PDB Short entry for 4DY0 HEADER HYDROLASE INHIBITOR 28-FEB-12 4DY0 TITLE CRYSTAL STRUCTURE OF NATIVE PROTEASE NEXIN-1 WITH HEPARIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLIA-DERIVED NEXIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GDN, PEPTIDASE INHIBITOR 7, PI-7, PROTEASE NEXIN 1, PN-1, COMPND 5 PROTEASE NEXIN I, SERPIN E2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SERPINE2, PI7, PN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERPIN, PROTEASE INHIBITOR, THROMBIN, CELL SURFACE, HYDROLASE KEYWDS 2 INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.A.HUNTINGTON,W.LI REVDAT 4 13-MAR-24 4DY0 1 COMPND SOURCE REVDAT 3 28-FEB-24 4DY0 1 HETSYN REVDAT 2 29-JUL-20 4DY0 1 COMPND SOURCE REMARK HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 15-AUG-12 4DY0 0 JRNL AUTH W.LI,J.A.HUNTINGTON JRNL TITL CRYSTAL STRUCTURES OF PROTEASE NEXIN-1 IN COMPLEX WITH JRNL TITL 2 HEPARIN AND THROMBIN SUGGEST A 2-STEP RECOGNITION MECHANISM. JRNL REF BLOOD V. 120 459 2012 JRNL REFN ISSN 0006-4971 JRNL PMID 22618708 JRNL DOI 10.1182/BLOOD-2012-03-415869 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0098 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.35000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.285 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.461 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5764 ; 0.004 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7852 ; 0.835 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 727 ; 5.035 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;34.323 ;24.818 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 951 ;14.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.373 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 940 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4226 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8289 -51.7216 49.4153 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 0.1568 REMARK 3 T33: 0.0454 T12: -0.0076 REMARK 3 T13: -0.0494 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 1.0879 L22: 0.5397 REMARK 3 L33: 0.6000 L12: -0.2717 REMARK 3 L13: -0.5233 L23: 0.5301 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.0590 S13: -0.0691 REMARK 3 S21: 0.0782 S22: -0.0557 S23: -0.0077 REMARK 3 S31: 0.0480 S32: -0.0704 S33: 0.0198 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9202 -62.8015 59.5346 REMARK 3 T TENSOR REMARK 3 T11: 0.2932 T22: 0.2495 REMARK 3 T33: 0.1204 T12: 0.0282 REMARK 3 T13: -0.0075 T23: 0.1301 REMARK 3 L TENSOR REMARK 3 L11: 1.5540 L22: 2.6871 REMARK 3 L33: 0.7067 L12: -0.6109 REMARK 3 L13: -0.1056 L23: 1.2959 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: -0.2815 S13: -0.3381 REMARK 3 S21: 0.5459 S22: -0.0227 S23: 0.2007 REMARK 3 S31: 0.3133 S32: 0.0510 S33: 0.0928 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 25.5897 -46.9850 68.1039 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.4388 REMARK 3 T33: 0.0511 T12: 0.0675 REMARK 3 T13: -0.0389 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 5.9627 L22: 0.5199 REMARK 3 L33: 6.9141 L12: 1.2434 REMARK 3 L13: -3.7417 L23: 0.2179 REMARK 3 S TENSOR REMARK 3 S11: 0.0399 S12: -0.2504 S13: 0.4811 REMARK 3 S21: 0.0498 S22: 0.1566 S23: 0.1163 REMARK 3 S31: 0.0341 S32: 0.3765 S33: -0.1965 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7375 -44.6098 66.2342 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.4568 REMARK 3 T33: 0.0671 T12: -0.0317 REMARK 3 T13: 0.0172 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 3.8048 L22: 13.8958 REMARK 3 L33: 2.9426 L12: 4.7740 REMARK 3 L13: -1.1403 L23: -2.7118 REMARK 3 S TENSOR REMARK 3 S11: 0.2571 S12: -0.8454 S13: -0.1443 REMARK 3 S21: 1.0372 S22: 0.0562 S23: -0.1385 REMARK 3 S31: -0.3073 S32: 0.4079 S33: -0.3133 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8737 -43.2238 61.5994 REMARK 3 T TENSOR REMARK 3 T11: 0.2695 T22: 0.4508 REMARK 3 T33: 0.2297 T12: -0.1242 REMARK 3 T13: -0.2114 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 5.2860 L22: 11.0343 REMARK 3 L33: 3.7302 L12: -6.5353 REMARK 3 L13: -3.3296 L23: 5.2507 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: -0.2072 S13: -0.1126 REMARK 3 S21: 0.6527 S22: 0.1162 S23: -0.6126 REMARK 3 S31: -0.1509 S32: 0.5256 S33: -0.0698 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4431 -38.1998 54.9347 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.4988 REMARK 3 T33: 0.1048 T12: -0.0052 REMARK 3 T13: 0.0352 T23: -0.0874 REMARK 3 L TENSOR REMARK 3 L11: 12.4528 L22: 47.1524 REMARK 3 L33: 3.6413 L12: -22.0135 REMARK 3 L13: -5.8906 L23: 13.0652 REMARK 3 S TENSOR REMARK 3 S11: 0.5422 S12: -0.2289 S13: 0.0795 REMARK 3 S21: -0.9548 S22: -0.4883 S23: -0.0757 REMARK 3 S31: -0.2506 S32: -0.1526 S33: -0.0539 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 155 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8402 -43.3346 57.3908 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.2486 REMARK 3 T33: 0.1655 T12: -0.0172 REMARK 3 T13: -0.0081 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 3.8267 L22: 4.8581 REMARK 3 L33: 2.5149 L12: -2.8086 REMARK 3 L13: -1.7755 L23: 2.6536 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: -0.4734 S13: 0.3340 REMARK 3 S21: -0.0254 S22: 0.0710 S23: 0.0032 REMARK 3 S31: -0.2989 S32: 0.3252 S33: -0.1246 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 40.0633 -62.0103 34.8469 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.0151 REMARK 3 T33: 0.0660 T12: 0.0044 REMARK 3 T13: -0.0558 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.4671 L22: 1.2864 REMARK 3 L33: 2.4766 L12: -0.4795 REMARK 3 L13: -0.4935 L23: -1.1605 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.1341 S13: -0.0940 REMARK 3 S21: -0.0480 S22: 0.0169 S23: -0.0670 REMARK 3 S31: 0.2431 S32: 0.0854 S33: -0.0523 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 252 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8082 -68.4731 36.0022 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.0647 REMARK 3 T33: 0.0670 T12: -0.0289 REMARK 3 T13: -0.0833 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 4.5614 L22: 4.7740 REMARK 3 L33: 1.6361 L12: -0.9958 REMARK 3 L13: -1.2710 L23: 0.0859 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.0644 S13: -0.1187 REMARK 3 S21: -0.1489 S22: 0.0457 S23: 0.2808 REMARK 3 S31: 0.2763 S32: -0.0877 S33: -0.0285 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6712 -44.5869 51.1357 REMARK 3 T TENSOR REMARK 3 T11: 0.0448 T22: 0.1382 REMARK 3 T33: 0.0867 T12: 0.0073 REMARK 3 T13: -0.0117 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 2.6329 L22: 0.4272 REMARK 3 L33: 1.1128 L12: -0.5572 REMARK 3 L13: -1.2504 L23: -0.0436 REMARK 3 S TENSOR REMARK 3 S11: 0.1606 S12: -0.2930 S13: 0.2726 REMARK 3 S21: 0.0140 S22: 0.0551 S23: -0.0722 REMARK 3 S31: -0.1087 S32: 0.0338 S33: -0.2156 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 310 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1429 -56.7989 43.5912 REMARK 3 T TENSOR REMARK 3 T11: 0.0636 T22: 0.0733 REMARK 3 T33: 0.0348 T12: -0.0029 REMARK 3 T13: -0.0388 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.9166 L22: 0.8134 REMARK 3 L33: 1.6586 L12: -0.0764 REMARK 3 L13: -0.5590 L23: 0.4635 REMARK 3 S TENSOR REMARK 3 S11: 0.0646 S12: -0.2215 S13: -0.0713 REMARK 3 S21: -0.0042 S22: 0.0194 S23: -0.0480 REMARK 3 S31: 0.1842 S32: 0.1190 S33: -0.0840 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 34 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2122 -42.8341 26.3124 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.0339 REMARK 3 T33: 0.1154 T12: 0.0153 REMARK 3 T13: 0.0267 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 2.7062 L22: 3.3897 REMARK 3 L33: 3.9165 L12: 2.2058 REMARK 3 L13: 2.3385 L23: 2.5239 REMARK 3 S TENSOR REMARK 3 S11: 0.0651 S12: -0.2038 S13: -0.1325 REMARK 3 S21: 0.1073 S22: -0.1470 S23: 0.1010 REMARK 3 S31: 0.2573 S32: 0.0014 S33: 0.0819 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 35 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3963 -45.5949 11.6563 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.0590 REMARK 3 T33: 0.1155 T12: -0.0276 REMARK 3 T13: -0.0827 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.5485 L22: 0.5243 REMARK 3 L33: 1.0750 L12: -0.8741 REMARK 3 L13: -1.1015 L23: 0.6358 REMARK 3 S TENSOR REMARK 3 S11: 0.0807 S12: 0.1571 S13: -0.1624 REMARK 3 S21: -0.0848 S22: -0.0957 S23: 0.1261 REMARK 3 S31: 0.0288 S32: -0.1959 S33: 0.0151 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 97 B 120 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2936 -43.4806 0.7657 REMARK 3 T TENSOR REMARK 3 T11: 0.2296 T22: 0.0752 REMARK 3 T33: 0.0215 T12: 0.0460 REMARK 3 T13: -0.0622 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 4.8678 L22: 4.1956 REMARK 3 L33: 3.1420 L12: 0.8845 REMARK 3 L13: -3.7498 L23: 0.2698 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: 0.2184 S13: -0.0032 REMARK 3 S21: -0.6429 S22: -0.1003 S23: 0.0823 REMARK 3 S31: -0.1687 S32: -0.1888 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 121 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8816 -29.6002 6.3392 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.0431 REMARK 3 T33: 0.0855 T12: -0.0405 REMARK 3 T13: -0.0079 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 3.3876 L22: 5.2213 REMARK 3 L33: 4.7030 L12: -1.2394 REMARK 3 L13: -1.8117 L23: 0.9500 REMARK 3 S TENSOR REMARK 3 S11: -0.1876 S12: 0.2643 S13: 0.3166 REMARK 3 S21: -0.3648 S22: 0.0997 S23: 0.1373 REMARK 3 S31: -0.0884 S32: 0.1013 S33: 0.0879 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 147 B 157 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3701 -31.1284 13.0309 REMARK 3 T TENSOR REMARK 3 T11: 0.1394 T22: 0.0127 REMARK 3 T33: 0.0627 T12: 0.0013 REMARK 3 T13: -0.0202 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 32.0009 L22: 21.1997 REMARK 3 L33: 3.6531 L12: -12.4637 REMARK 3 L13: -8.4833 L23: 4.2996 REMARK 3 S TENSOR REMARK 3 S11: 0.1790 S12: -0.1878 S13: -0.5572 REMARK 3 S21: -0.0780 S22: -0.1122 S23: -0.4517 REMARK 3 S31: 0.2149 S32: -0.0265 S33: -0.0668 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 158 B 192 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7532 -26.2750 24.5966 REMARK 3 T TENSOR REMARK 3 T11: 0.0978 T22: 0.0233 REMARK 3 T33: 0.1546 T12: 0.0019 REMARK 3 T13: 0.0571 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 1.5551 L22: 1.4973 REMARK 3 L33: 1.0431 L12: -1.2445 REMARK 3 L13: -0.1376 L23: 0.7194 REMARK 3 S TENSOR REMARK 3 S11: 0.2076 S12: -0.0067 S13: 0.1585 REMARK 3 S21: -0.2565 S22: -0.0600 S23: -0.1126 REMARK 3 S31: -0.2445 S32: -0.0841 S33: -0.1475 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 193 B 251 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2485 -33.0906 36.1009 REMARK 3 T TENSOR REMARK 3 T11: 0.0099 T22: 0.0595 REMARK 3 T33: 0.0891 T12: -0.0140 REMARK 3 T13: 0.0049 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.8557 L22: 0.6007 REMARK 3 L33: 1.0940 L12: -0.1179 REMARK 3 L13: 0.1367 L23: 0.1708 REMARK 3 S TENSOR REMARK 3 S11: 0.0678 S12: -0.1673 S13: -0.0196 REMARK 3 S21: 0.0302 S22: -0.0048 S23: 0.0453 REMARK 3 S31: -0.0166 S32: -0.1100 S33: -0.0630 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 252 B 295 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2460 -38.2025 28.9896 REMARK 3 T TENSOR REMARK 3 T11: 0.0388 T22: 0.0541 REMARK 3 T33: 0.0605 T12: 0.0119 REMARK 3 T13: -0.0399 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.6500 L22: 1.4986 REMARK 3 L33: 0.9119 L12: -0.7884 REMARK 3 L13: -1.0569 L23: 0.4833 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.0940 S13: 0.0504 REMARK 3 S21: -0.0190 S22: 0.1024 S23: 0.0797 REMARK 3 S31: 0.0552 S32: 0.0274 S33: -0.1054 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 296 B 315 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7725 -51.6609 6.9955 REMARK 3 T TENSOR REMARK 3 T11: 0.1549 T22: 0.0238 REMARK 3 T33: 0.0540 T12: 0.0024 REMARK 3 T13: 0.0208 T23: -0.0322 REMARK 3 L TENSOR REMARK 3 L11: 4.6975 L22: 3.2771 REMARK 3 L33: 6.8884 L12: -0.4919 REMARK 3 L13: 2.0316 L23: -0.1452 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: 0.2452 S13: -0.2091 REMARK 3 S21: -0.4614 S22: 0.0094 S23: -0.1318 REMARK 3 S31: 0.3041 S32: 0.1359 S33: -0.0841 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 316 B 352 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5164 -28.5795 28.3097 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0256 REMARK 3 T33: 0.0943 T12: 0.0287 REMARK 3 T13: 0.0178 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.8275 L22: 0.0892 REMARK 3 L33: 0.2956 L12: 0.2589 REMARK 3 L13: -0.1977 L23: -0.0968 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: 0.0270 S13: 0.1144 REMARK 3 S21: 0.0257 S22: 0.0047 S23: 0.0413 REMARK 3 S31: -0.0930 S32: -0.0357 S33: -0.0801 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 353 B 379 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0909 -33.9009 29.1465 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.0484 REMARK 3 T33: 0.1272 T12: -0.0110 REMARK 3 T13: 0.0033 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 0.8969 L22: 1.0309 REMARK 3 L33: 2.8447 L12: -0.1362 REMARK 3 L13: -0.5277 L23: 1.6680 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: -0.1369 S13: -0.0619 REMARK 3 S21: 0.0407 S22: -0.0593 S23: -0.0236 REMARK 3 S31: 0.0546 S32: -0.0606 S33: -0.0048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4DY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000070924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 68.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : 0.12800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM NAAC, 12% PEG3350, 0.2M REMARK 280 (NH4)2SO4, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.77500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.32500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.38750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.32500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.16250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.32500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.38750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.32500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.16250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 46.77500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 70.32500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -70.32500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -23.38750 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 GLY A 311 REMARK 465 SER A 312 REMARK 465 GLU A 313 REMARK 465 LYS A 334 REMARK 465 ALA A 335 REMARK 465 SER A 336 REMARK 465 ALA A 337 REMARK 465 ALA A 338 REMARK 465 THR A 339 REMARK 465 THR A 340 REMARK 465 ALA A 341 REMARK 465 ILE A 342 REMARK 465 LEU A 343 REMARK 465 ILE A 344 REMARK 465 ALA A 345 REMARK 465 SER B 1 REMARK 465 HIS B 2 REMARK 465 PHE B 3 REMARK 465 ALA B 335 REMARK 465 SER B 336 REMARK 465 ALA B 337 REMARK 465 ALA B 338 REMARK 465 THR B 339 REMARK 465 THR B 340 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 56 CD CE NZ REMARK 470 ARG A 63 NE CZ NH1 NH2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LYS A 75 CD CE NZ REMARK 470 LYS A 78 CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 84 CE NZ REMARK 470 LYS A 86 CE NZ REMARK 470 LYS A 98 NZ REMARK 470 ASN A 99 CG OD1 ND2 REMARK 470 SER A 101 OG REMARK 470 LYS A 112 CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 SER A 129 OG REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 144 OD1 OD2 REMARK 470 ASN A 148 OD1 ND2 REMARK 470 VAL A 158 CG1 CG2 REMARK 470 ARG A 161 NE CZ NH1 NH2 REMARK 470 LYS A 184 CD CE NZ REMARK 470 LYS A 185 CE NZ REMARK 470 LYS A 256 CD CE NZ REMARK 470 SER A 300 OG REMARK 470 LYS A 307 CE NZ REMARK 470 THR A 310 OG1 CG2 REMARK 470 ASN A 314 CG OD1 ND2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 SER A 348 OG REMARK 470 LYS B 56 CD CE NZ REMARK 470 ARG B 63 NE CZ NH1 NH2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 LYS B 75 CE NZ REMARK 470 LYS B 78 CE NZ REMARK 470 LYS B 83 CE NZ REMARK 470 LYS B 84 CD CE NZ REMARK 470 LYS B 86 CE NZ REMARK 470 SER B 101 OG REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 LYS B 112 CE NZ REMARK 470 LYS B 139 NZ REMARK 470 ARG B 143 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 158 CG1 CG2 REMARK 470 LYS B 256 CD CE NZ REMARK 470 SER B 263 OG REMARK 470 LYS B 307 CE NZ REMARK 470 SER B 312 OG REMARK 470 GLU B 313 CG CD OE1 OE2 REMARK 470 LYS B 334 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 27 OD2 ASP A 30 2.04 REMARK 500 OG1 THR B 160 O HOH B 564 2.07 REMARK 500 O PRO B 379 O HOH B 599 2.12 REMARK 500 OD1 ASP B 284 O HOH B 563 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 196 CE2 TYR A 196 CD2 -0.111 REMARK 500 VAL B 42 CB VAL B 42 CG1 -0.187 REMARK 500 VAL B 42 CB VAL B 42 CG2 -0.168 REMARK 500 CYS B 117 CB CYS B 117 SG -0.101 REMARK 500 VAL B 168 CB VAL B 168 CG2 -0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 86 -47.26 68.65 REMARK 500 LYS A 171 -59.51 -140.39 REMARK 500 PHE A 305 50.30 -114.57 REMARK 500 LYS B 86 -54.95 72.83 REMARK 500 LYS B 171 -57.22 -138.24 REMARK 500 LYS B 378 94.23 -169.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SGN C 2 DBREF 4DY0 A 1 379 UNP P07093 GDN_HUMAN 20 398 DBREF 4DY0 B 1 379 UNP P07093 GDN_HUMAN 20 398 SEQRES 1 A 379 SER HIS PHE ASN PRO LEU SER LEU GLU GLU LEU GLY SER SEQRES 2 A 379 ASN THR GLY ILE GLN VAL PHE ASN GLN ILE VAL LYS SER SEQRES 3 A 379 ARG PRO HIS ASP ASN ILE VAL ILE SER PRO HIS GLY ILE SEQRES 4 A 379 ALA SER VAL LEU GLY MET LEU GLN LEU GLY ALA ASP GLY SEQRES 5 A 379 ARG THR LYS LYS GLN LEU ALA MET VAL MET ARG TYR GLY SEQRES 6 A 379 VAL ASN GLY VAL GLY LYS ILE LEU LYS LYS ILE ASN LYS SEQRES 7 A 379 ALA ILE VAL SER LYS LYS ASN LYS ASP ILE VAL THR VAL SEQRES 8 A 379 ALA ASN ALA VAL PHE VAL LYS ASN ALA SER GLU ILE GLU SEQRES 9 A 379 VAL PRO PHE VAL THR ARG ASN LYS ASP VAL PHE GLN CYS SEQRES 10 A 379 GLU VAL ARG ASN VAL ASN PHE GLU ASP PRO ALA SER ALA SEQRES 11 A 379 CYS ASP SER ILE ASN ALA TRP VAL LYS ASN GLU THR ARG SEQRES 12 A 379 ASP MET ILE ASP ASN LEU LEU SER PRO ASP LEU ILE ASP SEQRES 13 A 379 GLY VAL LEU THR ARG LEU VAL LEU VAL ASN ALA VAL TYR SEQRES 14 A 379 PHE LYS GLY LEU TRP LYS SER ARG PHE GLN PRO GLU ASN SEQRES 15 A 379 THR LYS LYS ARG THR PHE VAL ALA ALA ASP GLY LYS SER SEQRES 16 A 379 TYR GLN VAL PRO MET LEU ALA GLN LEU SER VAL PHE ARG SEQRES 17 A 379 CYS GLY SER THR SER ALA PRO ASN ASP LEU TRP TYR ASN SEQRES 18 A 379 PHE ILE GLU LEU PRO TYR HIS GLY GLU SER ILE SER MET SEQRES 19 A 379 LEU ILE ALA LEU PRO THR GLU SER SER THR PRO LEU SER SEQRES 20 A 379 ALA ILE ILE PRO HIS ILE SER THR LYS THR ILE ASP SER SEQRES 21 A 379 TRP MET SER ILE MET VAL PRO LYS ARG VAL GLN VAL ILE SEQRES 22 A 379 LEU PRO LYS PHE THR ALA VAL ALA GLN THR ASP LEU LYS SEQRES 23 A 379 GLU PRO LEU LYS VAL LEU GLY ILE THR ASP MET PHE ASP SEQRES 24 A 379 SER SER LYS ALA ASN PHE ALA LYS ILE THR THR GLY SER SEQRES 25 A 379 GLU ASN LEU HIS VAL SER HIS ILE LEU GLN LYS ALA LYS SEQRES 26 A 379 ILE GLU VAL SER GLU ASP GLY THR LYS ALA SER ALA ALA SEQRES 27 A 379 THR THR ALA ILE LEU ILE ALA ARG SER SER PRO PRO TRP SEQRES 28 A 379 PHE ILE VAL ASP ARG PRO PHE LEU PHE PHE ILE ARG HIS SEQRES 29 A 379 ASN PRO THR GLY ALA VAL LEU PHE MET GLY GLN ILE ASN SEQRES 30 A 379 LYS PRO SEQRES 1 B 379 SER HIS PHE ASN PRO LEU SER LEU GLU GLU LEU GLY SER SEQRES 2 B 379 ASN THR GLY ILE GLN VAL PHE ASN GLN ILE VAL LYS SER SEQRES 3 B 379 ARG PRO HIS ASP ASN ILE VAL ILE SER PRO HIS GLY ILE SEQRES 4 B 379 ALA SER VAL LEU GLY MET LEU GLN LEU GLY ALA ASP GLY SEQRES 5 B 379 ARG THR LYS LYS GLN LEU ALA MET VAL MET ARG TYR GLY SEQRES 6 B 379 VAL ASN GLY VAL GLY LYS ILE LEU LYS LYS ILE ASN LYS SEQRES 7 B 379 ALA ILE VAL SER LYS LYS ASN LYS ASP ILE VAL THR VAL SEQRES 8 B 379 ALA ASN ALA VAL PHE VAL LYS ASN ALA SER GLU ILE GLU SEQRES 9 B 379 VAL PRO PHE VAL THR ARG ASN LYS ASP VAL PHE GLN CYS SEQRES 10 B 379 GLU VAL ARG ASN VAL ASN PHE GLU ASP PRO ALA SER ALA SEQRES 11 B 379 CYS ASP SER ILE ASN ALA TRP VAL LYS ASN GLU THR ARG SEQRES 12 B 379 ASP MET ILE ASP ASN LEU LEU SER PRO ASP LEU ILE ASP SEQRES 13 B 379 GLY VAL LEU THR ARG LEU VAL LEU VAL ASN ALA VAL TYR SEQRES 14 B 379 PHE LYS GLY LEU TRP LYS SER ARG PHE GLN PRO GLU ASN SEQRES 15 B 379 THR LYS LYS ARG THR PHE VAL ALA ALA ASP GLY LYS SER SEQRES 16 B 379 TYR GLN VAL PRO MET LEU ALA GLN LEU SER VAL PHE ARG SEQRES 17 B 379 CYS GLY SER THR SER ALA PRO ASN ASP LEU TRP TYR ASN SEQRES 18 B 379 PHE ILE GLU LEU PRO TYR HIS GLY GLU SER ILE SER MET SEQRES 19 B 379 LEU ILE ALA LEU PRO THR GLU SER SER THR PRO LEU SER SEQRES 20 B 379 ALA ILE ILE PRO HIS ILE SER THR LYS THR ILE ASP SER SEQRES 21 B 379 TRP MET SER ILE MET VAL PRO LYS ARG VAL GLN VAL ILE SEQRES 22 B 379 LEU PRO LYS PHE THR ALA VAL ALA GLN THR ASP LEU LYS SEQRES 23 B 379 GLU PRO LEU LYS VAL LEU GLY ILE THR ASP MET PHE ASP SEQRES 24 B 379 SER SER LYS ALA ASN PHE ALA LYS ILE THR THR GLY SER SEQRES 25 B 379 GLU ASN LEU HIS VAL SER HIS ILE LEU GLN LYS ALA LYS SEQRES 26 B 379 ILE GLU VAL SER GLU ASP GLY THR LYS ALA SER ALA ALA SEQRES 27 B 379 THR THR ALA ILE LEU ILE ALA ARG SER SER PRO PRO TRP SEQRES 28 B 379 PHE ILE VAL ASP ARG PRO PHE LEU PHE PHE ILE ARG HIS SEQRES 29 B 379 ASN PRO THR GLY ALA VAL LEU PHE MET GLY GLN ILE ASN SEQRES 30 B 379 LYS PRO HET IDS C 1 17 HET SGN C 2 18 HET SO4 A 401 5 HET GOL A 404 6 HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 B 403 5 HET GOL B 404 6 HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN IDS O2-SULFO-GLUCURONIC ACID; 2-O-SULFO-ALPHA-L-IDURONIC HETSYN 2 IDS ACID; 2-O-SULFO-L-IDURONIC ACID; 2-O-SULFO-IDURONIC HETSYN 3 IDS ACID HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 IDS C6 H10 O10 S FORMUL 3 SGN C6 H13 N O11 S2 FORMUL 4 SO4 4(O4 S 2-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 10 HOH *248(H2 O) HELIX 1 1 ASN A 4 ARG A 27 1 24 HELIX 2 2 SER A 35 LEU A 48 1 14 HELIX 3 3 ASP A 51 ARG A 63 1 13 HELIX 4 4 VAL A 69 SER A 82 1 14 HELIX 5 5 LYS A 83 LYS A 86 5 4 HELIX 6 6 GLU A 104 GLN A 116 1 13 HELIX 7 7 ASP A 126 THR A 142 1 17 HELIX 8 8 SER A 151 ILE A 155 5 5 HELIX 9 9 GLN A 179 THR A 183 5 5 HELIX 10 10 PRO A 245 ILE A 249 5 5 HELIX 11 11 SER A 254 SER A 263 1 10 HELIX 12 12 LEU A 285 LEU A 292 1 8 HELIX 13 13 THR A 295 ASP A 299 5 5 HELIX 14 14 PRO B 5 ARG B 27 1 23 HELIX 15 15 SER B 35 LEU B 48 1 14 HELIX 16 16 ASP B 51 ARG B 63 1 13 HELIX 17 17 VAL B 66 GLY B 68 5 3 HELIX 18 18 VAL B 69 SER B 82 1 14 HELIX 19 19 LYS B 83 LYS B 86 5 4 HELIX 20 20 GLU B 104 GLN B 116 1 13 HELIX 21 21 ASP B 126 THR B 142 1 17 HELIX 22 22 SER B 151 ILE B 155 5 5 HELIX 23 23 GLN B 179 THR B 183 5 5 HELIX 24 24 PRO B 245 ILE B 249 5 5 HELIX 25 25 SER B 254 SER B 263 1 10 HELIX 26 26 LEU B 285 LEU B 292 1 8 HELIX 27 27 THR B 295 ASP B 299 5 5 SHEET 1 A 7 ILE A 32 ILE A 34 0 SHEET 2 A 7 ALA A 369 ILE A 376 -1 O MET A 373 N ILE A 34 SHEET 3 A 7 PHE A 358 HIS A 364 -1 N HIS A 364 O ALA A 369 SHEET 4 A 7 ILE A 232 PRO A 239 -1 N ALA A 237 O LEU A 359 SHEET 5 A 7 TRP A 219 PRO A 226 -1 N LEU A 225 O MET A 234 SHEET 6 A 7 SER A 195 SER A 213 -1 N ARG A 208 O GLU A 224 SHEET 7 A 7 LYS A 184 VAL A 189 -1 N ARG A 186 O VAL A 198 SHEET 1 B 8 ILE A 32 ILE A 34 0 SHEET 2 B 8 ALA A 369 ILE A 376 -1 O MET A 373 N ILE A 34 SHEET 3 B 8 PHE A 358 HIS A 364 -1 N HIS A 364 O ALA A 369 SHEET 4 B 8 ILE A 232 PRO A 239 -1 N ALA A 237 O LEU A 359 SHEET 5 B 8 TRP A 219 PRO A 226 -1 N LEU A 225 O MET A 234 SHEET 6 B 8 SER A 195 SER A 213 -1 N ARG A 208 O GLU A 224 SHEET 7 B 8 VAL A 266 PRO A 275 -1 O LEU A 274 N LEU A 201 SHEET 8 B 8 TRP A 351 ILE A 353 1 O PHE A 352 N GLN A 271 SHEET 1 C 5 CYS A 117 ASN A 121 0 SHEET 2 C 5 THR A 90 VAL A 97 1 N VAL A 95 O GLU A 118 SHEET 3 C 5 LEU A 162 PHE A 170 -1 O ALA A 167 N ALA A 92 SHEET 4 C 5 HIS A 319 VAL A 328 1 O LEU A 321 N ASN A 166 SHEET 5 C 5 PHE A 277 ASP A 284 -1 N PHE A 277 O VAL A 328 SHEET 1 D 7 ILE B 32 ILE B 34 0 SHEET 2 D 7 ALA B 369 ILE B 376 -1 O MET B 373 N ILE B 34 SHEET 3 D 7 PHE B 358 HIS B 364 -1 N PHE B 358 O ILE B 376 SHEET 4 D 7 ILE B 232 PRO B 239 -1 N ALA B 237 O LEU B 359 SHEET 5 D 7 TRP B 219 PRO B 226 -1 N LEU B 225 O MET B 234 SHEET 6 D 7 SER B 195 SER B 213 -1 N GLY B 210 O PHE B 222 SHEET 7 D 7 LYS B 184 VAL B 189 -1 N PHE B 188 O TYR B 196 SHEET 1 E 8 ILE B 32 ILE B 34 0 SHEET 2 E 8 ALA B 369 ILE B 376 -1 O MET B 373 N ILE B 34 SHEET 3 E 8 PHE B 358 HIS B 364 -1 N PHE B 358 O ILE B 376 SHEET 4 E 8 ILE B 232 PRO B 239 -1 N ALA B 237 O LEU B 359 SHEET 5 E 8 TRP B 219 PRO B 226 -1 N LEU B 225 O MET B 234 SHEET 6 E 8 SER B 195 SER B 213 -1 N GLY B 210 O PHE B 222 SHEET 7 E 8 VAL B 266 PRO B 275 -1 O LYS B 268 N PHE B 207 SHEET 8 E 8 TRP B 351 ILE B 353 1 O PHE B 352 N GLN B 271 SHEET 1 F 5 CYS B 117 VAL B 122 0 SHEET 2 F 5 THR B 90 LYS B 98 1 N ASN B 93 O GLU B 118 SHEET 3 F 5 LEU B 162 PHE B 170 -1 O VAL B 163 N PHE B 96 SHEET 4 F 5 VAL B 317 VAL B 328 1 O HIS B 319 N LEU B 164 SHEET 5 F 5 PHE B 277 ASP B 284 -1 N PHE B 277 O VAL B 328 LINK O4 IDS C 1 C1 SGN C 2 1555 1555 1.45 CRYST1 140.650 140.650 93.550 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007110 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010689 0.00000