEET    2   D 2 LYS A 104  PRO A 105 -1  O  LYS A 104   N  GLU A 101           
SHEET    1   E 2 PHE A 177  GLN A 179  0                                        
SHEET    2   E 2 CYS A 186  CYS A 188 -1  O  SER A 187   N  VAL A 178           
SHEET    1   F 2 LEU A 200  GLU A 201  0                                        
SHEET    2   F 2 LYS A 211  PRO A 212 -1  O  LYS A 211   N  GLU A 201           
SHEET    1   G 3 ALA B  71  ILE B  72  0                                        
SHEET    2   G 3 LYS B  79  SER B  90 -1  O  TYR B  80   N  ALA B  71           
SHEET    3   G 3 PHE B 108  GLN B 109 -1  O  PHE B 108   N  TYR B  85           
SHEET    1   H 6 GLU B   4  ALA B   5  0                                        
SHEET    2   H 6 ARG B 145  CYS B 151 -1  O  GLY B 150   N  GLU B   4           
SHEET    3   H 6 ILE B  53  GLN B  69 -1  N  ALA B  65   O  TYR B 149           
SHEET    4   H 6 VAL B 118  GLU B 139 -1  O  PHE B 122   N  THR B  64           
SHEET    5   H 6 LYS B  79  SER B  90 -1  N  SER B  90   O  PHE B 130           
SHEET    6   H 6 ILE B  97  THR B  98 -1  O  ILE B  97   N  VAL B  89           
SHEET    1   I 5 ILE B  18  ALA B  20  0                                        
SHEET    2   I 5 ILE B  53  GLN B  69 -1  O  GLN B  54   N  THR B  19           
SHEET    3   I 5 VAL B 118  GLU B 139 -1  O  PHE B 122   N  THR B  64           
SHEET    4   I 5 LYS B  79  SER B  90 -1  N  SER B  90   O  PHE B 130           
SHEET    5   I 5 PHE B 108  GLN B 109 -1  O  PHE B 108   N  TYR B  85           
SHEET    1   J 2 LYS B 100  GLU B 101  0                                        
SHEET    2   J 2 LYS B 104  PRO B 105 -1  O  LYS B 104   N  GLU B 101           
SHEET    1   K 2 PHE B 177  GLN B 179  0                                        
SHEET    2   K 2 CYS B 186  CYS B 188 -1  O  SER B 187   N  VAL B 178           
SHEET    1   L 2 GLU B 201  ASN B 203  0                                        
SHEET    2   L 2 ARG B 208  ASP B 210 -1  O  ASP B 210   N  GLU B 201           
SSBOND   1 CYS A    2    CYS A  151                          1555   1555  2.05  
SSBOND   2 CYS A  166    CYS A  184                          1555   1555  2.03  
SSBOND   3 CYS A  169    CYS A  186                          1555   1555  2.04  
SSBOND   4 CYS A  195    CYS A  209                          1555   1555  2.04  
SSBOND   5 CYS B    2    CYS B  151                          1555   1555  2.04  
SSBOND   6 CYS B  166    CYS B  184                          1555   1555  2.04  
SSBOND   7 CYS B  169    CYS B  186                          1555   1555  2.04  
SSBOND   8 CYS B  188    CYS B  207                          1555   1555  2.04  
SSBOND   9 CYS B  195    CYS B  209                          1555   1555  2.03  
SITE     1 AC1  5 ASN B 190  ARG B 198  ARG B 208  CYS B 209                    
SITE     2 AC1  5 HOH B 401                                                     
CRYST1  114.978  114.978   50.946  90.00  90.00  90.00 P 43          8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.008697  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.008697  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.019629        0.00000