PDB Short entry for 4EKK HEADER TRANSFERASE 09-APR-12 4EKK TITLE AKT1 WITH AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAC-ALPHA SERINE/THREONINE-PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 144-480; COMPND 5 SYNONYM: PROTEIN KINASE B, PKB, PROTEIN KINASE B ALPHA, PKB ALPHA, COMPND 6 PROTO-ONCOGENE C-AKT, RAC-PK-ALPHA; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: GLYCOGEN SYNTHASE KINASE-3 BETA; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: UNP RESIDUES 3-12; COMPND 14 SYNONYM: GSK-3 BETA, SERINE/THREONINE-PROTEIN KINASE GSK3B; COMPND 15 EC: 2.7.11.26, 2.7.11.1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKT1, PKB, RAC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS PHOSPHOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.-I.WU,G.P.A.VIGERS,T.H.MORALES,B.J.BRANDHUBER REVDAT 2 24-JAN-18 4EKK 1 AUTHOR REVDAT 1 23-MAY-12 4EKK 0 JRNL AUTH K.LIN,J.LIN,W.I.WU,J.BALLARD,B.B.LEE,S.L.GLOOR,G.P.VIGERS, JRNL AUTH 2 T.H.MORALES,L.S.FRIEDMAN,N.SKELTON,B.J.BRANDHUBER JRNL TITL AN ATP-SITE ON-OFF SWITCH THAT RESTRICTS PHOSPHATASE JRNL TITL 2 ACCESSIBILITY OF AKT. JRNL REF SCI.SIGNAL. V. 5 RA37 2012 JRNL REFN ESSN 1937-9145 JRNL PMID 22569334 JRNL DOI 10.1126/SCISIGNAL.2002618 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1084 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.420 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.312 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.603 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.847 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5582 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7522 ; 1.096 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 652 ; 5.627 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;34.431 ;23.285 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1002 ;16.384 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.729 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4234 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3264 ; 0.366 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5248 ; 0.696 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2318 ; 0.809 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2274 ; 1.424 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000071734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21128 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : 0.16000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4K, 100MM TRIS-PH7.5, UNDER REMARK 280 OIL, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.92650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 140 REMARK 465 ALA A 141 REMARK 465 MET A 142 REMARK 465 ALA A 143 REMARK 465 THR A 448 REMARK 465 ILE A 449 REMARK 465 THR A 450 REMARK 465 PRO A 451 REMARK 465 PRO A 452 REMARK 465 ASP A 453 REMARK 465 GLN A 454 REMARK 465 ASP A 455 REMARK 465 ASP A 456 REMARK 465 SER A 457 REMARK 465 MET A 458 REMARK 465 GLU A 459 REMARK 465 CYS A 460 REMARK 465 VAL A 461 REMARK 465 ASP A 462 REMARK 465 SER A 478 REMARK 465 THR A 479 REMARK 465 ALA A 480 REMARK 465 GLY B 140 REMARK 465 ALA B 141 REMARK 465 MET B 142 REMARK 465 ALA B 143 REMARK 465 THR B 448 REMARK 465 ILE B 449 REMARK 465 THR B 450 REMARK 465 PRO B 451 REMARK 465 PRO B 452 REMARK 465 ASP B 453 REMARK 465 GLN B 454 REMARK 465 ASP B 455 REMARK 465 ASP B 456 REMARK 465 SER B 457 REMARK 465 MET B 458 REMARK 465 GLU B 459 REMARK 465 CYS B 460 REMARK 465 VAL B 461 REMARK 465 ASP B 462 REMARK 465 SER B 478 REMARK 465 THR B 479 REMARK 465 ALA B 480 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 149 -12.52 155.31 REMARK 500 LYS A 214 -70.87 -81.58 REMARK 500 ARG A 243 -57.11 63.28 REMARK 500 ARG A 273 -18.59 66.50 REMARK 500 ASP A 292 90.66 66.46 REMARK 500 LYS A 301 -128.49 -95.40 REMARK 500 ASP A 302 -117.86 -40.59 REMARK 500 ASP A 325 152.19 -48.11 REMARK 500 ASP A 398 -119.54 46.86 REMARK 500 GLN A 428 48.47 -103.17 REMARK 500 THR A 430 -70.45 -68.79 REMARK 500 THR A 443 40.35 -77.97 REMARK 500 MET A 446 -178.90 -68.37 REMARK 500 THR B 219 -164.14 -125.01 REMARK 500 ARG B 243 -47.31 56.49 REMARK 500 ARG B 273 -27.20 73.75 REMARK 500 ASP B 292 117.01 60.18 REMARK 500 ASP B 302 -108.65 33.27 REMARK 500 ASP B 325 133.59 79.82 REMARK 500 MET B 363 -63.24 -90.76 REMARK 500 ASP B 398 -132.75 50.92 REMARK 500 SER B 431 -158.10 -126.81 REMARK 500 THR B 435 33.53 -99.80 REMARK 500 GLU B 464 -56.25 -128.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 501 O2B REMARK 620 2 ANP A 501 O3G 81.3 REMARK 620 3 ASP A 292 OD1 76.9 123.4 REMARK 620 4 ASP A 292 OD2 75.0 73.4 50.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 501 O2A REMARK 620 2 ASP A 292 OD2 85.7 REMARK 620 3 ANP A 501 O1G 139.6 102.5 REMARK 620 4 ASN A 279 OD1 116.6 91.9 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 279 OD1 REMARK 620 2 ANP B 501 O2A 99.6 REMARK 620 3 ANP B 501 N3B 149.1 78.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 503 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B 501 O2B REMARK 620 2 ASP B 292 OD2 76.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EKL RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 GLY TO SER CONFLICT IN UNP ENTRY P31749 DBREF 4EKK A 144 480 UNP P31749 AKT1_HUMAN 144 480 DBREF 4EKK B 144 480 UNP P31749 AKT1_HUMAN 144 480 DBREF 4EKK C 1 10 UNP P49841 GSK3B_HUMAN 3 12 DBREF 4EKK D 1 10 UNP P49841 GSK3B_HUMAN 3 12 SEQADV 4EKK GLY A 140 UNP P31749 EXPRESSION TAG SEQADV 4EKK ALA A 141 UNP P31749 EXPRESSION TAG SEQADV 4EKK MET A 142 UNP P31749 EXPRESSION TAG SEQADV 4EKK ALA A 143 UNP P31749 EXPRESSION TAG SEQADV 4EKK ASP A 473 UNP P31749 SER 473 ENGINEERED MUTATION SEQADV 4EKK SER A 478 UNP P31749 GLY 478 SEE REMARK 999 SEQADV 4EKK GLY B 140 UNP P31749 EXPRESSION TAG SEQADV 4EKK ALA B 141 UNP P31749 EXPRESSION TAG SEQADV 4EKK MET B 142 UNP P31749 EXPRESSION TAG SEQADV 4EKK ALA B 143 UNP P31749 EXPRESSION TAG SEQADV 4EKK ASP B 473 UNP P31749 SER 473 ENGINEERED MUTATION SEQADV 4EKK SER B 478 UNP P31749 GLY 478 SEE REMARK 999 SEQRES 1 A 341 GLY ALA MET ALA ARG VAL THR MET ASN GLU PHE GLU TYR SEQRES 2 A 341 LEU LYS LEU LEU GLY LYS GLY THR PHE GLY LYS VAL ILE SEQRES 3 A 341 LEU VAL LYS GLU LYS ALA THR GLY ARG TYR TYR ALA MET SEQRES 4 A 341 LYS ILE LEU LYS LYS GLU VAL ILE VAL ALA LYS ASP GLU SEQRES 5 A 341 VAL ALA HIS THR LEU THR GLU ASN ARG VAL LEU GLN ASN SEQRES 6 A 341 SER ARG HIS PRO PHE LEU THR ALA LEU LYS TYR SER PHE SEQRES 7 A 341 GLN THR HIS ASP ARG LEU CYS PHE VAL MET GLU TYR ALA SEQRES 8 A 341 ASN GLY GLY GLU LEU PHE PHE HIS LEU SER ARG GLU ARG SEQRES 9 A 341 VAL PHE SER GLU ASP ARG ALA ARG PHE TYR GLY ALA GLU SEQRES 10 A 341 ILE VAL SER ALA LEU ASP TYR LEU HIS SER GLU LYS ASN SEQRES 11 A 341 VAL VAL TYR ARG ASP LEU LYS LEU GLU ASN LEU MET LEU SEQRES 12 A 341 ASP LYS ASP GLY HIS ILE LYS ILE THR ASP PHE GLY LEU SEQRES 13 A 341 CYS LYS GLU GLY ILE LYS ASP GLY ALA THR MET LYS TPO SEQRES 14 A 341 PHE CYS GLY THR PRO GLU TYR LEU ALA PRO GLU VAL LEU SEQRES 15 A 341 GLU ASP ASN ASP TYR GLY ARG ALA VAL ASP TRP TRP GLY SEQRES 16 A 341 LEU GLY VAL VAL MET TYR GLU MET MET CYS GLY ARG LEU SEQRES 17 A 341 PRO PHE TYR ASN GLN ASP HIS GLU LYS LEU PHE GLU LEU SEQRES 18 A 341 ILE LEU MET GLU GLU ILE ARG PHE PRO ARG THR LEU GLY SEQRES 19 A 341 PRO GLU ALA LYS SER LEU LEU SER GLY LEU LEU LYS LYS SEQRES 20 A 341 ASP PRO LYS GLN ARG LEU GLY GLY GLY SER GLU ASP ALA SEQRES 21 A 341 LYS GLU ILE MET GLN HIS ARG PHE PHE ALA GLY ILE VAL SEQRES 22 A 341 TRP GLN HIS VAL TYR GLU LYS LYS LEU SER PRO PRO PHE SEQRES 23 A 341 LYS PRO GLN VAL THR SER GLU THR ASP THR ARG TYR PHE SEQRES 24 A 341 ASP GLU GLU PHE THR ALA GLN MET ILE THR ILE THR PRO SEQRES 25 A 341 PRO ASP GLN ASP ASP SER MET GLU CYS VAL ASP SER GLU SEQRES 26 A 341 ARG ARG PRO HIS PHE PRO GLN PHE ASP TYR SER ALA SER SEQRES 27 A 341 SER THR ALA SEQRES 1 B 341 GLY ALA MET ALA ARG VAL THR MET ASN GLU PHE GLU TYR SEQRES 2 B 341 LEU LYS LEU LEU GLY LYS GLY THR PHE GLY LYS VAL ILE SEQRES 3 B 341 LEU VAL LYS GLU LYS ALA THR GLY ARG TYR TYR ALA MET SEQRES 4 B 341 LYS ILE LEU LYS LYS GLU VAL ILE VAL ALA LYS ASP GLU SEQRES 5 B 341 VAL ALA HIS THR LEU THR GLU ASN ARG VAL LEU GLN ASN SEQRES 6 B 341 SER ARG HIS PRO PHE LEU THR ALA LEU LYS TYR SER PHE SEQRES 7 B 341 GLN THR HIS ASP ARG LEU CYS PHE VAL MET GLU TYR ALA SEQRES 8 B 341 ASN GLY GLY GLU LEU PHE PHE HIS LEU SER ARG GLU ARG SEQRES 9 B 341 VAL PHE SER GLU ASP ARG ALA ARG PHE TYR GLY ALA GLU SEQRES 10 B 341 ILE VAL SER ALA LEU ASP TYR LEU HIS SER GLU LYS ASN SEQRES 11 B 341 VAL VAL TYR ARG ASP LEU LYS LEU GLU ASN LEU MET LEU SEQRES 12 B 341 ASP LYS ASP GLY HIS ILE LYS ILE THR ASP PHE GLY LEU SEQRES 13 B 341 CYS LYS GLU GLY ILE LYS ASP GLY ALA THR MET LYS TPO SEQRES 14 B 341 PHE CYS GLY THR PRO GLU TYR LEU ALA PRO GLU VAL LEU SEQRES 15 B 341 GLU ASP ASN ASP TYR GLY ARG ALA VAL ASP TRP TRP GLY SEQRES 16 B 341 LEU GLY VAL VAL MET TYR GLU MET MET CYS GLY ARG LEU SEQRES 17 B 341 PRO PHE TYR ASN GLN ASP HIS GLU LYS LEU PHE GLU LEU SEQRES 18 B 341 ILE LEU MET GLU GLU ILE ARG PHE PRO ARG THR LEU GLY SEQRES 19 B 341 PRO GLU ALA LYS SER LEU LEU SER GLY LEU LEU LYS LYS SEQRES 20 B 341 ASP PRO LYS GLN ARG LEU GLY GLY GLY SER GLU ASP ALA SEQRES 21 B 341 LYS GLU ILE MET GLN HIS ARG PHE PHE ALA GLY ILE VAL SEQRES 22 B 341 TRP GLN HIS VAL TYR GLU LYS LYS LEU SER PRO PRO PHE SEQRES 23 B 341 LYS PRO GLN VAL THR SER GLU THR ASP THR ARG TYR PHE SEQRES 24 B 341 ASP GLU GLU PHE THR ALA GLN MET ILE THR ILE THR PRO SEQRES 25 B 341 PRO ASP GLN ASP ASP SER MET GLU CYS VAL ASP SER GLU SEQRES 26 B 341 ARG ARG PRO HIS PHE PRO GLN PHE ASP TYR SER ALA SER SEQRES 27 B 341 SER THR ALA SEQRES 1 C 10 GLY ARG PRO ARG THR THR SER PHE ALA GLU SEQRES 1 D 10 GLY ARG PRO ARG THR THR SER PHE ALA GLU MODRES 4EKK TPO A 308 THR PHOSPHOTHREONINE MODRES 4EKK TPO B 308 THR PHOSPHOTHREONINE HET TPO A 308 11 HET TPO B 308 11 HET ANP A 501 31 HET MN A 502 1 HET MN A 503 1 HET ANP B 501 31 HET MN B 502 1 HET MN B 503 1 HETNAM TPO PHOSPHOTHREONINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MN MANGANESE (II) ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 6 MN 4(MN 2+) FORMUL 11 HOH *100(H2 O) HELIX 1 1 LYS A 183 LYS A 189 1 7 HELIX 2 2 GLU A 191 ASN A 204 1 14 HELIX 3 3 LEU A 235 ARG A 243 1 9 HELIX 4 4 SER A 246 ASN A 269 1 24 HELIX 5 5 THR A 312 LEU A 316 5 5 HELIX 6 6 ALA A 317 GLU A 322 1 6 HELIX 7 7 ALA A 329 GLY A 345 1 17 HELIX 8 8 ASP A 353 GLU A 364 1 12 HELIX 9 9 GLY A 373 LEU A 384 1 12 HELIX 10 10 ASP A 398 GLN A 404 1 7 HELIX 11 11 HIS A 405 ALA A 409 5 5 HELIX 12 12 VAL A 412 GLU A 418 1 7 HELIX 13 13 THR B 146 ASN B 148 5 3 HELIX 14 14 LYS B 183 LYS B 189 1 7 HELIX 15 15 GLU B 191 ASN B 204 1 14 HELIX 16 16 GLU B 234 ARG B 243 1 10 HELIX 17 17 SER B 246 GLU B 267 1 22 HELIX 18 18 LYS B 276 GLU B 278 5 3 HELIX 19 19 THR B 312 LEU B 316 5 5 HELIX 20 20 ALA B 317 ASP B 323 1 7 HELIX 21 21 ALA B 329 GLY B 345 1 17 HELIX 22 22 ASP B 353 GLU B 364 1 12 HELIX 23 23 GLY B 373 LEU B 384 1 12 HELIX 24 24 ASP B 398 GLN B 404 1 7 HELIX 25 25 HIS B 405 ALA B 409 5 5 HELIX 26 26 VAL B 412 GLU B 418 1 7 HELIX 27 27 ASP B 439 ALA B 444 1 6 SHEET 1 A 6 PHE A 150 LYS A 158 0 SHEET 2 A 6 GLY A 162 GLU A 169 -1 O LEU A 166 N LYS A 154 SHEET 3 A 6 TYR A 175 LYS A 182 -1 O ILE A 180 N LYS A 163 SHEET 4 A 6 ARG A 222 GLU A 228 -1 O LEU A 223 N LEU A 181 SHEET 5 A 6 LEU A 213 GLN A 218 -1 N LYS A 214 O VAL A 226 SHEET 6 A 6 TYR A 474 SER A 475 -1 O TYR A 474 N SER A 216 SHEET 1 B 3 GLY A 233 GLU A 234 0 SHEET 2 B 3 LEU A 280 LEU A 282 -1 O LEU A 282 N GLY A 233 SHEET 3 B 3 ILE A 288 ILE A 290 -1 O LYS A 289 N MET A 281 SHEET 1 C 2 CYS A 310 GLY A 311 0 SHEET 2 C 2 PHE C 8 ALA C 9 -1 O PHE C 8 N GLY A 311 SHEET 1 D 6 PHE B 150 GLY B 159 0 SHEET 2 D 6 GLY B 162 GLU B 169 -1 O LYS B 168 N GLU B 151 SHEET 3 D 6 TYR B 175 LYS B 182 -1 O TYR B 176 N VAL B 167 SHEET 4 D 6 ARG B 222 MET B 227 -1 O LEU B 223 N LEU B 181 SHEET 5 D 6 LEU B 213 GLN B 218 -1 N TYR B 215 O VAL B 226 SHEET 6 D 6 TYR B 474 SER B 475 -1 O TYR B 474 N SER B 216 SHEET 1 E 2 LEU B 280 LEU B 282 0 SHEET 2 E 2 ILE B 288 ILE B 290 -1 O LYS B 289 N MET B 281 SHEET 1 F 2 CYS B 310 GLY B 311 0 SHEET 2 F 2 PHE D 8 ALA D 9 -1 O PHE D 8 N GLY B 311 LINK C LYS A 307 N TPO A 308 1555 1555 1.33 LINK C TPO A 308 N PHE A 309 1555 1555 1.33 LINK C LYS B 307 N TPO B 308 1555 1555 1.33 LINK C TPO B 308 N PHE B 309 1555 1555 1.33 LINK O2B ANP A 501 MN MN A 503 1555 1555 2.13 LINK O2A ANP A 501 MN MN A 502 1555 1555 2.14 LINK O3G ANP A 501 MN MN A 503 1555 1555 2.23 LINK OD2 ASP A 292 MN MN A 502 1555 1555 2.26 LINK O1G ANP A 501 MN MN A 502 1555 1555 2.33 LINK OD1 ASN B 279 MN MN B 502 1555 1555 2.36 LINK OD1 ASN A 279 MN MN A 502 1555 1555 2.37 LINK O2A ANP B 501 MN MN B 502 1555 1555 2.42 LINK O2B ANP B 501 MN MN B 503 1555 1555 2.47 LINK OD2 ASP B 292 MN MN B 503 1555 1555 2.51 LINK N3B ANP B 501 MN MN B 502 1555 1555 2.51 LINK OD1 ASP A 292 MN MN A 503 1555 1555 2.54 LINK OD2 ASP A 292 MN MN A 503 1555 1555 2.59 SITE 1 AC1 18 PHE A 161 VAL A 164 ALA A 177 LYS A 179 SITE 2 AC1 18 MET A 227 GLU A 228 ALA A 230 GLU A 234 SITE 3 AC1 18 LYS A 276 ASN A 279 MET A 281 THR A 291 SITE 4 AC1 18 ASP A 292 PHE A 438 MN A 502 MN A 503 SITE 5 AC1 18 ARG C 4 SER C 7 SITE 1 AC2 3 ASN A 279 ASP A 292 ANP A 501 SITE 1 AC3 2 ASP A 292 ANP A 501 SITE 1 AC4 19 GLY B 159 VAL B 164 ALA B 177 LYS B 179 SITE 2 AC4 19 MET B 227 GLU B 228 ALA B 230 GLU B 234 SITE 3 AC4 19 LYS B 276 GLU B 278 ASN B 279 MET B 281 SITE 4 AC4 19 THR B 291 ASP B 292 PHE B 438 MN B 502 SITE 5 AC4 19 MN B 503 ARG D 4 SER D 7 SITE 1 AC5 3 ASN B 279 ASP B 292 ANP B 501 SITE 1 AC6 3 ASP B 292 ANP B 501 SER D 7 CRYST1 86.637 55.853 91.402 90.00 103.43 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011542 0.000000 0.002756 0.00000 SCALE2 0.000000 0.017904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011248 0.00000