PDB Short entry for 4DSL
HEADER    TRANSFERASE/DNA                         19-FEB-12   4DSL              
TITLE     CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM BACILLUS          
TITLE    2 STEAROTHERMOPHILUS WITH DUPLEX DNA AND CALCIUM                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE;                                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 298-876;                                          
COMPND   5 EC: 2.7.7.7;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: DNA (5'-D(*G*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3');      
COMPND  10 CHAIN: B;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: DNA (5'-                                                   
COMPND  14 D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3');           
COMPND  15 CHAIN: C;                                                            
COMPND  16 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS;                 
SOURCE   3 ORGANISM_TAXID: 1422;                                                
SOURCE   4 GENE: DPO1;                                                          
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);                                
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET28;                                    
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 OTHER_DETAILS: SYNTHESIZED DNA;                                      
SOURCE  13 MOL_ID: 3;                                                           
SOURCE  14 SYNTHETIC: YES;                                                      
SOURCE  15 OTHER_DETAILS: SYNTHESIZED DNA                                       
KEYWDS    DNA POLYMERASE, POLYMERIZATION FIDELITY, PYROPHOSPHOROLYSIS, PURINE   
KEYWDS   2 SELECTIVITY, BLUNT END EXTENSION, BASE STACKING, DNA SYNTHESIS,      
KEYWDS   3 TRANSFERASE-DNA COMPLEX                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.H.GAN,R.ABDUR,H.H.LIU,J.SHENG,J.CATON-WILLIANS,A.S.SOARES,Z.HUANG   
REVDAT   1   27-MAR-13 4DSL    0                                                
JRNL        AUTH   J.H.GAN,R.ABDUR,H.H.LIU,J.SHENG,J.CATON-WILLIANS,A.S.SOARES, 
JRNL        AUTH 2 Z.HUANG                                                      
JRNL        TITL   BIOCHEMICAL AND STRUCTURAL INSIGHTS INTO THE FIDELITY OF     
JRNL        TITL 2 BACILLUS STEAROTHERMOPHILUS DNA POLYMERASE                   
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.45 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.5.0109                                      
REMARK   3   AUTHORS     : MURSHUDOV,VAGIN,DODSON                               
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 30.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 91.5                           
REMARK   3   NUMBER OF REFLECTIONS             : 26904                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.229                           
REMARK   3   R VALUE            (WORKING SET) : 0.222                           
REMARK   3   FREE R VALUE                     : 0.286                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 10.100                          
REMARK   3   FREE R VALUE TEST SET COUNT      : 3027                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.45                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.51                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1630                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 76.21                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3440                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 180                          
REMARK   3   BIN FREE R VALUE                    : 0.3790                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 4649                                    
REMARK   3   NUCLEIC ACID ATOMS       : 489                                     
REMARK   3   HETEROGEN ATOMS          : 10                                      
REMARK   3   SOLVENT ATOMS            : 65                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 39.57                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 4.75000                                              
REMARK   3    B22 (A**2) : -3.35000                                             
REMARK   3    B33 (A**2) : -1.40000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.539         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.328         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.264         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.675        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.925                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.874                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  5288 ; 0.016 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  7249 ; 1.829 ; 2.094       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   578 ; 7.253 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   230 ;39.212 ;24.217       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   876 ;21.337 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    38 ;25.335 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   814 ; 0.112 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  3811 ; 0.007 ; 0.021       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2893 ; 0.654 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  4667 ; 1.263 ; 2.000       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  2395 ; 2.062 ; 3.000       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  2582 ; 3.301 ; 4.500       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 3                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A   298        A   876                          
REMARK   3    ORIGIN FOR THE GROUP (A): -13.8224  -8.6319  25.6825              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0063 T22:   0.0377                                     
REMARK   3      T33:   0.0632 T12:   0.0039                                     
REMARK   3      T13:   0.0132 T23:  -0.0056                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.1022 L22:   0.2332                                     
REMARK   3      L33:   0.3266 L12:  -0.0433                                     
REMARK   3      L13:  -0.0134 L23:  -0.1116                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.0024 S12:  -0.0052 S13:   0.0090                       
REMARK   3      S21:  -0.0058 S22:  -0.0087 S23:  -0.0105                       
REMARK   3      S31:   0.0101 S32:   0.0363 S33:   0.0110                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   B     3        B    13                          
REMARK   3    ORIGIN FOR THE GROUP (A): -27.9303 -16.8387  19.3960              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.3711 T22:   0.2150                                     
REMARK   3      T33:   0.0926 T12:  -0.0030                                     
REMARK   3      T13:   0.0322 T23:   0.0848                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   0.1807 L22:   0.1462                                     
REMARK   3      L33:   3.0202 L12:  -0.1449                                     
REMARK   3      L13:   0.7006 L23:  -0.6534                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0805 S12:  -0.0757 S13:  -0.0038                       
REMARK   3      S21:  -0.1887 S22:  -0.0559 S23:  -0.0268                       
REMARK   3      S31:   0.7999 S32:  -0.1407 S33:  -0.0246                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 3                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   C     5        C    15                          
REMARK   3    ORIGIN FOR THE GROUP (A): -27.8173 -17.6244  19.9439              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.3374 T22:   0.0424                                     
REMARK   3      T33:   0.1487 T12:  -0.0958                                     
REMARK   3      T13:  -0.0435 T23:   0.0313                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   6.1223 L22:   0.5577                                     
REMARK   3      L33:   2.4378 L12:   0.1331                                     
REMARK   3      L13:   1.3453 L23:  -1.0563                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.3855 S12:   0.0908 S13:  -0.1484                       
REMARK   3      S21:  -0.2522 S22:   0.1317 S23:   0.2295                       
REMARK   3      S31:   0.5400 S32:  -0.2225 S33:  -0.5172                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 4DSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-12.                  
REMARK 100 THE RCSB ID CODE IS RCSB070729.                                      
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 18-FEB-11                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ALS                                
REMARK 200  BEAMLINE                       : 12.3.1                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.0000                             
REMARK 200  MONOCHROMATOR                  : MIRROR                             
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315                   
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : HKL-2000                           
REMARK 200  DATA SCALING SOFTWARE          : HKL-2000                           
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 30107                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.450                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 30.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 92.1                               
REMARK 200  DATA REDUNDANCY                : 2.700                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.11200                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 7.2000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.54                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 79.0                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.00                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.38600                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 1.900                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASES                                                
REMARK 200 STARTING MODEL: PDB 3HT3                                             
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 57.20                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 2.0 M AMMONIUM       
REMARK 280  SULFATE, VAPOR DIFFUSION, SITTING DROP                              
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       44.17000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       52.30900            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       46.79350            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       52.30900            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       44.17000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       46.79350            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 29010 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465      DG B     1                                                      
REMARK 465      DT C     1                                                      
REMARK 465      DC C     2                                                      
REMARK 465      DA C     3                                                      
REMARK 465      DC C     4                                                      
REMARK 465      DC C    17                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470      DG B   2    P    OP1  OP2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DC B   3   C3' -  O3' -  P   ANGL. DEV. =  10.0 DEGREES          
REMARK 500     DG B   8   C3' -  C2' -  C1' ANGL. DEV. =  -5.2 DEGREES          
REMARK 500     DG B   8   O4' -  C1' -  N9  ANGL. DEV. =   2.4 DEGREES          
REMARK 500     DG B   9   O4' -  C1' -  C2' ANGL. DEV. =   4.1 DEGREES          
REMARK 500     DA B  10   O5' -  C5' -  C4' ANGL. DEV. =  -6.7 DEGREES          
REMARK 500     DA B  10   O4' -  C1' -  N9  ANGL. DEV. =   5.9 DEGREES          
REMARK 500     DC B  11   O4' -  C4' -  C3' ANGL. DEV. =  -3.2 DEGREES          
REMARK 500     DC B  11   O4' -  C1' -  N1  ANGL. DEV. =   4.1 DEGREES          
REMARK 500     DT B  12   O4' -  C1' -  N1  ANGL. DEV. =   2.5 DEGREES          
REMARK 500     DT B  12   C4  -  C5  -  C7  ANGL. DEV. =   5.3 DEGREES          
REMARK 500     DT B  12   C6  -  C5  -  C7  ANGL. DEV. =  -4.8 DEGREES          
REMARK 500     DC B  13   O4' -  C1' -  N1  ANGL. DEV. =   8.3 DEGREES          
REMARK 500     DA C   6   N1  -  C2  -  N3  ANGL. DEV. =  -3.6 DEGREES          
REMARK 500     DG C   7   O4' -  C1' -  N9  ANGL. DEV. =   3.3 DEGREES          
REMARK 500     DT C   8   C4' -  C3' -  C2' ANGL. DEV. =   5.5 DEGREES          
REMARK 500     DT C   8   O4' -  C1' -  N1  ANGL. DEV. =   3.4 DEGREES          
REMARK 500     DC C   9   O5' -  C5' -  C4' ANGL. DEV. =  -6.2 DEGREES          
REMARK 500     DC C   9   O4' -  C1' -  N1  ANGL. DEV. =   4.4 DEGREES          
REMARK 500     DC C  10   O4' -  C1' -  N1  ANGL. DEV. =   2.9 DEGREES          
REMARK 500     DT C  11   C4  -  C5  -  C7  ANGL. DEV. =   3.7 DEGREES          
REMARK 500     DT C  11   C6  -  C5  -  C7  ANGL. DEV. =  -3.6 DEGREES          
REMARK 500     DT C  13   O4' -  C1' -  N1  ANGL. DEV. =   2.4 DEGREES          
REMARK 500     DA C  14   O4' -  C1' -  N9  ANGL. DEV. =   3.6 DEGREES          
REMARK 500     DT C  13   C3' -  O3' -  P   ANGL. DEV. =  11.0 DEGREES          
REMARK 500     DG C  15   O4' -  C1' -  N9  ANGL. DEV. =   4.1 DEGREES          
REMARK 500     DC C  16   O4' -  C1' -  N1  ANGL. DEV. =   2.9 DEGREES          
REMARK 500     DG C  15   C3' -  O3' -  P   ANGL. DEV. =   8.5 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A 339     -157.95   -153.05                                   
REMARK 500    ASP A 402       82.87   -173.15                                   
REMARK 500    LEU A 477      -90.83   -112.94                                   
REMARK 500    PRO A 531       10.33    -59.89                                   
REMARK 500    GLU A 540      -65.33   -121.37                                   
REMARK 500    HIS A 568      139.96   -175.87                                   
REMARK 500    LEU A 616     -174.90    -69.96                                   
REMARK 500    GLU A 620       78.47     33.65                                   
REMARK 500    ASN A 625       41.79   -148.58                                   
REMARK 500    ILE A 628      -47.08   -144.71                                   
REMARK 500    GLN A 691       76.66     70.38                                   
REMARK 500    LEU A 725      -70.21    -61.45                                   
REMARK 500    ASN A 726       31.81    131.05                                   
REMARK 500    HIS A 768       23.90     86.55                                   
REMARK 500    ASP A 775       25.52    -71.48                                   
REMARK 500    HIS A 829      -61.88     78.29                                   
REMARK 500    HIS A 867      133.59    178.89                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 901                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 902                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 3HT3   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM                  
REMARK 900 BACILLUS STEAROTHERMOPHILUS V713P MUTANT BOUND TO G:DCTP             
REMARK 900 RELATED ID: 4DSI   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF FRAGMENT DNA POLYMERASE I FROM                  
REMARK 900 BACILLUS STEAROTHERMOPHILUS WUTH DUPLEX DNA, SE-DGTP AND             
REMARK 900 CALCIUM                                                              
REMARK 900 RELATED ID: 4DSJ   RELATED DB: PDB                                   
REMARK 900 DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS WUTH               
REMARK 900 DUPLEX DNA, DGTP AND CALCIUM                                         
REMARK 900 RELATED ID: 4DSK   RELATED DB: PDB                                   
REMARK 900 DNA POLYMERASE I FROM BACILLUS STEAROTHERMOPHILUS WUTH               
REMARK 900 DUPLEX DNA, PPI AND CALCIUM                                          
DBREF  4DSL A  298   876  UNP    D9N168   D9N168_GEOSE     1    579             
DBREF  4DSL B    1    13  PDB    4DSL     4DSL             1     13             
DBREF  4DSL C    1    17  PDB    4DSL     4DSL             1     17             
SEQADV 4DSL ASP A  598  UNP  D9N168    ALA   301 ENGINEERED MUTATION            
SEQADV 4DSL VAL A  713  UNP  D9N168    PRO   416 ENGINEERED MUTATION            
SEQRES   1 A  579  LYS MET ALA PHE THR LEU ALA ASP ARG VAL THR GLU GLU          
SEQRES   2 A  579  MET LEU ALA ASP LYS ALA ALA LEU VAL VAL GLU VAL VAL          
SEQRES   3 A  579  GLU GLU ASN TYR HIS ASP ALA PRO ILE VAL GLY ILE ALA          
SEQRES   4 A  579  VAL VAL ASN GLU HIS GLY ARG PHE PHE LEU ARG PRO GLU          
SEQRES   5 A  579  THR ALA LEU ALA ASP PRO GLN PHE VAL ALA TRP LEU GLY          
SEQRES   6 A  579  ASP GLU THR LYS LYS LYS SER MET PHE ASP SER LYS ARG          
SEQRES   7 A  579  ALA ALA VAL ALA LEU LYS TRP LYS GLY ILE GLU LEU CYS          
SEQRES   8 A  579  GLY VAL SER PHE ASP LEU LEU LEU ALA ALA TYR LEU LEU          
SEQRES   9 A  579  ASP PRO ALA GLN GLY VAL ASP ASP VAL ALA ALA ALA ALA          
SEQRES  10 A  579  LYS MET LYS GLN TYR GLU ALA VAL ARG PRO ASP GLU ALA          
SEQRES  11 A  579  VAL TYR GLY LYS GLY ALA LYS ARG ALA VAL PRO ASP GLU          
SEQRES  12 A  579  PRO VAL LEU ALA GLU HIS LEU VAL ARG LYS ALA ALA ALA          
SEQRES  13 A  579  ILE TRP GLU LEU GLU ARG PRO PHE LEU ASP GLU LEU ARG          
SEQRES  14 A  579  ARG ASN GLU GLN ASP ARG LEU LEU VAL GLU LEU GLU GLN          
SEQRES  15 A  579  PRO LEU SER SER ILE LEU ALA GLU MET GLU PHE ALA GLY          
SEQRES  16 A  579  VAL LYS VAL ASP THR LYS ARG LEU GLU GLN MET GLY LYS          
SEQRES  17 A  579  GLU LEU ALA GLU GLN LEU GLY THR VAL GLU GLN ARG ILE          
SEQRES  18 A  579  TYR GLU LEU ALA GLY GLN GLU PHE ASN ILE ASN SER PRO          
SEQRES  19 A  579  LYS GLN LEU GLY VAL ILE LEU PHE GLU LYS LEU GLN LEU          
SEQRES  20 A  579  PRO VAL LEU LYS LYS THR LYS THR GLY TYR SER THR SER          
SEQRES  21 A  579  ALA ASP VAL LEU GLU LYS LEU ALA PRO TYR HIS GLU ILE          
SEQRES  22 A  579  VAL GLU ASN ILE LEU HIS TYR ARG GLN LEU GLY LYS LEU          
SEQRES  23 A  579  GLN SER THR TYR ILE GLU GLY LEU LEU LYS VAL VAL ARG          
SEQRES  24 A  579  PRO ASP THR LYS LYS VAL HIS THR ILE PHE ASN GLN ALA          
SEQRES  25 A  579  LEU THR GLN THR GLY ARG LEU SER SER THR GLU PRO ASN          
SEQRES  26 A  579  LEU GLN ASN ILE PRO ILE ARG LEU GLU GLU GLY ARG LYS          
SEQRES  27 A  579  ILE ARG GLN ALA PHE VAL PRO SER GLU SER ASP TRP LEU          
SEQRES  28 A  579  ILE PHE ALA ALA ASP TYR SER GLN ILE GLU LEU ARG VAL          
SEQRES  29 A  579  LEU ALA HIS ILE ALA GLU ASP ASP ASN LEU MET GLU ALA          
SEQRES  30 A  579  PHE ARG ARG ASP LEU ASP ILE HIS THR LYS THR ALA MET          
SEQRES  31 A  579  ASP ILE PHE GLN VAL SER GLU ASP GLU VAL THR PRO ASN          
SEQRES  32 A  579  MET ARG ARG GLN ALA LYS ALA VAL ASN PHE GLY ILE VAL          
SEQRES  33 A  579  TYR GLY ILE SER ASP TYR GLY LEU ALA GLN ASN LEU ASN          
SEQRES  34 A  579  ILE SER ARG LYS GLU ALA ALA GLU PHE ILE GLU ARG TYR          
SEQRES  35 A  579  PHE GLU SER PHE PRO GLY VAL LYS ARG TYR MET GLU ASN          
SEQRES  36 A  579  ILE VAL GLN GLU ALA LYS GLN LYS GLY TYR VAL THR THR          
SEQRES  37 A  579  LEU LEU HIS ARG ARG ARG TYR LEU PRO ASP ILE THR SER          
SEQRES  38 A  579  ARG ASN PHE ASN VAL ARG SER PHE ALA GLU ARG MET ALA          
SEQRES  39 A  579  MET ASN THR PRO ILE GLN GLY SER ALA ALA ASP ILE ILE          
SEQRES  40 A  579  LYS LYS ALA MET ILE ASP LEU ASN ALA ARG LEU LYS GLU          
SEQRES  41 A  579  GLU ARG LEU GLN ALA HIS LEU LEU LEU GLN VAL HIS ASP          
SEQRES  42 A  579  GLU LEU ILE LEU GLU ALA PRO LYS GLU GLU MET GLU ARG          
SEQRES  43 A  579  LEU CYS ARG LEU VAL PRO GLU VAL MET GLU GLN ALA VAL          
SEQRES  44 A  579  THR LEU ARG VAL PRO LEU LYS VAL ASP TYR HIS TYR GLY          
SEQRES  45 A  579  SER THR TRP TYR ASP ALA LYS                                  
SEQRES   1 B   13   DG  DG  DC  DT  DA  DC  DA  DG  DG  DA  DC  DT  DC          
SEQRES   1 C   17   DT  DC  DA  DC  DG  DA  DG  DT  DC  DC  DT  DG  DT          
SEQRES   2 C   17   DA  DG  DC  DC                                              
HET    SO4  A 901       5                                                       
HET    SO4  A 902       5                                                       
HETNAM     SO4 SULFATE ION                                                      
FORMUL   4  SO4    2(O4 S 2-)                                                   
FORMUL   6  HOH   *65(H2 O)                                                     
HELIX    1   1 ARG A  347  LEU A  352  1                                   6    
HELIX    2   2 ASP A  354  GLY A  362  1                                   9    
HELIX    3   3 ASP A  372  LYS A  383  1                                  12    
HELIX    4   4 LEU A  394  ASP A  402  1                                   9    
HELIX    5   5 PRO A  403  GLY A  406  5                                   4    
HELIX    6   6 ASP A  409  MET A  416  1                                   8    
HELIX    7   7 ASP A  425  GLY A  430  1                                   6    
HELIX    8   8 ASP A  439  ASN A  468  1                                  30    
HELIX    9   9 GLN A  470  GLU A  476  1                                   7    
HELIX   10  10 LEU A  477  GLY A  492  1                                  16    
HELIX   11  11 ASP A  496  GLY A  523  1                                  28    
HELIX   12  12 LYS A  532  GLU A  540  1                                   9    
HELIX   13  13 SER A  557  GLU A  562  1                                   6    
HELIX   14  14 LEU A  564  HIS A  568  5                                   5    
HELIX   15  15 GLU A  569  TYR A  587  1                                  19    
HELIX   16  16 TYR A  587  VAL A  595  1                                   9    
HELIX   17  17 LEU A  630  LYS A  635  1                                   6    
HELIX   18  18 ILE A  636  GLN A  638  5                                   3    
HELIX   19  19 GLN A  656  GLU A  667  1                                  12    
HELIX   20  20 ASP A  668  ARG A  677  1                                  10    
HELIX   21  21 ASP A  680  GLN A  691  1                                  12    
HELIX   22  22 SER A  693  VAL A  697  5                                   5    
HELIX   23  23 THR A  698  TYR A  714  1                                  17    
HELIX   24  24 SER A  717  ASN A  726  1                                  10    
HELIX   25  25 GLU A  731  PHE A  743  1                                  13    
HELIX   26  26 PHE A  743  GLY A  761  1                                  19    
HELIX   27  27 PRO A  774  THR A  777  5                                   4    
HELIX   28  28 ASN A  780  GLU A  818  1                                  39    
HELIX   29  29 GLU A  840  ALA A  855  1                                  16    
HELIX   30  30 THR A  871  ALA A  875  5                                   5    
SHEET    1   A 6 THR A 302  LEU A 303  0                                        
SHEET    2   A 6 ARG A 343  LEU A 346  1  O  ARG A 343   N  THR A 302           
SHEET    3   A 6 ILE A 332  ASN A 339 -1  N  VAL A 337   O  PHE A 344           
SHEET    4   A 6 LYS A 315  VAL A 322 -1  N  ALA A 317   O  VAL A 338           
SHEET    5   A 6 LYS A 367  MET A 370  1  O  SER A 369   N  LEU A 318           
SHEET    6   A 6 VAL A 390  ASP A 393  1  O  PHE A 392   N  MET A 370           
SHEET    1   B 3 LYS A 601  VAL A 602  0                                        
SHEET    2   B 3 VAL A 493  VAL A 495 -1  N  VAL A 493   O  VAL A 602           
SHEET    3   B 3 PHE A 640  VAL A 641 -1  O  VAL A 641   N  LYS A 494           
SHEET    1   C 2 LYS A 549  THR A 550  0                                        
SHEET    2   C 2 GLY A 553  TYR A 554 -1  O  GLY A 553   N  THR A 550           
SHEET    1   D 2 ILE A 605  ASN A 607  0                                        
SHEET    2   D 2 SER A 617  THR A 619 -1  O  THR A 619   N  ILE A 605           
SHEET    1   E 4 HIS A 823  GLN A 827  0                                        
SHEET    2   E 4 GLU A 831  PRO A 837 -1  O  ILE A 833   N  LEU A 825           
SHEET    3   E 4 TRP A 647  TYR A 654 -1  N  LEU A 648   O  ALA A 836           
SHEET    4   E 4 VAL A 864  GLY A 869 -1  O  HIS A 867   N  ALA A 651           
SHEET    1   F 2 TYR A 762  THR A 764  0                                        
SHEET    2   F 2 ARG A 770  TYR A 772 -1  O  ARG A 771   N  VAL A 763           
CISPEP   1 GLU A  620    PRO A  621          0        -3.66                     
SITE     1 AC1  5 LYS A 298  MET A 299  ALA A 300  ARG A 343                    
SITE     2 AC1  5 ARG A 677                                                     
SITE     1 AC2  3 HIS A 682  ARG A 702  LYS A 706                               
CRYST1   88.340   93.587  104.618  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.011320  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.010685  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.009559        0.00000