PDB Short entry for 4EEY HEADER TRANSFERASE/DNA 28-MAR-12 4EEY TITLE CRYSTAL STRUCTURE OF HUMAN DNA POLYMERASE ETA IN TERNARY COMPLEX WITH TITLE 2 A CISPLATIN DNA ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE ETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-432; COMPND 5 SYNONYM: RAD30 HOMOLOG A, XERODERMA PIGMENTOSUM VARIANT TYPE PROTEIN; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 5'-D(*CP*TP*TP*GP*GP*TP*CP*TP*CP*CP*TP*CP*C)-3'; COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: TEMPLATE STRAND; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: 5'-D(*TP*GP*GP*AP*GP*GP*AP*GP*A)-3'; COMPND 16 CHAIN: P; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: PRIMER STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLH, RAD30, RAD30A, XPV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES KEYWDS DNA REPLICATION, DNA REPAIR, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.UMMAT,O.RECHKOBLIT,R.JAIN,J.R.CHOUDHURY,R.E.JOHNSON, AUTHOR 2 T.D.SILVERSTEIN,A.BUKU,S.LONE,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL REVDAT 3 13-SEP-23 4EEY 1 REMARK SEQADV LINK REVDAT 2 19-JUN-13 4EEY 1 JRNL REVDAT 1 09-MAY-12 4EEY 0 JRNL AUTH A.UMMAT,O.RECHKOBLIT,R.JAIN,J.ROY CHOUDHURY,R.E.JOHNSON, JRNL AUTH 2 T.D.SILVERSTEIN,A.BUKU,S.LONE,L.PRAKASH,S.PRAKASH, JRNL AUTH 3 A.K.AGGARWAL JRNL TITL STRUCTURAL BASIS FOR CISPLATIN DNA DAMAGE TOLERANCE BY HUMAN JRNL TITL 2 POLYMERASE {ETA} DURING CANCER CHEMOTHERAPY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 628 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22562137 JRNL DOI 10.1038/NSMB.2295 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1528 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1329 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3255 REMARK 3 NUCLEIC ACID ATOMS : 388 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : -0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.484 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.166 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3803 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5221 ; 1.134 ; 2.109 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 423 ; 5.028 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;38.332 ;23.650 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;14.103 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.095 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2673 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2113 ; 0.299 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3383 ; 0.605 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1690 ; 1.079 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1838 ; 1.618 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3437 -7.6949 3.9242 REMARK 3 T TENSOR REMARK 3 T11: 0.0504 T22: 0.0545 REMARK 3 T33: 0.0477 T12: -0.0217 REMARK 3 T13: -0.0000 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.0164 L22: 1.3531 REMARK 3 L33: 1.0163 L12: -0.5519 REMARK 3 L13: 0.3580 L23: -0.3612 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: 0.0498 S13: 0.0374 REMARK 3 S21: -0.0786 S22: -0.0918 S23: -0.0899 REMARK 3 S31: 0.0740 S32: 0.1087 S33: 0.0434 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6426 8.8101 3.1388 REMARK 3 T TENSOR REMARK 3 T11: 0.0032 T22: 0.1567 REMARK 3 T33: 0.1717 T12: 0.0127 REMARK 3 T13: 0.0058 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 5.5767 L22: 6.4580 REMARK 3 L33: 8.0022 L12: 0.2974 REMARK 3 L13: -3.0563 L23: -0.5207 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: 0.1034 S13: 0.0112 REMARK 3 S21: -0.0358 S22: -0.0129 S23: 0.7368 REMARK 3 S31: -0.1119 S32: -1.0154 S33: -0.0087 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0946 10.2922 2.0833 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0604 REMARK 3 T33: 0.0595 T12: 0.0044 REMARK 3 T13: -0.0007 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.4358 L22: 0.8591 REMARK 3 L33: 0.5358 L12: -0.0431 REMARK 3 L13: -0.0856 L23: -0.0179 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: 0.0339 S13: 0.0024 REMARK 3 S21: -0.0158 S22: -0.0388 S23: -0.1262 REMARK 3 S31: -0.0115 S32: 0.1109 S33: -0.0144 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 337 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): 69.2113 -6.4266 -9.4137 REMARK 3 T TENSOR REMARK 3 T11: 0.1108 T22: 0.1398 REMARK 3 T33: 0.1471 T12: 0.0344 REMARK 3 T13: 0.0502 T23: 0.0784 REMARK 3 L TENSOR REMARK 3 L11: 4.5893 L22: 3.4563 REMARK 3 L33: 5.3500 L12: 0.5865 REMARK 3 L13: 2.4093 L23: -0.2244 REMARK 3 S TENSOR REMARK 3 S11: -0.2049 S12: 0.1174 S13: 0.0655 REMARK 3 S21: -0.0520 S22: -0.1834 S23: -0.3829 REMARK 3 S31: -0.1757 S32: 0.7064 S33: 0.3884 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 3 T 13 REMARK 3 ORIGIN FOR THE GROUP (A): 59.8447 3.8510 -0.8297 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1323 REMARK 3 T33: 0.1278 T12: -0.0552 REMARK 3 T13: 0.0116 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.0659 L22: 14.1046 REMARK 3 L33: 1.5903 L12: 2.0183 REMARK 3 L13: -0.3513 L23: -4.1567 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: -0.1916 S13: 0.1191 REMARK 3 S21: -0.5422 S22: -0.0164 S23: 0.4180 REMARK 3 S31: 0.0369 S32: 0.1416 S33: -0.0525 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 1 P 9 REMARK 3 ORIGIN FOR THE GROUP (A): 62.3122 8.0811 -3.1008 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: 0.1692 REMARK 3 T33: 0.1047 T12: -0.0004 REMARK 3 T13: 0.0517 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 7.3159 L22: 7.4015 REMARK 3 L33: 2.8649 L12: 4.3722 REMARK 3 L13: -1.4453 L23: -1.6336 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: -0.4298 S13: 0.5026 REMARK 3 S21: -0.4824 S22: -0.0937 S23: -0.1717 REMARK 3 S31: 0.1257 S32: 0.6303 S33: 0.0331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4EEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0722 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19734 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3MR2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-35% PEG1500, 0.1 M BIS-TRIS, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.53433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.06867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.30150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.83583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.76717 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 156 REMARK 465 ALA A 157 REMARK 465 GLY A 410 REMARK 465 ILE A 411 REMARK 465 GLN A 412 REMARK 465 DC T 1 REMARK 465 DT T 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 74 OD1 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 GLN A 130 OE1 NE2 REMARK 470 LEU A 132 CB CG CD1 CD2 REMARK 470 GLN A 133 CB CG CD OE1 NE2 REMARK 470 GLN A 135 CG CD OE1 NE2 REMARK 470 THR A 155 CB OG1 CG2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 GLU A 159 CB CG CD OE1 OE2 REMARK 470 GLN A 162 CD OE1 NE2 REMARK 470 GLN A 169 CG CD OE1 NE2 REMARK 470 ASP A 181 CG OD1 OD2 REMARK 470 ASN A 182 CG OD1 ND2 REMARK 470 LEU A 183 CG CD1 CD2 REMARK 470 ARG A 256 CD NE CZ NH1 NH2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 GLU A 292 CD OE1 OE2 REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 GLU A 335 OE1 OE2 REMARK 470 GLN A 338 CG CD OE1 NE2 REMARK 470 LYS A 376 CB CG CD CE NZ REMARK 470 LEU A 378 CG CD1 CD2 REMARK 470 ARG A 382 CZ NH1 NH2 REMARK 470 LYS A 404 CG CD CE NZ REMARK 470 THR A 413 CB OG1 CG2 REMARK 470 DT T 3 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT T 3 C7 C6 REMARK 470 DT P 1 O5' C5' N1 C2 O2 N3 C4 REMARK 470 DT P 1 O4 C5 C7 C6 REMARK 470 DA P 9 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 4 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC T 7 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC T 9 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC T 10 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG P 8 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG P 8 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 16 66.04 24.24 REMARK 500 TYR A 39 66.25 72.36 REMARK 500 SER A 62 -7.01 83.50 REMARK 500 GLU A 159 -53.56 -148.40 REMARK 500 SER A 217 -157.39 -154.36 REMARK 500 SER A 257 -5.22 92.74 REMARK 500 LEU A 381 124.14 -173.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 MET A 14 O 87.0 REMARK 620 3 ASP A 115 OD1 78.1 87.9 REMARK 620 4 DCP A 501 O1A 103.6 167.9 88.6 REMARK 620 5 DCP A 501 O1G 112.9 98.5 167.5 83.0 REMARK 620 6 DCP A 501 O1B 169.4 88.3 92.3 80.3 77.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT T 101 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG T 4 N7 REMARK 620 2 CPT T 101 N1 86.2 REMARK 620 3 CPT T 101 N2 174.1 87.9 REMARK 620 4 DG T 5 N7 95.4 176.0 90.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT T 101 DBREF 4EEY A 1 432 UNP Q9Y253 POLH_HUMAN 1 432 DBREF 4EEY T 1 13 PDB 4EEY 4EEY 1 13 DBREF 4EEY P 1 9 PDB 4EEY 4EEY 1 9 SEQADV 4EEY GLY A -2 UNP Q9Y253 EXPRESSION TAG SEQADV 4EEY PRO A -1 UNP Q9Y253 EXPRESSION TAG SEQADV 4EEY HIS A 0 UNP Q9Y253 EXPRESSION TAG SEQADV 4EEY MET A 406 UNP Q9Y253 CYS 406 ENGINEERED MUTATION SEQRES 1 A 435 GLY PRO HIS MET ALA THR GLY GLN ASP ARG VAL VAL ALA SEQRES 2 A 435 LEU VAL ASP MET ASP CYS PHE PHE VAL GLN VAL GLU GLN SEQRES 3 A 435 ARG GLN ASN PRO HIS LEU ARG ASN LYS PRO CYS ALA VAL SEQRES 4 A 435 VAL GLN TYR LYS SER TRP LYS GLY GLY GLY ILE ILE ALA SEQRES 5 A 435 VAL SER TYR GLU ALA ARG ALA PHE GLY VAL THR ARG SER SEQRES 6 A 435 MET TRP ALA ASP ASP ALA LYS LYS LEU CYS PRO ASP LEU SEQRES 7 A 435 LEU LEU ALA GLN VAL ARG GLU SER ARG GLY LYS ALA ASN SEQRES 8 A 435 LEU THR LYS TYR ARG GLU ALA SER VAL GLU VAL MET GLU SEQRES 9 A 435 ILE MET SER ARG PHE ALA VAL ILE GLU ARG ALA SER ILE SEQRES 10 A 435 ASP GLU ALA TYR VAL ASP LEU THR SER ALA VAL GLN GLU SEQRES 11 A 435 ARG LEU GLN LYS LEU GLN GLY GLN PRO ILE SER ALA ASP SEQRES 12 A 435 LEU LEU PRO SER THR TYR ILE GLU GLY LEU PRO GLN GLY SEQRES 13 A 435 PRO THR THR ALA GLU GLU THR VAL GLN LYS GLU GLY MET SEQRES 14 A 435 ARG LYS GLN GLY LEU PHE GLN TRP LEU ASP SER LEU GLN SEQRES 15 A 435 ILE ASP ASN LEU THR SER PRO ASP LEU GLN LEU THR VAL SEQRES 16 A 435 GLY ALA VAL ILE VAL GLU GLU MET ARG ALA ALA ILE GLU SEQRES 17 A 435 ARG GLU THR GLY PHE GLN CYS SER ALA GLY ILE SER HIS SEQRES 18 A 435 ASN LYS VAL LEU ALA LYS LEU ALA CYS GLY LEU ASN LYS SEQRES 19 A 435 PRO ASN ARG GLN THR LEU VAL SER HIS GLY SER VAL PRO SEQRES 20 A 435 GLN LEU PHE SER GLN MET PRO ILE ARG LYS ILE ARG SER SEQRES 21 A 435 LEU GLY GLY LYS LEU GLY ALA SER VAL ILE GLU ILE LEU SEQRES 22 A 435 GLY ILE GLU TYR MET GLY GLU LEU THR GLN PHE THR GLU SEQRES 23 A 435 SER GLN LEU GLN SER HIS PHE GLY GLU LYS ASN GLY SER SEQRES 24 A 435 TRP LEU TYR ALA MET CYS ARG GLY ILE GLU HIS ASP PRO SEQRES 25 A 435 VAL LYS PRO ARG GLN LEU PRO LYS THR ILE GLY CYS SER SEQRES 26 A 435 LYS ASN PHE PRO GLY LYS THR ALA LEU ALA THR ARG GLU SEQRES 27 A 435 GLN VAL GLN TRP TRP LEU LEU GLN LEU ALA GLN GLU LEU SEQRES 28 A 435 GLU GLU ARG LEU THR LYS ASP ARG ASN ASP ASN ASP ARG SEQRES 29 A 435 VAL ALA THR GLN LEU VAL VAL SER ILE ARG VAL GLN GLY SEQRES 30 A 435 ASP LYS ARG LEU SER SER LEU ARG ARG CYS CYS ALA LEU SEQRES 31 A 435 THR ARG TYR ASP ALA HIS LYS MET SER HIS ASP ALA PHE SEQRES 32 A 435 THR VAL ILE LYS ASN MET ASN THR SER GLY ILE GLN THR SEQRES 33 A 435 GLU TRP SER PRO PRO LEU THR MET LEU PHE LEU CYS ALA SEQRES 34 A 435 THR LYS PHE SER ALA SER SEQRES 1 T 13 DC DT DT DG DG DT DC DT DC DC DT DC DC SEQRES 1 P 9 DT DG DG DA DG DG DA DG DA HET DCP A 501 28 HET MG A 502 1 HET CPT T 101 3 HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CPT CISPLATIN HETSYN CPT DIAMMINE(DICHLORO)PLATINUM FORMUL 4 DCP C9 H16 N3 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 CPT CL2 H6 N2 PT FORMUL 7 HOH *116(H2 O) HELIX 1 1 CYS A 16 ASN A 26 1 11 HELIX 2 2 PRO A 27 ARG A 30 5 4 HELIX 3 3 SER A 51 ALA A 56 1 6 HELIX 4 4 TRP A 64 CYS A 72 1 9 HELIX 5 5 LEU A 89 SER A 104 1 16 HELIX 6 6 LEU A 121 LEU A 132 1 12 HELIX 7 7 SER A 138 LEU A 142 5 5 HELIX 8 8 GLN A 162 LEU A 178 1 17 HELIX 9 9 SER A 185 GLY A 209 1 25 HELIX 10 10 ASN A 219 GLY A 228 1 10 HELIX 11 11 SER A 239 GLY A 241 5 3 HELIX 12 12 SER A 242 GLN A 249 1 8 HELIX 13 13 MET A 250 ILE A 255 5 6 HELIX 14 14 GLY A 260 GLY A 271 1 12 HELIX 15 15 MET A 275 PHE A 281 5 7 HELIX 16 16 THR A 282 GLY A 291 1 10 HELIX 17 17 GLY A 291 CYS A 302 1 12 HELIX 18 18 PRO A 326 ALA A 330 5 5 HELIX 19 19 ARG A 334 ASP A 360 1 27 HELIX 20 20 ASP A 391 LYS A 404 1 14 HELIX 21 21 ASN A 405 ASN A 407 5 3 SHEET 1 A 6 ILE A 109 SER A 113 0 SHEET 2 A 6 GLU A 116 ASP A 120 -1 O TYR A 118 N GLU A 110 SHEET 3 A 6 VAL A 9 MET A 14 -1 N ALA A 10 O VAL A 119 SHEET 4 A 6 CYS A 212 SER A 217 -1 O SER A 213 N ASP A 13 SHEET 5 A 6 GLN A 235 LEU A 237 1 O THR A 236 N ILE A 216 SHEET 6 A 6 THR A 145 ILE A 147 1 N TYR A 146 O GLN A 235 SHEET 1 B 3 GLY A 46 VAL A 50 0 SHEET 2 B 3 CYS A 34 GLN A 38 -1 N VAL A 36 O ILE A 48 SHEET 3 B 3 LEU A 76 GLN A 79 1 O ALA A 78 N VAL A 37 SHEET 1 C 2 GLU A 82 SER A 83 0 SHEET 2 C 2 LYS A 86 ALA A 87 -1 O LYS A 86 N SER A 83 SHEET 1 D 3 ILE A 319 ASN A 324 0 SHEET 2 D 3 GLU A 414 ALA A 431 -1 O ALA A 426 N ILE A 319 SHEET 3 D 3 LEU A 331 THR A 333 -1 N ALA A 332 O TRP A 415 SHEET 1 E 4 ILE A 319 ASN A 324 0 SHEET 2 E 4 GLU A 414 ALA A 431 -1 O ALA A 426 N ILE A 319 SHEET 3 E 4 ARG A 361 VAL A 372 -1 N VAL A 367 O CYS A 425 SHEET 4 E 4 LEU A 381 ALA A 386 -1 O ARG A 383 N VAL A 368 LINK OD1 ASP A 13 MG MG A 502 1555 1555 2.29 LINK O MET A 14 MG MG A 502 1555 1555 2.16 LINK OD1 ASP A 115 MG MG A 502 1555 1555 2.16 LINK O1A DCP A 501 MG MG A 502 1555 1555 2.18 LINK O1G DCP A 501 MG MG A 502 1555 1555 2.19 LINK O1B DCP A 501 MG MG A 502 1555 1555 2.29 LINK N7 DG T 4 PT1 CPT T 101 1555 1555 1.97 LINK N7 DG T 5 PT1 CPT T 101 1555 1555 2.02 CISPEP 1 LEU A 150 PRO A 151 0 3.87 CISPEP 2 LYS A 231 PRO A 232 0 -7.38 CISPEP 3 SER A 416 PRO A 417 0 -3.46 SITE 1 AC1 20 ASP A 13 MET A 14 ASP A 15 CYS A 16 SITE 2 AC1 20 PHE A 17 PHE A 18 ILE A 48 ALA A 49 SITE 3 AC1 20 TYR A 52 ARG A 55 ARG A 61 ASP A 115 SITE 4 AC1 20 LYS A 231 MG A 502 HOH A 627 HOH A 646 SITE 5 AC1 20 HOH A 647 HOH A 653 DA P 9 DG T 5 SITE 1 AC2 4 ASP A 13 MET A 14 ASP A 115 DCP A 501 SITE 1 AC3 3 DG T 4 DG T 5 DT T 6 CRYST1 98.500 98.500 82.603 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010152 0.005861 0.000000 0.00000 SCALE2 0.000000 0.011723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012106 0.00000