PDB Short entry for 4ENM HEADER DNA BINDING PROTEIN/DNA 13-APR-12 4ENM TITLE CRYSTAL STRUCTURE OF S. POMBE ATL1 IN COMPLEX WITH DAMAGED DNA TITLE 2 CONTAINING O6-BENZYLGUANINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALKYLTRANSFERASE-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*TP*GP*(BZG)P*CP*TP*AP*GP*TP*A)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: ATL1, SPAC1250.04C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS ALKYLTRANSFERASE, DNA REPAIR, NUCLEOTIDE EXCISION REPAIR, NER, BASE KEYWDS 2 REPAIR, DNA, DNA DAMAGE, GUANINE, ALKYLATION, DNA BINDING PROTEIN- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.L.TUBBS,A.S.ARVAI,J.A.TAINER REVDAT 3 13-SEP-23 4ENM 1 DBREF SEQADV REVDAT 2 01-AUG-12 4ENM 1 JRNL REVDAT 1 20-JUN-12 4ENM 0 JRNL AUTH V.F.LATYPOV,J.L.TUBBS,A.J.WATSON,A.S.MARRIOTT,G.MCGOWN, JRNL AUTH 2 M.THORNCROFT,O.J.WILKINSON,P.SENTHONG,A.BUTT,A.S.ARVAI, JRNL AUTH 3 C.L.MILLINGTON,A.C.POVEY,D.M.WILLIAMS,M.F.SANTIBANEZ-KOREF, JRNL AUTH 4 J.A.TAINER,G.P.MARGISON JRNL TITL ATL1 REGULATES CHOICE BETWEEN GLOBAL GENOME AND JRNL TITL 2 TRANSCRIPTION-COUPLED REPAIR OF O(6)-ALKYLGUANINES. JRNL REF MOL.CELL V. 47 50 2012 JRNL REFN ISSN 1097-2765 JRNL PMID 22658721 JRNL DOI 10.1016/J.MOLCEL.2012.04.028 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 5915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0370 - 4.5067 0.98 1567 175 0.1593 0.2434 REMARK 3 2 4.5067 - 3.5779 0.99 1464 160 0.1583 0.2348 REMARK 3 3 3.5779 - 3.1259 0.96 1365 153 0.1928 0.2411 REMARK 3 4 3.1259 - 2.8402 0.66 929 102 0.2978 0.3752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 67.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.00500 REMARK 3 B22 (A**2) : 15.00500 REMARK 3 B33 (A**2) : -30.01010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1512 REMARK 3 ANGLE : 1.275 2151 REMARK 3 CHIRALITY : 0.065 226 REMARK 3 PLANARITY : 0.004 187 REMARK 3 DIHEDRAL : 25.572 616 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 23 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:6) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7237 -23.2597 19.6716 REMARK 3 T TENSOR REMARK 3 T11: 0.4816 T22: 0.9007 REMARK 3 T33: 0.8785 T12: -0.1258 REMARK 3 T13: 0.3332 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.1182 L22: 2.0804 REMARK 3 L33: 1.8666 L12: -1.0983 REMARK 3 L13: 0.6618 L23: -1.9062 REMARK 3 S TENSOR REMARK 3 S11: -1.3337 S12: -1.6990 S13: -0.7292 REMARK 3 S21: 0.7297 S22: -0.0830 S23: -0.4809 REMARK 3 S31: -0.4833 S32: -0.9554 S33: -0.0908 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 7:11) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1168 -19.1712 13.9637 REMARK 3 T TENSOR REMARK 3 T11: 0.7093 T22: 0.8646 REMARK 3 T33: 0.6683 T12: 0.1351 REMARK 3 T13: -0.0528 T23: -0.2278 REMARK 3 L TENSOR REMARK 3 L11: 0.0474 L22: 0.9452 REMARK 3 L33: 0.3273 L12: -0.2179 REMARK 3 L13: 0.0129 L23: -0.0480 REMARK 3 S TENSOR REMARK 3 S11: -1.1288 S12: 0.6982 S13: 1.1224 REMARK 3 S21: 0.9969 S22: -0.7899 S23: -0.9156 REMARK 3 S31: -0.0067 S32: -1.8900 S33: 0.0218 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 12:18) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2269 -13.0915 5.9153 REMARK 3 T TENSOR REMARK 3 T11: 0.7146 T22: 0.8737 REMARK 3 T33: 0.8804 T12: 0.0289 REMARK 3 T13: 0.2315 T23: 0.0832 REMARK 3 L TENSOR REMARK 3 L11: 0.1721 L22: 0.7085 REMARK 3 L33: 0.0974 L12: 0.0900 REMARK 3 L13: -0.0050 L23: -0.2686 REMARK 3 S TENSOR REMARK 3 S11: 0.7937 S12: -1.2628 S13: 3.0528 REMARK 3 S21: 1.2530 S22: -0.9719 S23: -1.3877 REMARK 3 S31: -2.8951 S32: -0.1264 S33: -0.0320 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 19:24) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5143 -14.8439 -2.8125 REMARK 3 T TENSOR REMARK 3 T11: 0.9591 T22: 0.8404 REMARK 3 T33: 1.0479 T12: 0.3669 REMARK 3 T13: 0.0874 T23: 0.1312 REMARK 3 L TENSOR REMARK 3 L11: 0.6579 L22: 0.0703 REMARK 3 L33: 0.0403 L12: 0.2183 REMARK 3 L13: -0.3093 L23: -0.1117 REMARK 3 S TENSOR REMARK 3 S11: -0.1762 S12: -0.5342 S13: 2.3566 REMARK 3 S21: 0.2695 S22: 1.2354 S23: -0.5179 REMARK 3 S31: -2.3304 S32: -0.4724 S33: 0.0162 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 25:31) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7698 -23.2259 4.9532 REMARK 3 T TENSOR REMARK 3 T11: 0.4196 T22: 0.7021 REMARK 3 T33: 0.9898 T12: 0.0121 REMARK 3 T13: 0.2039 T23: -0.1707 REMARK 3 L TENSOR REMARK 3 L11: 1.7530 L22: 0.7927 REMARK 3 L33: 7.9810 L12: -1.0578 REMARK 3 L13: 3.4719 L23: -1.3196 REMARK 3 S TENSOR REMARK 3 S11: 0.2744 S12: -0.5554 S13: 0.7418 REMARK 3 S21: -1.3521 S22: -0.8397 S23: -0.6916 REMARK 3 S31: 3.8271 S32: 0.6019 S33: 0.0592 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 32:37) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8858 -27.6025 11.5308 REMARK 3 T TENSOR REMARK 3 T11: 0.2661 T22: 0.5971 REMARK 3 T33: 0.8304 T12: 0.1505 REMARK 3 T13: 0.0282 T23: 0.0823 REMARK 3 L TENSOR REMARK 3 L11: 0.2184 L22: 2.3685 REMARK 3 L33: 2.1655 L12: 0.4165 REMARK 3 L13: -0.0291 L23: 1.1669 REMARK 3 S TENSOR REMARK 3 S11: 0.5723 S12: 0.4139 S13: 1.0964 REMARK 3 S21: -1.8493 S22: -1.0350 S23: -3.2490 REMARK 3 S31: 0.2043 S32: 3.2761 S33: -0.0298 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 38:43) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9272 -28.7356 9.3148 REMARK 3 T TENSOR REMARK 3 T11: 0.5042 T22: 0.8938 REMARK 3 T33: 0.7001 T12: -0.0337 REMARK 3 T13: 0.2346 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 0.1667 L22: 0.1711 REMARK 3 L33: 0.4690 L12: 0.0026 REMARK 3 L13: 0.2950 L23: -0.0969 REMARK 3 S TENSOR REMARK 3 S11: -0.4458 S12: -2.4498 S13: 0.7331 REMARK 3 S21: -0.4759 S22: 0.4478 S23: 0.0359 REMARK 3 S31: 1.6588 S32: -0.5029 S33: 0.0028 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 44:50) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2070 -20.5583 10.9369 REMARK 3 T TENSOR REMARK 3 T11: 0.3829 T22: 1.1691 REMARK 3 T33: 1.0793 T12: -0.0352 REMARK 3 T13: 0.3378 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 0.7143 L22: 1.1117 REMARK 3 L33: 2.2850 L12: 0.1607 REMARK 3 L13: 0.0812 L23: 1.3556 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: -1.5971 S13: 0.4847 REMARK 3 S21: 0.5397 S22: 0.4503 S23: 1.2310 REMARK 3 S31: 0.9346 S32: -1.9967 S33: -0.0222 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 51:55) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2130 -11.6590 8.4439 REMARK 3 T TENSOR REMARK 3 T11: 1.1922 T22: 1.4971 REMARK 3 T33: 0.8613 T12: 0.3022 REMARK 3 T13: 0.2738 T23: -0.2349 REMARK 3 L TENSOR REMARK 3 L11: -0.0032 L22: 1.3935 REMARK 3 L33: 0.0065 L12: -0.1432 REMARK 3 L13: 0.0360 L23: -0.1171 REMARK 3 S TENSOR REMARK 3 S11: -0.4559 S12: 0.0537 S13: 2.6185 REMARK 3 S21: 0.5828 S22: 0.3957 S23: 1.6532 REMARK 3 S31: 2.3166 S32: -0.9221 S33: -0.0172 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 56:60) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0324 -17.4883 1.0380 REMARK 3 T TENSOR REMARK 3 T11: 0.5869 T22: 0.6332 REMARK 3 T33: 0.7769 T12: 0.1555 REMARK 3 T13: 0.0344 T23: -0.0754 REMARK 3 L TENSOR REMARK 3 L11: 0.2878 L22: 0.4384 REMARK 3 L33: 0.1414 L12: -0.0005 REMARK 3 L13: 0.0435 L23: 0.2767 REMARK 3 S TENSOR REMARK 3 S11: 0.3086 S12: -0.7365 S13: 0.7200 REMARK 3 S21: -1.2596 S22: -0.9685 S23: -1.0581 REMARK 3 S31: -0.9894 S32: 0.0705 S33: -0.0036 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 61:66) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7688 -27.3898 -5.1953 REMARK 3 T TENSOR REMARK 3 T11: 0.9240 T22: 1.0987 REMARK 3 T33: 0.9312 T12: -0.3889 REMARK 3 T13: 0.1863 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 0.1663 L22: 0.0135 REMARK 3 L33: 0.1101 L12: 0.0442 REMARK 3 L13: -0.1317 L23: -0.0458 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.4569 S13: -1.8999 REMARK 3 S21: 1.2768 S22: 0.1272 S23: 0.6626 REMARK 3 S31: 1.9716 S32: -2.4082 S33: -0.0011 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 67:74) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8673 -28.2926 1.3971 REMARK 3 T TENSOR REMARK 3 T11: 0.7358 T22: 1.8097 REMARK 3 T33: 1.1768 T12: 0.0502 REMARK 3 T13: 0.0250 T23: -0.1050 REMARK 3 L TENSOR REMARK 3 L11: 0.0107 L22: -0.0185 REMARK 3 L33: 0.2113 L12: -0.0733 REMARK 3 L13: 0.0393 L23: -0.0351 REMARK 3 S TENSOR REMARK 3 S11: -1.7176 S12: 2.5127 S13: -3.5594 REMARK 3 S21: -2.6828 S22: 0.5420 S23: 1.2876 REMARK 3 S31: 1.9880 S32: -0.4288 S33: 0.0074 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 75:79) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0891 -20.2343 -3.1971 REMARK 3 T TENSOR REMARK 3 T11: 0.4705 T22: 1.5720 REMARK 3 T33: 0.8862 T12: 0.2173 REMARK 3 T13: -0.1918 T23: -0.3500 REMARK 3 L TENSOR REMARK 3 L11: 0.3085 L22: 0.2177 REMARK 3 L33: 0.2468 L12: -0.1029 REMARK 3 L13: 0.2636 L23: -0.0295 REMARK 3 S TENSOR REMARK 3 S11: -0.2171 S12: -2.8637 S13: 0.3961 REMARK 3 S21: -0.1643 S22: -0.6055 S23: -0.9895 REMARK 3 S31: 0.0123 S32: -0.5276 S33: 0.0289 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 80:85) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4322 -12.9598 -5.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.9989 T22: 1.5658 REMARK 3 T33: 1.3561 T12: 0.3428 REMARK 3 T13: 0.0373 T23: 0.1174 REMARK 3 L TENSOR REMARK 3 L11: 0.1302 L22: 0.7284 REMARK 3 L33: 0.2473 L12: 0.2606 REMARK 3 L13: 0.1803 L23: -0.0074 REMARK 3 S TENSOR REMARK 3 S11: -1.7691 S12: -0.7895 S13: 0.2658 REMARK 3 S21: -1.4721 S22: 0.7448 S23: 2.8280 REMARK 3 S31: -0.6279 S32: -0.7577 S33: 0.0089 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 86:91) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5729 -19.6425 -13.1572 REMARK 3 T TENSOR REMARK 3 T11: 1.3855 T22: 1.8061 REMARK 3 T33: 0.8669 T12: -0.4561 REMARK 3 T13: -0.1202 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.3258 L22: 0.0284 REMARK 3 L33: 0.0236 L12: 0.0762 REMARK 3 L13: 0.1159 L23: 0.0160 REMARK 3 S TENSOR REMARK 3 S11: -0.2449 S12: 1.1116 S13: 0.3439 REMARK 3 S21: -3.9364 S22: -0.4796 S23: -1.6346 REMARK 3 S31: -0.4667 S32: -0.4999 S33: 0.0287 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 92:98) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2125 -28.3011 -11.7942 REMARK 3 T TENSOR REMARK 3 T11: 0.7326 T22: 1.7639 REMARK 3 T33: 1.3979 T12: 0.0666 REMARK 3 T13: 0.2272 T23: -0.4785 REMARK 3 L TENSOR REMARK 3 L11: 0.9057 L22: 1.1845 REMARK 3 L33: 0.1034 L12: 1.0170 REMARK 3 L13: 0.2578 L23: 0.1567 REMARK 3 S TENSOR REMARK 3 S11: -0.4760 S12: -0.1297 S13: -2.3767 REMARK 3 S21: -0.6476 S22: -0.7136 S23: 2.2951 REMARK 3 S31: -0.2464 S32: -1.9677 S33: 0.0304 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 99:103) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6489 -20.3521 -10.8029 REMARK 3 T TENSOR REMARK 3 T11: 1.2989 T22: 1.4422 REMARK 3 T33: 0.6986 T12: -0.1631 REMARK 3 T13: 0.2675 T23: 0.2272 REMARK 3 L TENSOR REMARK 3 L11: 0.0163 L22: 0.1305 REMARK 3 L33: 0.5319 L12: -0.0445 REMARK 3 L13: -0.0399 L23: 0.2387 REMARK 3 S TENSOR REMARK 3 S11: -0.5081 S12: -0.0078 S13: -0.1470 REMARK 3 S21: -1.9656 S22: 0.0426 S23: -0.4838 REMARK 3 S31: 0.4121 S32: -0.2167 S33: -0.0268 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 104:108) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5310 -16.1756 -3.2393 REMARK 3 T TENSOR REMARK 3 T11: 0.9520 T22: 0.9622 REMARK 3 T33: 2.1272 T12: -0.1248 REMARK 3 T13: 0.2361 T23: 0.1446 REMARK 3 L TENSOR REMARK 3 L11: 0.6948 L22: -0.0327 REMARK 3 L33: 0.1589 L12: -0.1748 REMARK 3 L13: -0.3982 L23: 0.1022 REMARK 3 S TENSOR REMARK 3 S11: 2.2132 S12: 0.6783 S13: 0.7639 REMARK 3 S21: 0.7536 S22: -0.3797 S23: -0.5230 REMARK 3 S31: 0.3423 S32: 0.3807 S33: -0.0020 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN B AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8433 -45.2598 17.8018 REMARK 3 T TENSOR REMARK 3 T11: 2.0610 T22: 1.3575 REMARK 3 T33: 1.1672 T12: -0.1086 REMARK 3 T13: 0.4797 T23: 0.1234 REMARK 3 L TENSOR REMARK 3 L11: 0.1947 L22: 1.2946 REMARK 3 L33: 0.0327 L12: 0.5874 REMARK 3 L13: 0.1866 L23: 0.2492 REMARK 3 S TENSOR REMARK 3 S11: -3.1726 S12: 1.2493 S13: -2.9442 REMARK 3 S21: -2.7494 S22: 2.0767 S23: -0.1284 REMARK 3 S31: 2.7693 S32: -1.1178 S33: 0.0016 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN B AND RESID 5:9) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9601 -32.1910 5.3387 REMARK 3 T TENSOR REMARK 3 T11: 0.6710 T22: 1.1441 REMARK 3 T33: 0.8206 T12: -0.3484 REMARK 3 T13: 0.0749 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.5140 L22: 2.7354 REMARK 3 L33: 3.0680 L12: 0.3951 REMARK 3 L13: 1.5198 L23: -1.7034 REMARK 3 S TENSOR REMARK 3 S11: 0.3593 S12: -0.2290 S13: 0.4679 REMARK 3 S21: -0.2935 S22: 0.0571 S23: 0.2282 REMARK 3 S31: 1.4154 S32: -1.5732 S33: 0.0016 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN B AND RESID 10:13) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8309 -40.6053 -5.7709 REMARK 3 T TENSOR REMARK 3 T11: 1.3185 T22: 1.1724 REMARK 3 T33: 1.2130 T12: 0.1398 REMARK 3 T13: 0.3008 T23: -0.2990 REMARK 3 L TENSOR REMARK 3 L11: 0.3115 L22: 0.2292 REMARK 3 L33: 0.1724 L12: -0.2794 REMARK 3 L13: 0.3733 L23: -0.2108 REMARK 3 S TENSOR REMARK 3 S11: 0.6662 S12: 0.2336 S13: 0.1552 REMARK 3 S21: -0.1292 S22: 0.3498 S23: -2.3349 REMARK 3 S31: 2.2228 S32: -0.6664 S33: 0.0047 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN C AND RESID 14:19) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0588 -41.2727 -7.3715 REMARK 3 T TENSOR REMARK 3 T11: 1.1577 T22: 1.3786 REMARK 3 T33: 1.1183 T12: 0.1231 REMARK 3 T13: 0.2627 T23: -0.1409 REMARK 3 L TENSOR REMARK 3 L11: 2.6077 L22: 1.5726 REMARK 3 L33: 0.6724 L12: 1.5676 REMARK 3 L13: 0.0550 L23: 0.7586 REMARK 3 S TENSOR REMARK 3 S11: 0.8281 S12: 1.9334 S13: -1.0497 REMARK 3 S21: 0.2809 S22: 0.7547 S23: 0.6453 REMARK 3 S31: 1.9015 S32: -2.7940 S33: 0.0079 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN C AND RESID 20:26) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6123 -36.6280 14.4888 REMARK 3 T TENSOR REMARK 3 T11: 1.0685 T22: 1.0884 REMARK 3 T33: 1.0297 T12: -0.1908 REMARK 3 T13: 0.3473 T23: 0.1830 REMARK 3 L TENSOR REMARK 3 L11: 3.5534 L22: 2.7958 REMARK 3 L33: 2.3070 L12: 2.7550 REMARK 3 L13: 2.0358 L23: 0.3549 REMARK 3 S TENSOR REMARK 3 S11: -0.2734 S12: -0.3098 S13: 0.0602 REMARK 3 S21: -0.2388 S22: 0.7466 S23: 0.4221 REMARK 3 S31: 2.6294 S32: -1.3279 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ENM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : CURVED CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6178 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% MPEG 2000, 0.2M IMIDAZOLE-MALATE, REMARK 280 30% XYLOSE, PH 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.01700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 158.03400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 118.52550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 197.54250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.50850 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.01700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 158.03400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 197.54250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 118.52550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 39.50850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 109 REMARK 465 SER A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 3 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC B 3 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT B 9 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DT B 9 O4' - C1' - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DT B 9 C5 - C4 - O4 ANGL. DEV. = -4.2 DEGREES REMARK 500 DT B 12 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA B 13 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DA B 13 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC C 17 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC C 21 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DC C 22 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT C 24 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG C 26 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 -73.50 -9.39 REMARK 500 PRO A 50 -27.44 -39.13 REMARK 500 GLU A 51 54.86 -104.02 REMARK 500 SER A 72 85.38 82.27 REMARK 500 THR A 92 -174.68 -68.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ENJ RELATED DB: PDB REMARK 900 RELATED ID: 4ENK RELATED DB: PDB REMARK 900 RELATED ID: 4ENN RELATED DB: PDB DBREF 4ENM A 1 108 UNP Q9UTN9 ATL1_SCHPO 1 108 DBREF 4ENM B 1 13 PDB 4ENM 4ENM 1 13 DBREF 4ENM C 14 26 PDB 4ENM 4ENM 14 26 SEQADV 4ENM GLY A 109 UNP Q9UTN9 EXPRESSION TAG SEQADV 4ENM SER A 110 UNP Q9UTN9 EXPRESSION TAG SEQADV 4ENM HIS A 111 UNP Q9UTN9 EXPRESSION TAG SEQADV 4ENM HIS A 112 UNP Q9UTN9 EXPRESSION TAG SEQADV 4ENM HIS A 113 UNP Q9UTN9 EXPRESSION TAG SEQADV 4ENM HIS A 114 UNP Q9UTN9 EXPRESSION TAG SEQADV 4ENM HIS A 115 UNP Q9UTN9 EXPRESSION TAG SEQADV 4ENM HIS A 116 UNP Q9UTN9 EXPRESSION TAG SEQRES 1 A 116 MET ARG MET ASP GLU PHE TYR THR LYS VAL TYR ASP ALA SEQRES 2 A 116 VAL CYS GLU ILE PRO TYR GLY LYS VAL SER THR TYR GLY SEQRES 3 A 116 GLU ILE ALA ARG TYR VAL GLY MET PRO SER TYR ALA ARG SEQRES 4 A 116 GLN VAL GLY GLN ALA MET LYS HIS LEU HIS PRO GLU THR SEQRES 5 A 116 HIS VAL PRO TRP HIS ARG VAL ILE ASN SER ARG GLY THR SEQRES 6 A 116 ILE SER LYS ARG ASP ILE SER ALA GLY GLU GLN ARG GLN SEQRES 7 A 116 LYS ASP ARG LEU GLU GLU GLU GLY VAL GLU ILE TYR GLN SEQRES 8 A 116 THR SER LEU GLY GLU TYR LYS LEU ASN LEU PRO GLU TYR SEQRES 9 A 116 MET TRP LYS PRO GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 13 DG DC DC DA DT DG BZG DC DT DA DG DT DA SEQRES 1 C 13 DC DT DA DC DT DA DG DC DC DA DT DG DG HET BZG B 7 29 HETNAM BZG 6-(BENZYLOXY)-9-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO- HETNAM 2 BZG PENTOFURANOSYL)-9H-PURIN-2-AMINE HETSYN BZG O6-BENZYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE FORMUL 2 BZG C17 H20 N5 O7 P HELIX 1 1 ARG A 2 ILE A 17 1 16 HELIX 2 2 TYR A 25 VAL A 32 1 8 HELIX 3 3 TYR A 37 HIS A 47 1 11 HELIX 4 4 PRO A 55 HIS A 57 5 3 HELIX 5 5 GLU A 75 GLU A 85 1 11 HELIX 6 6 ASN A 100 MET A 105 1 6 SHEET 1 A 2 SER A 23 THR A 24 0 SHEET 2 A 2 VAL A 59 ILE A 60 1 O ILE A 60 N SER A 23 SHEET 1 B 2 TYR A 90 GLN A 91 0 SHEET 2 B 2 TYR A 97 LYS A 98 -1 O LYS A 98 N TYR A 90 CRYST1 59.900 59.900 237.051 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016694 0.009639 0.000000 0.00000 SCALE2 0.000000 0.019277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004219 0.00000