PDB Short entry for 4EMO HEADER PROTEIN BINDING 12-APR-12 4EMO TITLE CRYSTAL STRUCTURE OF THE PH DOMAIN OF SHARPIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHARPIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SHANK-ASSOCIATED RH DOMAIN-INTERACTING PROTEIN, SHANK- COMPND 5 INTERACTING PROTEIN-LIKE 1, HSIPL1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSEC0216, SHARPIN, SIPL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS PLECKSTRIN HOMOLOGY (PH) DOMAIN, LUBAC, SIPL1, LINEAR UBIQUITIN, KEYWDS 2 HOIL-1L, HOIP, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.STIEGLITZ,L.F.HAIRE,I.DIKIC,K.RITTINGER REVDAT 3 25-JUL-12 4EMO 1 JRNL REVDAT 2 16-MAY-12 4EMO 1 JRNL REVDAT 1 02-MAY-12 4EMO 0 JRNL AUTH B.STIEGLITZ,L.F.HAIRE,I.DIKIC,K.RITTINGER JRNL TITL STRUCTURAL ANALYSIS OF SHARPIN, A SUBUNIT OF A LARGE JRNL TITL 2 MULTI-PROTEIN E3 UBIQUITIN LIGASE, REVEALS A NOVEL JRNL TITL 3 DIMERIZATION FUNCTION FOR THE PLECKSTRIN HOMOLOGY SUPERFOLD. JRNL REF J.BIOL.CHEM. V. 287 20823 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22549881 JRNL DOI 10.1074/JBC.M112.359547 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 29888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1520 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1794 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.362 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3264 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4452 ; 2.135 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 6.895 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;36.285 ;22.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;19.235 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;22.106 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2548 ; 0.011 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-12. REMARK 100 THE RCSB ID CODE IS RCSB071810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4M SODIUM FORMATE, PH 7.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.40650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.77500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.77500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 167.10975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.77500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.77500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.70325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.77500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.77500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 167.10975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.77500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.77500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.70325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 111.40650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 ASP A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 GLU A 122 REMARK 465 GLY A 123 REMARK 465 GLN A 124 REMARK 465 ASN A 125 REMARK 465 GLY A 126 REMARK 465 SER A 127 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 ALA B 11 REMARK 465 ALA B 12 REMARK 465 SER B 13 REMARK 465 ASP B 14 REMARK 465 LEU B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 PRO B 35 REMARK 465 ASP B 36 REMARK 465 ALA B 63 REMARK 465 GLY B 64 REMARK 465 PRO B 65 REMARK 465 GLY B 66 REMARK 465 ASN B 125 REMARK 465 GLY B 126 REMARK 465 SER B 127 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 ALA C 33 REMARK 465 GLY C 34 REMARK 465 PRO C 35 REMARK 465 ASP C 36 REMARK 465 GLU C 122 REMARK 465 GLY C 123 REMARK 465 GLN C 124 REMARK 465 ASN C 125 REMARK 465 GLY C 126 REMARK 465 SER C 127 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MSE D 1 REMARK 465 ALA D 2 REMARK 465 PRO D 3 REMARK 465 PRO D 4 REMARK 465 ALA D 5 REMARK 465 GLY D 6 REMARK 465 GLY D 7 REMARK 465 ALA D 8 REMARK 465 ALA D 9 REMARK 465 ALA D 10 REMARK 465 ALA D 11 REMARK 465 ALA D 12 REMARK 465 SER D 13 REMARK 465 ASP D 14 REMARK 465 PRO D 35 REMARK 465 ASP D 36 REMARK 465 GLU D 122 REMARK 465 GLY D 123 REMARK 465 GLN D 124 REMARK 465 ASN D 125 REMARK 465 GLY D 126 REMARK 465 SER D 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 211 O HOH B 218 2.13 REMARK 500 OD2 ASP C 49 NE ARG C 52 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 25 CG HIS B 25 CD2 0.059 REMARK 500 HIS B 87 CG HIS B 87 CD2 0.060 REMARK 500 HIS B 102 CG HIS B 102 CD2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 101 CG - SE - CE ANGL. DEV. = -23.5 DEGREES REMARK 500 LEU B 58 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG B 111 NE - CZ - NH1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG B 111 NE - CZ - NH2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG C 82 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 MSE C 101 CA - CB - CG ANGL. DEV. = -19.0 DEGREES REMARK 500 ARG C 111 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 ARG C 111 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG D 82 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG D 82 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 MSE D 101 CG - SE - CE ANGL. DEV. = -22.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 18 53.38 -158.20 REMARK 500 PRO D 65 -62.18 -28.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 18 ALA A 19 -146.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR C 80 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 4EMO A 1 127 UNP Q9H0F6 SHRPN_HUMAN 1 127 DBREF 4EMO B 1 127 UNP Q9H0F6 SHRPN_HUMAN 1 127 DBREF 4EMO C 1 127 UNP Q9H0F6 SHRPN_HUMAN 1 127 DBREF 4EMO D 1 127 UNP Q9H0F6 SHRPN_HUMAN 1 127 SEQADV 4EMO GLY A -1 UNP Q9H0F6 EXPRESSION TAG SEQADV 4EMO SER A 0 UNP Q9H0F6 EXPRESSION TAG SEQADV 4EMO MSE A 22 UNP Q9H0F6 LEU 22 ENGINEERED MUTATION SEQADV 4EMO MSE A 101 UNP Q9H0F6 LEU 101 ENGINEERED MUTATION SEQADV 4EMO GLY B -1 UNP Q9H0F6 EXPRESSION TAG SEQADV 4EMO SER B 0 UNP Q9H0F6 EXPRESSION TAG SEQADV 4EMO MSE B 22 UNP Q9H0F6 LEU 22 ENGINEERED MUTATION SEQADV 4EMO MSE B 101 UNP Q9H0F6 LEU 101 ENGINEERED MUTATION SEQADV 4EMO GLY C -1 UNP Q9H0F6 EXPRESSION TAG SEQADV 4EMO SER C 0 UNP Q9H0F6 EXPRESSION TAG SEQADV 4EMO MSE C 22 UNP Q9H0F6 LEU 22 ENGINEERED MUTATION SEQADV 4EMO MSE C 101 UNP Q9H0F6 LEU 101 ENGINEERED MUTATION SEQADV 4EMO GLY D -1 UNP Q9H0F6 EXPRESSION TAG SEQADV 4EMO SER D 0 UNP Q9H0F6 EXPRESSION TAG SEQADV 4EMO MSE D 22 UNP Q9H0F6 LEU 22 ENGINEERED MUTATION SEQADV 4EMO MSE D 101 UNP Q9H0F6 LEU 101 ENGINEERED MUTATION SEQRES 1 A 129 GLY SER MSE ALA PRO PRO ALA GLY GLY ALA ALA ALA ALA SEQRES 2 A 129 ALA SER ASP LEU GLY SER ALA ALA VAL LEU MSE ALA VAL SEQRES 3 A 129 HIS ALA ALA VAL ARG PRO LEU GLY ALA GLY PRO ASP ALA SEQRES 4 A 129 GLU ALA GLN LEU ARG ARG LEU GLN LEU SER ALA ASP PRO SEQRES 5 A 129 GLU ARG PRO GLY ARG PHE ARG LEU GLU LEU LEU GLY ALA SEQRES 6 A 129 GLY PRO GLY ALA VAL ASN LEU GLU TRP PRO LEU GLU SER SEQRES 7 A 129 VAL SER TYR THR ILE ARG GLY PRO THR GLN HIS GLU LEU SEQRES 8 A 129 GLN PRO PRO PRO GLY GLY PRO GLY THR LEU SER MSE HIS SEQRES 9 A 129 PHE LEU ASN PRO GLN GLU ALA GLN ARG TRP ALA VAL LEU SEQRES 10 A 129 VAL ARG GLY ALA THR VAL GLU GLY GLN ASN GLY SER SEQRES 1 B 129 GLY SER MSE ALA PRO PRO ALA GLY GLY ALA ALA ALA ALA SEQRES 2 B 129 ALA SER ASP LEU GLY SER ALA ALA VAL LEU MSE ALA VAL SEQRES 3 B 129 HIS ALA ALA VAL ARG PRO LEU GLY ALA GLY PRO ASP ALA SEQRES 4 B 129 GLU ALA GLN LEU ARG ARG LEU GLN LEU SER ALA ASP PRO SEQRES 5 B 129 GLU ARG PRO GLY ARG PHE ARG LEU GLU LEU LEU GLY ALA SEQRES 6 B 129 GLY PRO GLY ALA VAL ASN LEU GLU TRP PRO LEU GLU SER SEQRES 7 B 129 VAL SER TYR THR ILE ARG GLY PRO THR GLN HIS GLU LEU SEQRES 8 B 129 GLN PRO PRO PRO GLY GLY PRO GLY THR LEU SER MSE HIS SEQRES 9 B 129 PHE LEU ASN PRO GLN GLU ALA GLN ARG TRP ALA VAL LEU SEQRES 10 B 129 VAL ARG GLY ALA THR VAL GLU GLY GLN ASN GLY SER SEQRES 1 C 129 GLY SER MSE ALA PRO PRO ALA GLY GLY ALA ALA ALA ALA SEQRES 2 C 129 ALA SER ASP LEU GLY SER ALA ALA VAL LEU MSE ALA VAL SEQRES 3 C 129 HIS ALA ALA VAL ARG PRO LEU GLY ALA GLY PRO ASP ALA SEQRES 4 C 129 GLU ALA GLN LEU ARG ARG LEU GLN LEU SER ALA ASP PRO SEQRES 5 C 129 GLU ARG PRO GLY ARG PHE ARG LEU GLU LEU LEU GLY ALA SEQRES 6 C 129 GLY PRO GLY ALA VAL ASN LEU GLU TRP PRO LEU GLU SER SEQRES 7 C 129 VAL SER TYR THR ILE ARG GLY PRO THR GLN HIS GLU LEU SEQRES 8 C 129 GLN PRO PRO PRO GLY GLY PRO GLY THR LEU SER MSE HIS SEQRES 9 C 129 PHE LEU ASN PRO GLN GLU ALA GLN ARG TRP ALA VAL LEU SEQRES 10 C 129 VAL ARG GLY ALA THR VAL GLU GLY GLN ASN GLY SER SEQRES 1 D 129 GLY SER MSE ALA PRO PRO ALA GLY GLY ALA ALA ALA ALA SEQRES 2 D 129 ALA SER ASP LEU GLY SER ALA ALA VAL LEU MSE ALA VAL SEQRES 3 D 129 HIS ALA ALA VAL ARG PRO LEU GLY ALA GLY PRO ASP ALA SEQRES 4 D 129 GLU ALA GLN LEU ARG ARG LEU GLN LEU SER ALA ASP PRO SEQRES 5 D 129 GLU ARG PRO GLY ARG PHE ARG LEU GLU LEU LEU GLY ALA SEQRES 6 D 129 GLY PRO GLY ALA VAL ASN LEU GLU TRP PRO LEU GLU SER SEQRES 7 D 129 VAL SER TYR THR ILE ARG GLY PRO THR GLN HIS GLU LEU SEQRES 8 D 129 GLN PRO PRO PRO GLY GLY PRO GLY THR LEU SER MSE HIS SEQRES 9 D 129 PHE LEU ASN PRO GLN GLU ALA GLN ARG TRP ALA VAL LEU SEQRES 10 D 129 VAL ARG GLY ALA THR VAL GLU GLY GLN ASN GLY SER MODRES 4EMO MSE A 22 MET SELENOMETHIONINE MODRES 4EMO MSE A 101 MET SELENOMETHIONINE MODRES 4EMO MSE B 22 MET SELENOMETHIONINE MODRES 4EMO MSE B 101 MET SELENOMETHIONINE MODRES 4EMO MSE C 1 MET SELENOMETHIONINE MODRES 4EMO MSE C 22 MET SELENOMETHIONINE MODRES 4EMO MSE C 101 MET SELENOMETHIONINE MODRES 4EMO MSE D 22 MET SELENOMETHIONINE MODRES 4EMO MSE D 101 MET SELENOMETHIONINE HET MSE A 22 8 HET MSE A 101 8 HET MSE B 22 8 HET MSE B 101 8 HET MSE C 1 8 HET MSE C 22 8 HET MSE C 101 8 HET MSE D 22 8 HET MSE D 101 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 5 HOH *86(H2 O) HELIX 1 1 GLY A 32 GLY A 34 5 3 HELIX 2 2 GLU A 75 VAL A 77 5 3 HELIX 3 3 ASN A 105 THR A 120 1 16 HELIX 4 4 GLU B 75 VAL B 77 5 3 HELIX 5 5 ASN B 105 GLY B 123 1 19 HELIX 6 6 ALA C 12 GLY C 16 1 5 HELIX 7 7 GLU C 75 VAL C 77 5 3 HELIX 8 8 ASN C 105 VAL C 121 1 17 HELIX 9 9 GLU D 75 VAL D 77 5 3 HELIX 10 10 ASN D 105 VAL D 121 1 17 SHEET 1 A 7 LEU A 70 PRO A 73 0 SHEET 2 A 7 PHE A 56 LEU A 60 -1 N LEU A 60 O LEU A 70 SHEET 3 A 7 GLN A 40 ALA A 48 -1 N GLN A 45 O GLU A 59 SHEET 4 A 7 VAL A 20 PRO A 30 -1 N ALA A 26 O ARG A 42 SHEET 5 A 7 LEU A 99 PHE A 103 -1 O HIS A 102 N ALA A 27 SHEET 6 A 7 GLN A 86 GLN A 90 -1 N LEU A 89 O LEU A 99 SHEET 7 A 7 SER A 78 GLY A 83 -1 N SER A 78 O GLN A 90 SHEET 1 B 7 LEU B 70 PRO B 73 0 SHEET 2 B 7 PHE B 56 LEU B 61 -1 N LEU B 60 O LEU B 70 SHEET 3 B 7 GLN B 40 ALA B 48 -1 N ARG B 43 O LEU B 61 SHEET 4 B 7 VAL B 20 PRO B 30 -1 N VAL B 24 O LEU B 44 SHEET 5 B 7 LEU B 99 PHE B 103 -1 O SER B 100 N ARG B 29 SHEET 6 B 7 GLN B 86 GLN B 90 -1 N LEU B 89 O LEU B 99 SHEET 7 B 7 SER B 78 GLY B 83 -1 N SER B 78 O GLN B 90 SHEET 1 C 5 LEU B 70 PRO B 73 0 SHEET 2 C 5 PHE B 56 LEU B 61 -1 N LEU B 60 O LEU B 70 SHEET 3 C 5 GLN B 40 ALA B 48 -1 N ARG B 43 O LEU B 61 SHEET 4 C 5 VAL B 20 PRO B 30 -1 N VAL B 24 O LEU B 44 SHEET 5 C 5 ALA C 10 ALA C 11 1 O ALA C 10 N LEU B 21 SHEET 1 D 7 ASN C 69 PRO C 73 0 SHEET 2 D 7 PHE C 56 LEU C 61 -1 N LEU C 58 O TRP C 72 SHEET 3 D 7 GLN C 40 ALA C 48 -1 N ARG C 43 O LEU C 61 SHEET 4 D 7 VAL C 20 PRO C 30 -1 N VAL C 24 O LEU C 44 SHEET 5 D 7 LEU C 99 HIS C 102 -1 O HIS C 102 N ALA C 27 SHEET 6 D 7 GLN C 86 GLN C 90 -1 N LEU C 89 O LEU C 99 SHEET 7 D 7 SER C 78 GLY C 83 -1 N THR C 80 O GLU C 88 SHEET 1 E 7 LEU D 70 PRO D 73 0 SHEET 2 E 7 PHE D 56 LEU D 60 -1 N LEU D 58 O TRP D 72 SHEET 3 E 7 GLN D 40 ALA D 48 -1 N SER D 47 O ARG D 57 SHEET 4 E 7 VAL D 20 PRO D 30 -1 N VAL D 24 O LEU D 44 SHEET 5 E 7 LEU D 99 HIS D 102 -1 O SER D 100 N ARG D 29 SHEET 6 E 7 GLN D 86 GLN D 90 -1 N HIS D 87 O MSE D 101 SHEET 7 E 7 SER D 78 GLY D 83 -1 N SER D 78 O GLN D 90 LINK C LEU A 21 N MSE A 22 1555 1555 1.32 LINK C MSE A 22 N ALA A 23 1555 1555 1.33 LINK C SER A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N HIS A 102 1555 1555 1.32 LINK C LEU B 21 N MSE B 22 1555 1555 1.36 LINK C MSE B 22 N ALA B 23 1555 1555 1.34 LINK C SER B 100 N MSE B 101 1555 1555 1.33 LINK C MSE B 101 N HIS B 102 1555 1555 1.32 LINK C MSE C 1 N ALA C 2 1555 1555 1.33 LINK C LEU C 21 N MSE C 22 1555 1555 1.35 LINK C MSE C 22 N ALA C 23 1555 1555 1.33 LINK C SER C 100 N MSE C 101 1555 1555 1.33 LINK C MSE C 101 N HIS C 102 1555 1555 1.34 LINK C LEU D 21 N MSE D 22 1555 1555 1.34 LINK C MSE D 22 N ALA D 23 1555 1555 1.32 LINK C SER D 100 N MSE D 101 1555 1555 1.34 LINK C MSE D 101 N HIS D 102 1555 1555 1.32 CISPEP 1 ALA B 67 VAL B 68 0 -5.65 CISPEP 2 PRO C 3 PRO C 4 0 2.56 CRYST1 61.550 61.550 222.813 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004488 0.00000