PDB Short entry for 4DJC HEADER CALCIUM-BINDING PROTEIN 01-FEB-12 4DJC TITLE 1.35 A CRYSTAL STRUCTURE OF THE NAV1.5 DIII-IV-CA/CAM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SODIUM CHANNEL PROTEIN TYPE 5 SUBUNIT ALPHA; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: HH1, SODIUM CHANNEL PROTEIN CARDIAC MUSCLE SUBUNIT ALPHA, COMPND 10 SODIUM CHANNEL PROTEIN TYPE V SUBUNIT ALPHA, VOLTAGE-GATED SODIUM COMPND 11 CHANNEL SUBUNIT ALPHA NAV1.5; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1, CALM2, CAM2, CAMB, CALM3, CALML2, SOURCE 6 CAM3, CAMC, CAMIII; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: SCN5A; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EF-HAND, CALCIUM-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.F.SARHAN,C.-C.TUNG,F.VAN PETEGEM,C.A.AHERN REVDAT 4 28-FEB-24 4DJC 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4DJC 1 AUTHOR REVDAT 2 21-MAR-12 4DJC 1 JRNL REVDAT 1 22-FEB-12 4DJC 0 JRNL AUTH M.F.SARHAN,C.C.TUNG,F.VAN PETEGEM,C.A.AHERN JRNL TITL CRYSTALLOGRAPHIC BASIS FOR CALCIUM REGULATION OF SODIUM JRNL TITL 2 CHANNELS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 3558 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22331908 JRNL DOI 10.1073/PNAS.1114748109 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42422 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2234 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2834 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.67000 REMARK 3 B22 (A**2) : 2.25000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1402 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 923 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1901 ; 1.620 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2288 ; 1.097 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 193 ; 4.532 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;30.039 ;26.806 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 261 ;11.330 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 9.713 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 212 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1597 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 256 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 863 ; 1.960 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 353 ; 1.271 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1392 ; 2.925 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 539 ; 4.244 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 495 ; 6.280 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2325 ; 1.997 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 165 ;10.290 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2305 ; 7.621 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9749 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 60% ISOPROPANOL, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.50500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.50500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 SER B 1488 REMARK 465 GLY B 1502 REMARK 465 SER B 1503 REMARK 465 LYS B 1504 REMARK 465 LYS B 1505 REMARK 465 PRO B 1506 REMARK 465 GLN B 1507 REMARK 465 LYS B 1508 REMARK 465 PRO B 1509 REMARK 465 ILE B 1510 REMARK 465 PRO B 1511 REMARK 465 ARG B 1512 REMARK 465 PRO B 1513 REMARK 465 LEU B 1514 REMARK 465 ASN B 1515 REMARK 465 LYS B 1516 REMARK 465 TYR B 1517 REMARK 465 GLN B 1518 REMARK 465 GLY B 1519 REMARK 465 PHE B 1520 REMARK 465 ILE B 1521 REMARK 465 PHE B 1522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A -1 CG OD1 ND2 REMARK 470 MET A 1 CG SD CE REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 THR A 6 OG1 CG2 REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 149 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 418 O HOH A 450 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP A 59 O HOH A 418 4445 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 140 CG GLU A 140 CD 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 127 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 ASP A 23 OD1 77.9 REMARK 620 3 ASP A 25 OD2 86.0 80.2 REMARK 620 4 THR A 27 O 83.1 155.4 83.1 REMARK 620 5 GLU A 32 OE2 97.4 75.5 154.1 122.8 REMARK 620 6 GLU A 32 OE1 113.2 127.4 147.9 74.6 52.6 REMARK 620 7 HOH A 346 O 158.1 81.4 83.6 114.5 84.1 85.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD2 REMARK 620 2 ASP A 59 OD1 81.8 REMARK 620 3 ASN A 61 OD1 90.9 76.8 REMARK 620 4 THR A 63 O 87.1 153.0 78.9 REMARK 620 5 GLU A 68 OE1 103.2 126.3 154.0 80.1 REMARK 620 6 GLU A 68 OE2 90.8 74.6 150.8 130.3 52.2 REMARK 620 7 HOH A 344 O 166.0 84.6 89.2 106.6 82.3 82.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 94 OD1 REMARK 620 2 ASP A 96 OD1 86.1 REMARK 620 3 ASN A 98 OD1 86.5 76.9 REMARK 620 4 TYR A 100 O 83.6 156.3 81.2 REMARK 620 5 GLU A 105 OE1 100.2 126.9 155.3 76.1 REMARK 620 6 GLU A 105 OE2 106.5 74.8 147.8 128.7 52.7 REMARK 620 7 HOH A 316 O 170.7 94.4 84.6 92.4 86.9 82.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 130 OD1 REMARK 620 2 ASP A 132 OD1 82.2 REMARK 620 3 ASP A 134 OD1 85.6 79.5 REMARK 620 4 GLN A 136 O 88.5 153.4 74.9 REMARK 620 5 GLN A 136 O 81.1 152.8 77.9 8.1 REMARK 620 6 GLU A 141 OE1 112.2 125.5 149.8 81.1 81.0 REMARK 620 7 GLU A 141 OE2 91.7 76.5 156.0 128.9 125.3 51.9 REMARK 620 8 HOH A 348 O 164.0 87.1 80.9 96.0 104.0 83.7 97.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 213 DBREF 4DJC A 1 149 UNP P62158 CALM_HUMAN 1 149 DBREF 4DJC B 1491 1522 UNP Q14524 SCN5A_HUMAN 1491 1522 SEQADV 4DJC SER A -2 UNP P62158 EXPRESSION TAG SEQADV 4DJC ASN A -1 UNP P62158 EXPRESSION TAG SEQADV 4DJC ALA A 0 UNP P62158 EXPRESSION TAG SEQADV 4DJC SER B 1488 UNP Q14524 EXPRESSION TAG SEQADV 4DJC ASN B 1489 UNP Q14524 EXPRESSION TAG SEQADV 4DJC ALA B 1490 UNP Q14524 EXPRESSION TAG SEQRES 1 A 152 SER ASN ALA MET ALA ASP GLN LEU THR GLU GLU GLN ILE SEQRES 2 A 152 ALA GLU PHE LYS GLU ALA PHE SER LEU PHE ASP LYS ASP SEQRES 3 A 152 GLY ASP GLY THR ILE THR THR LYS GLU LEU GLY THR VAL SEQRES 4 A 152 MET ARG SER LEU GLY GLN ASN PRO THR GLU ALA GLU LEU SEQRES 5 A 152 GLN ASP MET ILE ASN GLU VAL ASP ALA ASP GLY ASN GLY SEQRES 6 A 152 THR ILE ASP PHE PRO GLU PHE LEU THR MET MET ALA ARG SEQRES 7 A 152 LYS MET LYS ASP THR ASP SER GLU GLU GLU ILE ARG GLU SEQRES 8 A 152 ALA PHE ARG VAL PHE ASP LYS ASP GLY ASN GLY TYR ILE SEQRES 9 A 152 SER ALA ALA GLU LEU ARG HIS VAL MET THR ASN LEU GLY SEQRES 10 A 152 GLU LYS LEU THR ASP GLU GLU VAL ASP GLU MET ILE ARG SEQRES 11 A 152 GLU ALA ASP ILE ASP GLY ASP GLY GLN VAL ASN TYR GLU SEQRES 12 A 152 GLU PHE VAL GLN MET MET THR ALA LYS SEQRES 1 B 35 SER ASN ALA GLN LYS LYS TYR TYR ASN ALA MET LYS LYS SEQRES 2 B 35 LEU GLY SER LYS LYS PRO GLN LYS PRO ILE PRO ARG PRO SEQRES 3 B 35 LEU ASN LYS TYR GLN GLY PHE ILE PHE HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET IPA A 205 4 HET IPA A 206 4 HET IPA A 207 4 HET IPA A 208 4 HET IPA A 209 4 HET IPA A 210 4 HET IPA A 211 4 HET IPA A 212 4 HET IPA A 213 4 HETNAM CA CALCIUM ION HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 3 CA 4(CA 2+) FORMUL 7 IPA 9(C3 H8 O) FORMUL 16 HOH *161(H2 O) HELIX 1 1 MET A 1 LEU A 5 5 5 HELIX 2 2 THR A 6 ASP A 21 1 16 HELIX 3 3 THR A 29 LEU A 40 1 12 HELIX 4 4 THR A 45 ASP A 57 1 13 HELIX 5 5 PHE A 66 ASP A 94 1 29 HELIX 6 6 SER A 102 LEU A 113 1 12 HELIX 7 7 THR A 118 ASP A 130 1 13 HELIX 8 8 TYR A 139 THR A 147 1 9 HELIX 9 9 ALA B 1490 LEU B 1501 1 12 SHEET 1 A 2 THR A 27 ILE A 28 0 SHEET 2 A 2 ILE A 64 ASP A 65 -1 O ILE A 64 N ILE A 28 SHEET 1 B 2 TYR A 100 ILE A 101 0 SHEET 2 B 2 VAL A 137 ASN A 138 -1 O VAL A 137 N ILE A 101 LINK OD1 ASP A 21 CA CA A 201 1555 1555 2.21 LINK OD1 ASP A 23 CA CA A 201 1555 1555 2.42 LINK OD2 ASP A 25 CA CA A 201 1555 1555 2.42 LINK O THR A 27 CA CA A 201 1555 1555 2.29 LINK OE2 GLU A 32 CA CA A 201 1555 1555 2.45 LINK OE1 GLU A 32 CA CA A 201 1555 1555 2.46 LINK OD2 ASP A 57 CA CA A 202 1555 1555 2.22 LINK OD1 ASP A 59 CA CA A 202 1555 1555 2.41 LINK OD1 ASN A 61 CA CA A 202 1555 1555 2.37 LINK O THR A 63 CA CA A 202 1555 1555 2.34 LINK OE1 GLU A 68 CA CA A 202 1555 1555 2.45 LINK OE2 GLU A 68 CA CA A 202 1555 1555 2.49 LINK OD1 ASP A 94 CA CA A 203 1555 1555 2.29 LINK OD1 ASP A 96 CA CA A 203 1555 1555 2.34 LINK OD1 ASN A 98 CA CA A 203 1555 1555 2.39 LINK O TYR A 100 CA CA A 203 1555 1555 2.28 LINK OE1 GLU A 105 CA CA A 203 1555 1555 2.45 LINK OE2 GLU A 105 CA CA A 203 1555 1555 2.49 LINK OD1 ASP A 130 CA CA A 204 1555 1555 2.28 LINK OD1 ASP A 132 CA CA A 204 1555 1555 2.34 LINK OD1 ASP A 134 CA CA A 204 1555 1555 2.37 LINK O BGLN A 136 CA CA A 204 1555 1555 2.23 LINK O AGLN A 136 CA CA A 204 1555 1555 2.40 LINK OE1 GLU A 141 CA CA A 204 1555 1555 2.45 LINK OE2 GLU A 141 CA CA A 204 1555 1555 2.48 LINK CA CA A 201 O HOH A 346 1555 1555 2.48 LINK CA CA A 202 O HOH A 344 1555 1555 2.26 LINK CA CA A 203 O HOH A 316 1555 1555 2.42 LINK CA CA A 204 O HOH A 348 1555 1555 2.41 SITE 1 AC1 6 ASP A 21 ASP A 23 ASP A 25 THR A 27 SITE 2 AC1 6 GLU A 32 HOH A 346 SITE 1 AC2 6 ASP A 57 ASP A 59 ASN A 61 THR A 63 SITE 2 AC2 6 GLU A 68 HOH A 344 SITE 1 AC3 6 ASP A 94 ASP A 96 ASN A 98 TYR A 100 SITE 2 AC3 6 GLU A 105 HOH A 316 SITE 1 AC4 6 ASP A 130 ASP A 132 ASP A 134 GLN A 136 SITE 2 AC4 6 GLU A 141 HOH A 348 SITE 1 AC5 3 LYS A 14 PHE A 66 ASP A 134 SITE 1 AC6 3 ALA A 47 ASP A 123 HOH A 383 SITE 1 AC7 2 TYR A 100 HOH A 302 SITE 1 AC8 6 THR A 30 LYS A 31 ASP A 59 GLY A 60 SITE 2 AC8 6 ASP A 96 ASN A 98 SITE 1 AC9 2 ILE A 64 MET A 72 SITE 1 BC1 3 GLY A 24 ARG A 127 GLY A 135 SITE 1 BC2 5 THR A 30 GLN A 50 ALA A 58 HOH A 364 SITE 2 BC2 5 HOH A 450 SITE 1 BC3 3 MET A 37 GLN A 42 GLU A 48 CRYST1 28.380 72.720 97.010 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035236 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013751 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010308 0.00000