PDB Short entry for 4DN5 HEADER TRANSFERASE 08-FEB-12 4DN5 TITLE CRYSTAL STRUCTURE OF NF-KB-INDUCING KINASE (NIK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 330-680; COMPND 5 SYNONYM: NF-KAPPA-BETA-INDUCING KINASE, HSNIK, SERINE/THREONINE- COMPND 6 PROTEIN KINASE NIK; COMPND 7 EC: 2.7.11.25; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP3K14, NF-KB-INDUCING KINASE, NIK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBACHT KEYWDS NON-RD KINASE, PROTEIN SERINE/THREONINE KINASE, TRANSFERASE, ATP KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR X.MIN,J.LIU,A.SUDOM,N.P.WALKER,Z.WANG REVDAT 5 28-FEB-24 4DN5 1 REMARK SEQADV LINK REVDAT 4 17-JUL-13 4DN5 1 JRNL REVDAT 3 10-JUL-13 4DN5 1 JRNL REVDAT 2 30-JAN-13 4DN5 1 HETATM REVDAT 1 27-JUN-12 4DN5 0 JRNL AUTH J.LIU,A.SUDOM,X.MIN,Z.CAO,X.GAO,M.AYRES,F.LEE,P.CAO, JRNL AUTH 2 S.JOHNSTONE,O.PLOTNIKOVA,N.WALKER,G.CHEN,Z.WANG JRNL TITL STRUCTURE OF NUCLEAR FACTOR KAPPA B-INDUCING KINASE DOMAIN JRNL TITL 2 REVEALS A CONSTITUTIVELY ACTIVE CONFORMATION JRNL REF J.BIOL.CHEM. V. 287 27326 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22718757 JRNL DOI 10.1074/JBC.M112.366658 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1417 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5128 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.04000 REMARK 3 B22 (A**2) : -7.04000 REMARK 3 B33 (A**2) : 14.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.213 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5337 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7225 ; 0.997 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 657 ; 4.732 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;34.688 ;23.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 893 ;15.824 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;15.774 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 774 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4024 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.626 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.374 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4DN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 137194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% POLYETHYLENE GLYCOL 3350, 200 MM REMARK 280 AMMONIUM SULFATE AND 0.1 M SODIUM CITRATE, PH 5.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.70000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.85000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.55000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 325 REMARK 465 ALA A 326 REMARK 465 MET A 327 REMARK 465 GLY A 328 REMARK 465 SER A 329 REMARK 465 LYS A 330 REMARK 465 PHE A 331 REMARK 465 PRO A 543 REMARK 465 ASP A 544 REMARK 465 GLY A 545 REMARK 465 LEU A 546 REMARK 465 GLY A 547 REMARK 465 LYS A 548 REMARK 465 ASP A 549 REMARK 465 LEU A 550 REMARK 465 LEU A 551 REMARK 465 THR A 552 REMARK 465 GLY A 553 REMARK 465 ASP A 554 REMARK 465 TYR A 555 REMARK 465 PRO A 676 REMARK 465 PRO A 677 REMARK 465 ASN A 678 REMARK 465 GLN A 679 REMARK 465 ALA A 680 REMARK 465 GLY B 325 REMARK 465 ALA B 326 REMARK 465 MET B 327 REMARK 465 GLY B 328 REMARK 465 SER B 329 REMARK 465 LYS B 330 REMARK 465 PHE B 331 REMARK 465 SER B 332 REMARK 465 PRO B 543 REMARK 465 ASP B 544 REMARK 465 GLY B 545 REMARK 465 LEU B 546 REMARK 465 GLY B 547 REMARK 465 LYS B 548 REMARK 465 ASP B 549 REMARK 465 LEU B 550 REMARK 465 LEU B 551 REMARK 465 THR B 552 REMARK 465 GLY B 553 REMARK 465 ASP B 554 REMARK 465 TYR B 555 REMARK 465 PRO B 676 REMARK 465 PRO B 677 REMARK 465 ASN B 678 REMARK 465 GLN B 679 REMARK 465 ALA B 680 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 365 -15.20 -156.13 REMARK 500 ARG A 368 150.33 70.24 REMARK 500 PRO A 372 -159.79 -75.38 REMARK 500 VAL A 397 -59.49 -127.97 REMARK 500 LEU A 404 126.89 65.95 REMARK 500 ASP A 515 44.51 -144.32 REMARK 500 ASP A 534 82.45 60.95 REMARK 500 TRP A 596 -40.19 69.86 REMARK 500 PRO A 614 49.47 -74.54 REMARK 500 ARG A 666 -134.95 62.60 REMARK 500 GLU B 396 -23.56 74.85 REMARK 500 GLN B 403 -150.45 51.15 REMARK 500 SER B 476 103.88 65.67 REMARK 500 ASP B 515 49.09 -148.12 REMARK 500 ASP B 534 78.55 62.32 REMARK 500 ASP B 574 -154.05 -138.55 REMARK 500 TRP B 596 -44.82 75.75 REMARK 500 PRO B 614 27.66 -65.59 REMARK 500 PRO B 624 4.54 -61.86 REMARK 500 LYS B 662 -32.72 -130.01 REMARK 500 GLU B 668 107.70 59.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 520 OD1 REMARK 620 2 ASP A 534 OD2 81.4 REMARK 620 3 AGS A1008 O1A 95.3 89.7 REMARK 620 4 AGS A1008 O2B 174.4 94.0 87.8 REMARK 620 5 HOH A1118 O 84.2 90.8 179.2 92.7 REMARK 620 6 HOH A1119 O 90.5 171.6 93.3 93.9 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 520 OD1 REMARK 620 2 ASP B 534 OD1 74.4 REMARK 620 3 AGS B1003 O2A 89.9 86.9 REMARK 620 4 AGS B1003 O2B 169.2 94.9 89.4 REMARK 620 5 HOH B1108 O 86.1 160.4 91.3 104.7 REMARK 620 6 HOH B1109 O 91.1 83.5 169.7 87.7 99.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS B 1003 DBREF 4DN5 A 330 680 UNP Q99558 M3K14_HUMAN 330 680 DBREF 4DN5 B 330 680 UNP Q99558 M3K14_HUMAN 330 680 SEQADV 4DN5 GLY A 325 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 ALA A 326 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 MET A 327 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 GLY A 328 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 SER A 329 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 ASP A 549 UNP Q99558 SER 549 ENGINEERED MUTATION SEQADV 4DN5 GLY B 325 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 ALA B 326 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 MET B 327 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 GLY B 328 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 SER B 329 UNP Q99558 EXPRESSION TAG SEQADV 4DN5 ASP B 549 UNP Q99558 SER 549 ENGINEERED MUTATION SEQRES 1 A 356 GLY ALA MET GLY SER LYS PHE SER VAL GLU GLU TYR LEU SEQRES 2 A 356 VAL HIS ALA LEU GLN GLY SER VAL SER SER GLY GLN ALA SEQRES 3 A 356 HIS SER LEU THR SER LEU ALA LYS THR TRP ALA ALA ARG SEQRES 4 A 356 GLY SER ARG SER ARG GLU PRO SER PRO LYS THR GLU ASP SEQRES 5 A 356 ASN GLU GLY VAL LEU LEU THR GLU LYS LEU LYS PRO VAL SEQRES 6 A 356 ASP TYR GLU TYR ARG GLU GLU VAL HIS TRP ALA THR HIS SEQRES 7 A 356 GLN LEU ARG LEU GLY ARG GLY SER PHE GLY GLU VAL HIS SEQRES 8 A 356 ARG MET GLU ASP LYS GLN THR GLY PHE GLN CYS ALA VAL SEQRES 9 A 356 LYS LYS VAL ARG LEU GLU VAL PHE ARG ALA GLU GLU LEU SEQRES 10 A 356 MET ALA CYS ALA GLY LEU THR SER PRO ARG ILE VAL PRO SEQRES 11 A 356 LEU TYR GLY ALA VAL ARG GLU GLY PRO TRP VAL ASN ILE SEQRES 12 A 356 PHE MET GLU LEU LEU GLU GLY GLY SER LEU GLY GLN LEU SEQRES 13 A 356 VAL LYS GLU GLN GLY CYS LEU PRO GLU ASP ARG ALA LEU SEQRES 14 A 356 TYR TYR LEU GLY GLN ALA LEU GLU GLY LEU GLU TYR LEU SEQRES 15 A 356 HIS SER ARG ARG ILE LEU HIS GLY ASP VAL LYS ALA ASP SEQRES 16 A 356 ASN VAL LEU LEU SER SER ASP GLY SER HIS ALA ALA LEU SEQRES 17 A 356 CYS ASP PHE GLY HIS ALA VAL CYS LEU GLN PRO ASP GLY SEQRES 18 A 356 LEU GLY LYS ASP LEU LEU THR GLY ASP TYR ILE PRO GLY SEQRES 19 A 356 THR GLU THR HIS MET ALA PRO GLU VAL VAL LEU GLY ARG SEQRES 20 A 356 SER CYS ASP ALA LYS VAL ASP VAL TRP SER SER CYS CYS SEQRES 21 A 356 MET MET LEU HIS MET LEU ASN GLY CYS HIS PRO TRP THR SEQRES 22 A 356 GLN PHE PHE ARG GLY PRO LEU CYS LEU LYS ILE ALA SER SEQRES 23 A 356 GLU PRO PRO PRO VAL ARG GLU ILE PRO PRO SER CYS ALA SEQRES 24 A 356 PRO LEU THR ALA GLN ALA ILE GLN GLU GLY LEU ARG LYS SEQRES 25 A 356 GLU PRO ILE HIS ARG VAL SER ALA ALA GLU LEU GLY GLY SEQRES 26 A 356 LYS VAL ASN ARG ALA LEU GLN GLN VAL GLY GLY LEU LYS SEQRES 27 A 356 SER PRO TRP ARG GLY GLU TYR LYS GLU PRO ARG HIS PRO SEQRES 28 A 356 PRO PRO ASN GLN ALA SEQRES 1 B 356 GLY ALA MET GLY SER LYS PHE SER VAL GLU GLU TYR LEU SEQRES 2 B 356 VAL HIS ALA LEU GLN GLY SER VAL SER SER GLY GLN ALA SEQRES 3 B 356 HIS SER LEU THR SER LEU ALA LYS THR TRP ALA ALA ARG SEQRES 4 B 356 GLY SER ARG SER ARG GLU PRO SER PRO LYS THR GLU ASP SEQRES 5 B 356 ASN GLU GLY VAL LEU LEU THR GLU LYS LEU LYS PRO VAL SEQRES 6 B 356 ASP TYR GLU TYR ARG GLU GLU VAL HIS TRP ALA THR HIS SEQRES 7 B 356 GLN LEU ARG LEU GLY ARG GLY SER PHE GLY GLU VAL HIS SEQRES 8 B 356 ARG MET GLU ASP LYS GLN THR GLY PHE GLN CYS ALA VAL SEQRES 9 B 356 LYS LYS VAL ARG LEU GLU VAL PHE ARG ALA GLU GLU LEU SEQRES 10 B 356 MET ALA CYS ALA GLY LEU THR SER PRO ARG ILE VAL PRO SEQRES 11 B 356 LEU TYR GLY ALA VAL ARG GLU GLY PRO TRP VAL ASN ILE SEQRES 12 B 356 PHE MET GLU LEU LEU GLU GLY GLY SER LEU GLY GLN LEU SEQRES 13 B 356 VAL LYS GLU GLN GLY CYS LEU PRO GLU ASP ARG ALA LEU SEQRES 14 B 356 TYR TYR LEU GLY GLN ALA LEU GLU GLY LEU GLU TYR LEU SEQRES 15 B 356 HIS SER ARG ARG ILE LEU HIS GLY ASP VAL LYS ALA ASP SEQRES 16 B 356 ASN VAL LEU LEU SER SER ASP GLY SER HIS ALA ALA LEU SEQRES 17 B 356 CYS ASP PHE GLY HIS ALA VAL CYS LEU GLN PRO ASP GLY SEQRES 18 B 356 LEU GLY LYS ASP LEU LEU THR GLY ASP TYR ILE PRO GLY SEQRES 19 B 356 THR GLU THR HIS MET ALA PRO GLU VAL VAL LEU GLY ARG SEQRES 20 B 356 SER CYS ASP ALA LYS VAL ASP VAL TRP SER SER CYS CYS SEQRES 21 B 356 MET MET LEU HIS MET LEU ASN GLY CYS HIS PRO TRP THR SEQRES 22 B 356 GLN PHE PHE ARG GLY PRO LEU CYS LEU LYS ILE ALA SER SEQRES 23 B 356 GLU PRO PRO PRO VAL ARG GLU ILE PRO PRO SER CYS ALA SEQRES 24 B 356 PRO LEU THR ALA GLN ALA ILE GLN GLU GLY LEU ARG LYS SEQRES 25 B 356 GLU PRO ILE HIS ARG VAL SER ALA ALA GLU LEU GLY GLY SEQRES 26 B 356 LYS VAL ASN ARG ALA LEU GLN GLN VAL GLY GLY LEU LYS SEQRES 27 B 356 SER PRO TRP ARG GLY GLU TYR LYS GLU PRO ARG HIS PRO SEQRES 28 B 356 PRO PRO ASN GLN ALA HET MG A1001 1 HET GOL A1002 6 HET EDO A1003 4 HET EDO A1004 4 HET EDO A1005 4 HET EDO A1006 4 HET EDO A1007 4 HET AGS A1008 31 HET MG B1001 1 HET EDO B1002 4 HET AGS B1003 31 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 EDO 6(C2 H6 O2) FORMUL 10 AGS 2(C10 H16 N5 O12 P3 S) FORMUL 14 HOH *70(H2 O) HELIX 1 1 VAL A 333 GLN A 342 1 10 HELIX 2 2 GLN A 349 GLY A 364 1 16 HELIX 3 3 ALA A 438 ALA A 443 1 6 HELIX 4 4 SER A 476 GLY A 485 1 10 HELIX 5 5 PRO A 488 ARG A 509 1 22 HELIX 6 6 LYS A 517 ASP A 519 5 3 HELIX 7 7 THR A 559 MET A 563 5 5 HELIX 8 8 ALA A 564 LEU A 569 1 6 HELIX 9 9 ALA A 575 GLY A 592 1 18 HELIX 10 10 LEU A 604 GLU A 611 1 8 HELIX 11 11 PRO A 613 ILE A 618 5 6 HELIX 12 12 ALA A 623 LEU A 634 1 12 HELIX 13 13 SER A 643 GLY A 659 1 17 HELIX 14 14 GLU B 334 GLN B 342 1 9 HELIX 15 15 GLN B 349 GLY B 364 1 16 HELIX 16 16 ALA B 438 ALA B 443 1 6 HELIX 17 17 SER B 476 GLN B 484 1 9 HELIX 18 18 PRO B 488 SER B 508 1 21 HELIX 19 19 LYS B 517 ASP B 519 5 3 HELIX 20 20 THR B 559 MET B 563 5 5 HELIX 21 21 ALA B 564 GLY B 570 1 7 HELIX 22 22 ALA B 575 GLY B 592 1 18 HELIX 23 23 LEU B 604 GLU B 611 1 8 HELIX 24 24 PRO B 613 ILE B 618 5 6 HELIX 25 25 LEU B 625 LEU B 634 1 10 HELIX 26 26 SER B 643 VAL B 658 1 16 SHEET 1 A 7 VAL A 345 SER A 347 0 SHEET 2 A 7 ASN A 377 LEU A 381 1 O LEU A 381 N SER A 346 SHEET 3 A 7 LEU A 455 GLU A 461 -1 O ARG A 460 N GLU A 378 SHEET 4 A 7 TRP A 464 MET A 469 -1 O TRP A 464 N GLU A 461 SHEET 5 A 7 GLN A 425 ARG A 432 -1 N VAL A 431 O VAL A 465 SHEET 6 A 7 GLU A 413 ASP A 419 -1 N GLU A 413 O LYS A 430 SHEET 7 A 7 TRP A 399 THR A 401 -1 N ALA A 400 O GLU A 418 SHEET 1 B 7 VAL A 345 SER A 347 0 SHEET 2 B 7 ASN A 377 LEU A 381 1 O LEU A 381 N SER A 346 SHEET 3 B 7 LEU A 455 GLU A 461 -1 O ARG A 460 N GLU A 378 SHEET 4 B 7 TRP A 464 MET A 469 -1 O TRP A 464 N GLU A 461 SHEET 5 B 7 GLN A 425 ARG A 432 -1 N VAL A 431 O VAL A 465 SHEET 6 B 7 GLU A 413 ASP A 419 -1 N GLU A 413 O LYS A 430 SHEET 7 B 7 GLY A 407 ARG A 408 -1 N GLY A 407 O VAL A 414 SHEET 1 C 2 ILE A 511 LEU A 512 0 SHEET 2 C 2 VAL A 539 CYS A 540 -1 O VAL A 539 N LEU A 512 SHEET 1 D 2 VAL A 521 LEU A 523 0 SHEET 2 D 2 ALA A 530 LEU A 532 -1 O ALA A 531 N LEU A 522 SHEET 1 E 7 VAL B 345 SER B 347 0 SHEET 2 E 7 ASN B 377 LEU B 381 1 O LEU B 381 N SER B 346 SHEET 3 E 7 LEU B 455 GLU B 461 -1 O ARG B 460 N GLU B 378 SHEET 4 E 7 TRP B 464 MET B 469 -1 O PHE B 468 N GLY B 457 SHEET 5 E 7 GLN B 425 ARG B 432 -1 N VAL B 431 O VAL B 465 SHEET 6 E 7 GLU B 413 ASP B 419 -1 N MET B 417 O CYS B 426 SHEET 7 E 7 TRP B 399 ARG B 408 -1 N HIS B 402 O ARG B 416 SHEET 1 F 2 ILE B 511 LEU B 512 0 SHEET 2 F 2 VAL B 539 CYS B 540 -1 O VAL B 539 N LEU B 512 SHEET 1 G 2 VAL B 521 LEU B 523 0 SHEET 2 G 2 ALA B 530 LEU B 532 -1 O ALA B 531 N LEU B 522 LINK OD1 ASN A 520 MG MG A1001 1555 1555 2.15 LINK OD2 ASP A 534 MG MG A1001 1555 1555 2.09 LINK MG MG A1001 O1A AGS A1008 1555 1555 1.83 LINK MG MG A1001 O2B AGS A1008 1555 1555 2.03 LINK MG MG A1001 O HOH A1118 1555 1555 2.18 LINK MG MG A1001 O HOH A1119 1555 1555 2.20 LINK OD1 ASN B 520 MG MG B1001 1555 1555 2.30 LINK OD1 ASP B 534 MG MG B1001 1555 1555 2.17 LINK MG MG B1001 O2A AGS B1003 1555 1555 1.86 LINK MG MG B1001 O2B AGS B1003 1555 1555 1.88 LINK MG MG B1001 O HOH B1108 1555 1555 2.08 LINK MG MG B1001 O HOH B1109 1555 1555 2.53 CISPEP 1 GLY A 602 PRO A 603 0 0.53 CISPEP 2 GLY B 602 PRO B 603 0 1.76 SITE 1 AC1 5 ASN A 520 ASP A 534 AGS A1008 HOH A1118 SITE 2 AC1 5 HOH A1119 SITE 1 AC2 3 SER A 621 CYS A 622 PRO B 675 SITE 1 AC3 2 GLN A 479 ARG A 666 SITE 1 AC4 2 ARG A 491 ASP A 526 SITE 1 AC5 1 GLU A 392 SITE 1 AC6 6 PHE A 411 ARG A 437 GLY A 536 HIS A 537 SITE 2 AC6 6 AGS A1008 ARG B 368 SITE 1 AC7 4 ARG A 571 GLU A 637 THR B 422 GLY B 423 SITE 1 AC8 24 GLY A 407 GLY A 409 SER A 410 PHE A 411 SITE 2 AC8 24 GLY A 412 VAL A 414 ALA A 427 LYS A 429 SITE 3 AC8 24 MET A 469 GLU A 470 LEU A 472 SER A 476 SITE 4 AC8 24 GLN A 479 ASP A 515 ASP A 519 ASN A 520 SITE 5 AC8 24 LEU A 522 ASP A 534 HIS A 537 MG A1001 SITE 6 AC8 24 EDO A1006 HOH A1118 HOH A1119 HOH A1129 SITE 1 AC9 5 ASN B 520 ASP B 534 AGS B1003 HOH B1108 SITE 2 AC9 5 HOH B1109 SITE 1 BC1 6 GLU B 440 MET B 469 CYS B 533 ASP B 534 SITE 2 BC1 6 PHE B 535 AGS B1003 SITE 1 BC2 22 GLY B 407 GLY B 409 SER B 410 PHE B 411 SITE 2 BC2 22 GLY B 412 VAL B 414 LYS B 429 MET B 469 SITE 3 BC2 22 GLU B 470 LEU B 472 SER B 476 ASP B 515 SITE 4 BC2 22 ASP B 519 ASN B 520 LEU B 522 ASP B 534 SITE 5 BC2 22 HIS B 537 MG B1001 EDO B1002 HOH B1108 SITE 6 BC2 22 HOH B1109 HOH B1122 CRYST1 85.060 85.060 115.400 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011756 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008666 0.00000