PDB Short entry for 4DRJ HEADER ISOMERASE/TRANSFERASE 17-FEB-12 4DRJ TITLE O-CRYSTAL STRUCTURE OF THE PPIASE DOMAIN OF FKBP52, RAPAMYCIN AND THE TITLE 2 FRB FRAGMENT OF MTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FK1 DOMAIN, UNP RESIDUES 1-140; COMPND 5 SYNONYM: PPIASE FKBP4, 51 KDA FK506-BINDING PROTEIN, FKBP51, 52 KDA COMPND 6 FK506-BINDING PROTEIN, 52 KDA FKBP, FKBP-52, 59 KDA IMMUNOPHILIN, COMPND 7 P59, FK506-BINDING PROTEIN 4, FKBP-4, FKBP59, HSP-BINDING COMPND 8 IMMUNOPHILIN, HBI, IMMUNOPHILIN FKBP52, ROTAMASE, PEPTIDYL-PROLYL COMPND 9 CIS-TRANS ISOMERASE FKBP4, N-TERMINALLY PROCESSED; COMPND 10 EC: 5.2.1.8; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: SERINE/THREONINE-PROTEIN KINASE MTOR; COMPND 14 CHAIN: B; COMPND 15 FRAGMENT: FRB DOMAIN, UNP RESIDUES 2025-2114; COMPND 16 SYNONYM: FK506-BINDING PROTEIN 12-RAPAMYCIN COMPLEX-ASSOCIATED COMPND 17 PROTEIN 1, FKBP12-RAPAMYCIN COMPLEX-ASSOCIATED PROTEIN, MAMMALIAN COMPND 18 TARGET OF RAPAMYCIN, MTOR, MECHANISTIC TARGET OF RAPAMYCIN, RAPAMYCIN COMPND 19 AND FKBP12 TARGET 1, RAPAMYCIN TARGET PROTEIN 1; COMPND 20 EC: 2.7.11.1; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FKBP4, FKBP52; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: FRAP, FRAP1, FRAP2, MTOR, RAFT1, RAPT1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA KEYWDS FK-506 BINDING DOMAIN, HSP90 COCHAPERONE, IMMUNOPHILIN, PEPTIDYL- KEYWDS 2 PROLYL ISOMERASE, KINASE, SIGNALLING, MAMMALIAN TARGET OF RAPAMYCIN, KEYWDS 3 IMMUNOSUPPRESSION, CANCER, ISOMERASE-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.MAERZ,A.BRACHER,F.HAUSCH REVDAT 3 13-SEP-23 4DRJ 1 REMARK SEQADV REVDAT 2 27-MAR-13 4DRJ 1 JRNL REVDAT 1 06-FEB-13 4DRJ 0 JRNL AUTH A.M.MARZ,A.K.FABIAN,C.KOZANY,A.BRACHER,F.HAUSCH JRNL TITL LARGE FK506-BINDING PROTEINS SHAPE THE PHARMACOLOGY OF JRNL TITL 2 RAPAMYCIN. JRNL REF MOL.CELL.BIOL. V. 33 1357 2013 JRNL REFN ISSN 0270-7306 JRNL PMID 23358420 JRNL DOI 10.1128/MCB.00678-12 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 23105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1233 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1657 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1705 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.362 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1850 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2503 ; 1.287 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 221 ; 5.860 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;32.766 ;23.924 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;16.796 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.345 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1403 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 859 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1278 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.148 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1123 ; 0.691 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1748 ; 0.933 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 833 ; 1.654 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 755 ; 2.460 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4280 -1.7703 -10.3185 REMARK 3 T TENSOR REMARK 3 T11: -0.0578 T22: -0.0019 REMARK 3 T33: 0.1630 T12: 0.0334 REMARK 3 T13: -0.0830 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 13.6637 L22: 14.7119 REMARK 3 L33: 20.1436 L12: 6.0963 REMARK 3 L13: -2.0798 L23: 8.0725 REMARK 3 S TENSOR REMARK 3 S11: -0.2301 S12: -0.1265 S13: -0.1087 REMARK 3 S21: 0.9516 S22: 0.0379 S23: -1.8011 REMARK 3 S31: 1.1941 S32: 1.1692 S33: 0.1922 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9787 -9.6257 -17.4278 REMARK 3 T TENSOR REMARK 3 T11: -0.1019 T22: -0.0967 REMARK 3 T33: -0.0564 T12: 0.0460 REMARK 3 T13: 0.0039 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 3.0414 L22: 3.6461 REMARK 3 L33: 4.5477 L12: 0.2742 REMARK 3 L13: 1.3841 L23: -1.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.0915 S12: 0.4373 S13: -0.1358 REMARK 3 S21: -0.1662 S22: 0.0209 S23: -0.6186 REMARK 3 S31: 0.4152 S32: 0.4000 S33: -0.1124 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5071 -7.3506 -16.8163 REMARK 3 T TENSOR REMARK 3 T11: -0.1235 T22: -0.1270 REMARK 3 T33: -0.1483 T12: -0.0061 REMARK 3 T13: -0.0058 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 5.2655 L22: 2.3199 REMARK 3 L33: 5.8414 L12: 0.0287 REMARK 3 L13: 0.2525 L23: -0.2529 REMARK 3 S TENSOR REMARK 3 S11: 0.0653 S12: 0.4592 S13: -0.1323 REMARK 3 S21: -0.0692 S22: 0.0716 S23: -0.2515 REMARK 3 S31: 0.3739 S32: 0.0301 S33: -0.1368 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 11.0533 -10.0272 -10.7226 REMARK 3 T TENSOR REMARK 3 T11: -0.1316 T22: -0.1230 REMARK 3 T33: -0.1279 T12: -0.0223 REMARK 3 T13: -0.0502 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 3.0194 L22: 3.0368 REMARK 3 L33: 9.7304 L12: 0.6500 REMARK 3 L13: 0.3666 L23: 0.7772 REMARK 3 S TENSOR REMARK 3 S11: 0.1049 S12: -0.0055 S13: -0.2360 REMARK 3 S21: 0.1230 S22: 0.0057 S23: -0.0965 REMARK 3 S31: 0.7224 S32: -0.5337 S33: -0.1106 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2019 B 2056 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4001 -7.1863 -13.8277 REMARK 3 T TENSOR REMARK 3 T11: -0.1124 T22: -0.1376 REMARK 3 T33: 0.0569 T12: 0.0296 REMARK 3 T13: 0.0536 T23: 0.0656 REMARK 3 L TENSOR REMARK 3 L11: 9.4878 L22: 5.0127 REMARK 3 L33: 8.8243 L12: 0.5098 REMARK 3 L13: 2.5589 L23: -1.6865 REMARK 3 S TENSOR REMARK 3 S11: -0.0211 S12: 0.3763 S13: 0.4971 REMARK 3 S21: 0.0532 S22: 0.0603 S23: 0.7613 REMARK 3 S31: -0.2389 S32: -0.4068 S33: -0.0392 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2057 B 2067 REMARK 3 ORIGIN FOR THE GROUP (A): -23.3301 -14.2279 -25.1460 REMARK 3 T TENSOR REMARK 3 T11: -0.0839 T22: 0.6316 REMARK 3 T33: 0.5619 T12: 0.0809 REMARK 3 T13: -0.0857 T23: -0.2265 REMARK 3 L TENSOR REMARK 3 L11: 42.6260 L22: 4.5786 REMARK 3 L33: 71.8690 L12: -6.6214 REMARK 3 L13: 32.4656 L23: 7.8935 REMARK 3 S TENSOR REMARK 3 S11: 1.0581 S12: 2.7787 S13: -1.5939 REMARK 3 S21: 0.7081 S22: -0.8712 S23: 1.3969 REMARK 3 S31: -1.0863 S32: -2.4896 S33: -0.1868 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2068 B 2098 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3363 -19.5417 -14.0426 REMARK 3 T TENSOR REMARK 3 T11: -0.1309 T22: -0.1061 REMARK 3 T33: -0.0760 T12: -0.0271 REMARK 3 T13: 0.0244 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 4.0641 L22: 4.9007 REMARK 3 L33: 13.4649 L12: -0.2758 REMARK 3 L13: 1.1641 L23: -5.2036 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.4993 S13: -0.1352 REMARK 3 S21: -0.2047 S22: 0.1224 S23: 0.4303 REMARK 3 S31: 0.3178 S32: -0.2313 S33: -0.0649 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2099 B 2114 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9983 -12.2340 -22.2210 REMARK 3 T TENSOR REMARK 3 T11: -0.0942 T22: 0.1096 REMARK 3 T33: -0.1430 T12: -0.0820 REMARK 3 T13: -0.0111 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 8.5503 L22: 11.5020 REMARK 3 L33: 13.9717 L12: 0.7524 REMARK 3 L13: 0.4182 L23: -4.4869 REMARK 3 S TENSOR REMARK 3 S11: -0.1935 S12: 1.3221 S13: 0.2896 REMARK 3 S21: -0.8330 S22: 0.1662 S23: 0.2121 REMARK 3 S31: -0.1937 S32: 0.7853 S33: 0.0273 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9323 -8.5738 -13.1352 REMARK 3 T TENSOR REMARK 3 T11: -0.1529 T22: -0.1078 REMARK 3 T33: -0.1994 T12: -0.0075 REMARK 3 T13: -0.0131 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 12.1561 L22: 4.2415 REMARK 3 L33: 2.3710 L12: 3.6762 REMARK 3 L13: 0.4920 L23: 0.4307 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: 0.1893 S13: 0.2681 REMARK 3 S21: 0.0990 S22: 0.0541 S23: 0.1201 REMARK 3 S31: 0.0091 S32: -0.1404 S33: -0.1152 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4DRJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000070692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24366 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 70.186 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.04400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : 0.35000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3FAP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS, 1.95M (NH4)2SO4, PH 6.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.26150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.07100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.49450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.07100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.26150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.49450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 MET A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 GLN A 14 REMARK 465 SER A 15 REMARK 465 ALA A 16 REMARK 465 PRO A 17 REMARK 465 LEU A 18 REMARK 465 GLU A 140 REMARK 465 GLY B 2017 REMARK 465 ALA B 2018 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 ASP A 72 CG OD1 OD2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 ASP A 75 CG OD1 OD2 REMARK 470 GLU B2022 CG CD OE1 OE2 REMARK 470 GLU B2025 CG CD OE1 OE2 REMARK 470 GLU B2029 CG CD OE1 OE2 REMARK 470 LEU B2065 CG CD1 CD2 REMARK 470 THR B2068 OG1 CG2 REMARK 470 SER B2069 OG REMARK 470 GLN B2072 CG CD OE1 NE2 REMARK 470 LYS B2095 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 20 34.46 -149.80 REMARK 500 ALA A 112 -112.80 -140.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RAP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DRI RELATED DB: PDB REMARK 900 RELATED ID: 4DRJ RELATED DB: PDB DBREF 4DRJ A 1 140 UNP Q02790 FKBP4_HUMAN 1 140 DBREF 4DRJ B 2025 2114 UNP P42345 MTOR_HUMAN 2025 2114 SEQADV 4DRJ GLY A -3 UNP Q02790 EXPRESSION TAG SEQADV 4DRJ ALA A -2 UNP Q02790 EXPRESSION TAG SEQADV 4DRJ MET A -1 UNP Q02790 EXPRESSION TAG SEQADV 4DRJ GLY A 0 UNP Q02790 EXPRESSION TAG SEQADV 4DRJ GLY B 2017 UNP P42345 EXPRESSION TAG SEQADV 4DRJ ALA B 2018 UNP P42345 EXPRESSION TAG SEQADV 4DRJ MET B 2019 UNP P42345 EXPRESSION TAG SEQADV 4DRJ ASP B 2020 UNP P42345 EXPRESSION TAG SEQADV 4DRJ PRO B 2021 UNP P42345 EXPRESSION TAG SEQADV 4DRJ GLU B 2022 UNP P42345 EXPRESSION TAG SEQADV 4DRJ PHE B 2023 UNP P42345 EXPRESSION TAG SEQADV 4DRJ MET B 2024 UNP P42345 EXPRESSION TAG SEQRES 1 A 144 GLY ALA MET GLY MET THR ALA GLU GLU MET LYS ALA THR SEQRES 2 A 144 GLU SER GLY ALA GLN SER ALA PRO LEU PRO MET GLU GLY SEQRES 3 A 144 VAL ASP ILE SER PRO LYS GLN ASP GLU GLY VAL LEU LYS SEQRES 4 A 144 VAL ILE LYS ARG GLU GLY THR GLY THR GLU MET PRO MET SEQRES 5 A 144 ILE GLY ASP ARG VAL PHE VAL HIS TYR THR GLY TRP LEU SEQRES 6 A 144 LEU ASP GLY THR LYS PHE ASP SER SER LEU ASP ARG LYS SEQRES 7 A 144 ASP LYS PHE SER PHE ASP LEU GLY LYS GLY GLU VAL ILE SEQRES 8 A 144 LYS ALA TRP ASP ILE ALA ILE ALA THR MET LYS VAL GLY SEQRES 9 A 144 GLU VAL CYS HIS ILE THR CYS LYS PRO GLU TYR ALA TYR SEQRES 10 A 144 GLY SER ALA GLY SER PRO PRO LYS ILE PRO PRO ASN ALA SEQRES 11 A 144 THR LEU VAL PHE GLU VAL GLU LEU PHE GLU PHE LYS GLY SEQRES 12 A 144 GLU SEQRES 1 B 98 GLY ALA MET ASP PRO GLU PHE MET GLU MET TRP HIS GLU SEQRES 2 B 98 GLY LEU GLU GLU ALA SER ARG LEU TYR PHE GLY GLU ARG SEQRES 3 B 98 ASN VAL LYS GLY MET PHE GLU VAL LEU GLU PRO LEU HIS SEQRES 4 B 98 ALA MET MET GLU ARG GLY PRO GLN THR LEU LYS GLU THR SEQRES 5 B 98 SER PHE ASN GLN ALA TYR GLY ARG ASP LEU MET GLU ALA SEQRES 6 B 98 GLN GLU TRP CYS ARG LYS TYR MET LYS SER GLY ASN VAL SEQRES 7 B 98 LYS ASP LEU THR GLN ALA TRP ASP LEU TYR TYR HIS VAL SEQRES 8 B 98 PHE ARG ARG ILE SER LYS GLN HET RAP A 201 65 HET SO4 A 202 5 HETNAM RAP RAPAMYCIN IMMUNOSUPPRESSANT DRUG HETNAM SO4 SULFATE ION FORMUL 3 RAP C51 H79 N O13 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *151(H2 O) HELIX 1 1 ILE A 87 ALA A 95 1 9 HELIX 2 2 PRO A 109 ALA A 112 5 4 HELIX 3 3 ASP B 2020 ARG B 2042 1 23 HELIX 4 4 ASN B 2043 ARG B 2060 1 18 HELIX 5 5 THR B 2064 GLY B 2092 1 29 HELIX 6 6 ASN B 2093 LYS B 2113 1 21 SHEET 1 A 6 VAL A 23 ASP A 24 0 SHEET 2 A 6 VAL A 33 ARG A 39 -1 O LYS A 35 N VAL A 23 SHEET 3 A 6 VAL A 102 CYS A 107 -1 O HIS A 104 N VAL A 36 SHEET 4 A 6 LEU A 128 LYS A 138 -1 O LEU A 128 N CYS A 107 SHEET 5 A 6 ARG A 52 LEU A 61 -1 N PHE A 54 O PHE A 135 SHEET 6 A 6 LYS A 66 SER A 69 -1 O ASP A 68 N GLY A 59 SHEET 1 B 6 VAL A 23 ASP A 24 0 SHEET 2 B 6 VAL A 33 ARG A 39 -1 O LYS A 35 N VAL A 23 SHEET 3 B 6 VAL A 102 CYS A 107 -1 O HIS A 104 N VAL A 36 SHEET 4 B 6 LEU A 128 LYS A 138 -1 O LEU A 128 N CYS A 107 SHEET 5 B 6 ARG A 52 LEU A 61 -1 N PHE A 54 O PHE A 135 SHEET 6 B 6 PHE A 77 ASP A 80 -1 O PHE A 77 N VAL A 55 CISPEP 1 PRO A 119 PRO A 120 0 -0.70 SITE 1 AC1 24 TYR A 57 PHE A 67 ASP A 68 PHE A 77 SITE 2 AC1 24 GLY A 84 GLU A 85 VAL A 86 ILE A 87 SITE 3 AC1 24 TRP A 90 TYR A 113 LYS A 121 PHE A 130 SITE 4 AC1 24 HOH A 324 HOH A 332 HOH A 347 HOH A 401 SITE 5 AC1 24 LEU B2031 GLU B2032 SER B2035 PHE B2039 SITE 6 AC1 24 THR B2098 ASP B2102 TYR B2105 PHE B2108 SITE 1 AC2 7 ARG A 52 PHE A 54 SER A 78 HOH A 339 SITE 2 AC2 7 HOH A 390 ARG B2109 LYS B2113 CRYST1 58.523 62.989 70.142 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017087 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014257 0.00000