PDB Short entry for 4DSI
HEADER    TRANSFERASE/DNA                         19-FEB-12   4DSI              
TITLE     CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS          
TITLE    2 STEAROTHERMOPHILUS WITH DUPLEX DNA, SE-DGTP AND CALCIUM              
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE;                                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 298-876;                                          
COMPND   5 EC: 2.7.7.7;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: DNA;                                                       
COMPND  10 CHAIN: B;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: SE-DGTP;                                                   
COMPND  14 CHAIN: C;                                                            
COMPND  15 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS;                 
SOURCE   3 ORGANISM_TAXID: 1422;                                                
SOURCE   4 GENE: DPO1;                                                          
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);                                
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET28;                                    
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 OTHER_DETAILS: SYNTHESIZED DNA;                                      
SOURCE  13 MOL_ID: 3;                                                           
SOURCE  14 SYNTHETIC: YES;                                                      
SOURCE  15 OTHER_DETAILS: SE-MODIFIED DGTP                                      
KEYWDS    DNA POLYMERASE, POLYMERIZATION FIDELITY, CALCIUM CATION, PURINE       
KEYWDS   2 SELECTIVITY, BLUNT END EXTENSION, BASE STACKING, DNA SYNTHESIS,      
KEYWDS   3 TRANSFERASE-DNA COMPLEX                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.H.GAN,R.ABDUR,H.H.LIU,J.SHENG,J.CATON-WILLIANS,A.S.SOARES,Z.HUANG   
REVDAT   1   27-MAR-13 4DSI    0                                                
JRNL        AUTH   J.H.GAN,R.ABDUR,H.H.LIU,J.SHENG,J.CATON-WILLIANS,A.S.SOARES, 
JRNL        AUTH 2 Z.HUANG                                                      
JRNL        TITL   BIOCHEMICAL AND STRUCTURAL INSIGHTS INTO THE FIDELITY OF     
JRNL        TITL 2 BACILLUS STEAROTHERMOPHILUS DNA POLYMERASE                   
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.05 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.5.0109                                      
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                               
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 70.05                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 97.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 51429                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.193                           
REMARK   3   R VALUE            (WORKING SET) : 0.191                           
REMARK   3   FREE R VALUE                     : 0.234                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2753                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.05                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.10                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 3378                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 88.32                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2910                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 213                          
REMARK   3   BIN FREE R VALUE                    : 0.3030                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 4659                                    
REMARK   3   NUCLEIC ACID ATOMS       : 366                                     
REMARK   3   HETEROGEN ATOMS          : 58                                      
REMARK   3   SOLVENT ATOMS            : 242                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 31.09                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 2.18000                                              
REMARK   3    B22 (A**2) : -0.77000                                             
REMARK   3    B33 (A**2) : -1.41000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.170         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.159         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.118         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.493         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.953                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.932                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  5223 ; 0.018 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  7132 ; 1.800 ; 2.073       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   586 ; 6.293 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   231 ;34.891 ;24.156       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   884 ;18.190 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    39 ;21.156 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   796 ; 0.122 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  3785 ; 0.008 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2911 ; 0.918 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  4700 ; 1.781 ; 2.000       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  2312 ; 2.980 ; 3.000       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  2429 ; 4.792 ; 4.500       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 4DSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-12.                  
REMARK 100 THE RCSB ID CODE IS RCSB070726.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 01-JAN-11                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ALS                                
REMARK 200  BEAMLINE                       : 8.2.2                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0000                             
REMARK 200  MONOCHROMATOR                  : MIRRORS                            
REMARK 200  OPTICS                         : MIRRORS                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 54369                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.050                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 70.050                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 97.5                               
REMARK 200  DATA REDUNDANCY                : 4.300                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.07500                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 13.3000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.12                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 90.7                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.60                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.33700                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 1.800                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: PDB 3HT3                                             
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 59.22                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M COBALT CHLORIDE, 0.1 M MES (PH    
REMARK 280  6.5), 1.8 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP         
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       44.28650            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       52.96400            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       46.69350            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       52.96400            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       44.28650            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       46.69350            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6360 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 27460 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465      DA B     1                                                      
REMARK 465      DT B     2                                                      
REMARK 465      DC B     3                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500     DG B  12   O3'    DG B  12   C3'    -0.071                       
REMARK 500     DT C   3   C5     DT C   3   C7      0.043                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DG B   5   O4' -  C1' -  N9  ANGL. DEV. =  -4.5 DEGREES          
REMARK 500     DT B   8   C1' -  O4' -  C4' ANGL. DEV. =  -6.2 DEGREES          
REMARK 500     DC B   9   O5' -  C5' -  C4' ANGL. DEV. =  -4.8 DEGREES          
REMARK 500     DC B   9   O4' -  C1' -  N1  ANGL. DEV. =   2.2 DEGREES          
REMARK 500     DA B  10   C4' -  C3' -  C2' ANGL. DEV. =  -5.6 DEGREES          
REMARK 500     DC B   9   C3' -  O3' -  P   ANGL. DEV. =   7.4 DEGREES          
REMARK 500     DG B  12   O4' -  C1' -  N9  ANGL. DEV. =   3.1 DEGREES          
REMARK 500     DC C   2   OP1 -  P   -  OP2 ANGL. DEV. =  10.9 DEGREES          
REMARK 500     DT C   3   O4' -  C1' -  N1  ANGL. DEV. =   4.9 DEGREES          
REMARK 500     DG C   9   O4' -  C1' -  N9  ANGL. DEV. =   4.3 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A 402       93.07   -164.14                                   
REMARK 500    ALA A 421       49.55    -80.73                                   
REMARK 500    LYS A 431      -54.57   -124.29                                   
REMARK 500    LEU A 477      -67.34   -121.74                                   
REMARK 500    GLN A 524      157.95    175.12                                   
REMARK 500    GLU A 540      -55.57   -124.58                                   
REMARK 500    ILE A 588      -71.21    -96.87                                   
REMARK 500    ILE A 628      -31.11   -139.45                                   
REMARK 500    GLN A 691       59.73     39.88                                   
REMARK 500    HIS A 829      -55.23     72.00                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CHIRAL CENTERS                                             
REMARK 500                                                                      
REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL                     
REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY                      
REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR                        
REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE                                    
REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                            
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE                   
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16)       
REMARK 500                                                                      
REMARK 500  M RES CSSEQI    IMPROPER   EXPECTED   FOUND DETAILS                 
REMARK 500    ILE A 689        23.6      L          L   OUTSIDE RANGE           
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 610                                                                      
REMARK 610 MISSING HETEROATOM                                                   
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 610 I=INSERTION CODE):                                                   
REMARK 610   M RES C SSEQI                                                      
REMARK 610      DG C  101                                                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 901                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 902                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 903                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 904                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 905                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 906                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 907                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 908                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC9                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DG C 101                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: BC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 102                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3HT3   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM                  
REMARK 900 BACILLUS STEAROTHERMOPHILUS V713P MUTANT BOUND TO G:DCTP             
REMARK 900 RELATED ID: 4DSJ   RELATED DB: PDB                                   
REMARK 900 DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS WUTH               
REMARK 900 DUPLEX DNA, DGTP AND CALCIUM                                         
REMARK 900 RELATED ID: 4DSK   RELATED DB: PDB                                   
REMARK 900 DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS WUTH               
REMARK 900 DUPLEX DNA, PPI AND CALCIUM                                          
REMARK 900 RELATED ID: 4DSL   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM                  
REMARK 900 BACILLUS STEAROTHERMOPHILUS WITH DUPLEX DNA AND CALCIUM              
DBREF  4DSI A  298   876  UNP    D9N168   D9N168_GEOSE     1    579             
DBREF  4DSI B    1    12  PDB    4DSI     4DSI             1     12             
DBREF  4DSI C    1     9  PDB    4DSI     4DSI             1      9             
SEQADV 4DSI GLY A  296  UNP  D9N168              EXPRESSION TAG                 
SEQADV 4DSI SER A  297  UNP  D9N168              EXPRESSION TAG                 
SEQADV 4DSI ASP A  598  UNP  D9N168    ALA   301 ENGINEERED MUTATION            
SEQADV 4DSI VAL A  713  UNP  D9N168    PRO   416 ENGINEERED MUTATION            
SEQRES   1 A  581  GLY SER LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR          
SEQRES   2 A  581  GLU GLU MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU          
SEQRES   3 A  581  VAL VAL GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY          
SEQRES   4 A  581  ILE ALA VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG          
SEQRES   5 A  581  PRO GLU THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP          
SEQRES   6 A  581  LEU GLY ASP GLU THR LYS LYS LYS SER MET PHE ASP SER          
SEQRES   7 A  581  LYS ARG ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU          
SEQRES   8 A  581  LEU CYS GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR          
SEQRES   9 A  581  LEU LEU ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA          
SEQRES  10 A  581  ALA ALA LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP          
SEQRES  11 A  581  GLU ALA VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO          
SEQRES  12 A  581  ASP GLU PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA          
SEQRES  13 A  581  ALA ALA ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU          
SEQRES  14 A  581  LEU ARG ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU          
SEQRES  15 A  581  GLU GLN PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE          
SEQRES  16 A  581  ALA GLY VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET          
SEQRES  17 A  581  GLY LYS GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN          
SEQRES  18 A  581  ARG ILE TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN          
SEQRES  19 A  581  SER PRO LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU          
SEQRES  20 A  581  GLN LEU PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER          
SEQRES  21 A  581  THR SER ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS          
SEQRES  22 A  581  GLU ILE VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY          
SEQRES  23 A  581  LYS LEU GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL          
SEQRES  24 A  581  VAL ARG PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN          
SEQRES  25 A  581  GLN ALA LEU THR GLN THR GLY ARG LEU SER SER THR GLU          
SEQRES  26 A  581  PRO ASN LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY          
SEQRES  27 A  581  ARG LYS ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP          
SEQRES  28 A  581  TRP LEU ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU          
SEQRES  29 A  581  ARG VAL LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET          
SEQRES  30 A  581  GLU ALA PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR          
SEQRES  31 A  581  ALA MET ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR          
SEQRES  32 A  581  PRO ASN MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY          
SEQRES  33 A  581  ILE VAL TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN          
SEQRES  34 A  581  LEU ASN ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU          
SEQRES  35 A  581  ARG TYR PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET          
SEQRES  36 A  581  GLU ASN ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL          
SEQRES  37 A  581  THR THR LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE          
SEQRES  38 A  581  THR SER ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG          
SEQRES  39 A  581  MET ALA MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP          
SEQRES  40 A  581  ILE ILE LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU          
SEQRES  41 A  581  LYS GLU GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL          
SEQRES  42 A  581  HIS ASP GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET          
SEQRES  43 A  581  GLU ARG LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN          
SEQRES  44 A  581  ALA VAL THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS          
SEQRES  45 A  581  TYR GLY SER THR TRP TYR ASP ALA LYS                          
SEQRES   1 B   12   DA  DT  DC  DC  DG  DA  DG  DT  DC  DA  DG  DG              
SEQRES   1 C    9   DC  DC  DT  DG  DA  DC  DT  DC  DG                          
HET    GOL  A 901       6                                                       
HET    GOL  A 902       6                                                       
HET    GOL  A 903       6                                                       
HET    GOL  A 904       6                                                       
HET    GOL  A 905       6                                                       
HET    SO4  A 906       5                                                       
HET    SO4  A 907       5                                                       
HET    SO4  A 908       5                                                       
HET     DG  C 101      12                                                       
HET     CA  C 102       1                                                       
HETNAM     GOL GLYCEROL                                                         
HETNAM     SO4 SULFATE ION                                                      
HETNAM      DG 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE                               
HETNAM      CA CALCIUM ION                                                      
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   4  GOL    5(C3 H8 O3)                                                  
FORMUL   9  SO4    3(O4 S 2-)                                                   
FORMUL  12   DG    C10 H14 N5 O7 P                                              
FORMUL  13   CA    CA 2+                                                        
FORMUL  14  HOH   *242(H2 O)                                                    
HELIX    1   1 THR A  308  ALA A  313  5                                   6    
HELIX    2   2 ARG A  347  LEU A  352  1                                   6    
HELIX    3   3 ASP A  354  ASP A  363  1                                  10    
HELIX    4   4 ASP A  372  TRP A  382  1                                  11    
HELIX    5   5 LEU A  394  ASP A  402  1                                   9    
HELIX    6   6 PRO A  403  GLY A  406  5                                   4    
HELIX    7   7 ASP A  409  MET A  416  1                                   8    
HELIX    8   8 PRO A  424  GLY A  430  1                                   7    
HELIX    9   9 ASP A  439  ASN A  468  1                                  30    
HELIX   10  10 GLN A  470  LEU A  477  1                                   8    
HELIX   11  11 LEU A  477  GLY A  492  1                                  16    
HELIX   12  12 ASP A  496  ALA A  522  1                                  27    
HELIX   13  13 SER A  530  GLU A  540  1                                  11    
HELIX   14  14 SER A  557  ALA A  565  1                                   9    
HELIX   15  15 PRO A  566  HIS A  568  5                                   3    
HELIX   16  16 GLU A  569  ILE A  588  1                                  20    
HELIX   17  17 ILE A  588  VAL A  595  1                                   8    
HELIX   18  18 LEU A  630  LYS A  635  1                                   6    
HELIX   19  19 ILE A  636  GLN A  638  5                                   3    
HELIX   20  20 GLN A  656  GLU A  667  1                                  12    
HELIX   21  21 ASP A  668  ARG A  677  1                                  10    
HELIX   22  22 ASP A  680  GLN A  691  1                                  12    
HELIX   23  23 SER A  693  VAL A  697  5                                   5    
HELIX   24  24 THR A  698  ILE A  712  1                                  15    
HELIX   25  25 VAL A  713  GLY A  715  5                                   3    
HELIX   26  26 SER A  717  ASN A  726  1                                  10    
HELIX   27  27 SER A  728  PHE A  743  1                                  16    
HELIX   28  28 PHE A  743  GLY A  761  1                                  19    
HELIX   29  29 PRO A  774  SER A  778  5                                   5    
HELIX   30  30 ASN A  780  ARG A  819  1                                  40    
HELIX   31  31 GLU A  840  ALA A  855  1                                  16    
HELIX   32  32 THR A  871  ALA A  875  5                                   5    
SHEET    1   A 6 THR A 302  LEU A 303  0                                        
SHEET    2   A 6 GLY A 342  LEU A 346  1  O  ARG A 343   N  THR A 302           
SHEET    3   A 6 GLY A 334  ASN A 339 -1  N  VAL A 337   O  PHE A 344           
SHEET    4   A 6 LYS A 315  GLU A 321 -1  N  ALA A 317   O  VAL A 338           
SHEET    5   A 6 LYS A 367  MET A 370  1  O  SER A 369   N  LEU A 318           
SHEET    6   A 6 VAL A 390  ASP A 393  1  O  PHE A 392   N  MET A 370           
SHEET    1   B 3 LYS A 601  VAL A 602  0                                        
SHEET    2   B 3 VAL A 493  VAL A 495 -1  N  VAL A 493   O  VAL A 602           
SHEET    3   B 3 PHE A 640  VAL A 641 -1  O  VAL A 641   N  LYS A 494           
SHEET    1   C 2 ILE A 605  ASN A 607  0                                        
SHEET    2   C 2 SER A 617  THR A 619 -1  O  SER A 617   N  ASN A 607           
SHEET    1   D 4 HIS A 823  GLN A 827  0                                        
SHEET    2   D 4 GLU A 831  PRO A 837 -1  O  ILE A 833   N  LEU A 825           
SHEET    3   D 4 TRP A 647  TYR A 654 -1  N  PHE A 650   O  LEU A 834           
SHEET    4   D 4 VAL A 864  GLY A 869 -1  O  HIS A 867   N  ALA A 651           
SHEET    1   E 2 TYR A 762  THR A 764  0                                        
SHEET    2   E 2 ARG A 770  TYR A 772 -1  O  ARG A 771   N  VAL A 763           
LINK         OP1  DC C   8                CA    CA C 102     1555   1555  2.21  
CISPEP   1 GLU A  620    PRO A  621          0         0.72                     
SITE     1 AC1  9 GLU A 321  PHE A 371  ARG A 375  ASP A 409                    
SITE     2 AC1  9 VAL A 410  ASP A 425  LYS A 450  HOH A1154                    
SITE     3 AC1  9 HOH A1198                                                     
SITE     1 AC2  8 THR A 586  TYR A 587  LEU A 591  PRO A 621                    
SITE     2 AC2  8 ASN A 622  ASN A 625  HOH A1080   DA C   5                    
SITE     1 AC3  4 TRP A 382  PHE A 490  ALA A 491  LYS A 601                    
SITE     1 AC4  8 TYR A 327  ASP A 372  LYS A 374  PHE A 606                    
SITE     2 AC4  8 ASN A 607  GLN A 608  HOH A1027  HOH A1043                    
SITE     1 AC5  4 GLY A 715  ILE A 716  PHE A 740  MET A 750                    
SITE     1 AC6  4 MET A 299  ALA A 300  ARG A 343  ARG A 677                    
SITE     1 AC7  5 TYR A 714  PHE A 786  ARG A 789  HOH A1085                    
SITE     2 AC7  5  DC C   1                                                     
SITE     1 AC8  4 HIS A 682  ARG A 702  LYS A 706  HOH A1158                    
SITE     1 AC9  2  DC B   4   DG C   9                                          
SITE     1 BC1  4 ASN A 527  ASN A 529   DT C   7   DC C   8                    
CRYST1   88.573   93.387  105.928  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.011290  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.010708  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.009440        0.00000