PDB Short entry for 4ERN HEADER HYDROLASE 20-APR-12 4ERN TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF HUMAN XPB/ERCC-3 TITLE 2 EXCISION REPAIR PROTEIN AT 1.80 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPB COMPND 3 SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 494-782); COMPND 6 SYNONYM: BASIC TRANSCRIPTION FACTOR 2 89 KDA SUBUNIT, BTF2 P89, DNA COMPND 7 EXCISION REPAIR PROTEIN ERCC-3, DNA REPAIR PROTEIN COMPLEMENTING XP-B COMPND 8 CELLS, TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX 89 KDA SUBUNIT, TFIIH COMPND 9 89 KDA SUBUNIT, TFIIH P89, XERODERMA PIGMENTOSUM GROUP B- COMPND 10 COMPLEMENTING PROTEIN; COMPND 11 EC: 3.6.4.12; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERCC3, XPB, XPBC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYS-S; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS HELICASE DOMAIN 2, GENERAL TRANSCRIPTION FACTOR TFIIH, NUCLEOTIDE KEYWDS 2 EXCISION REPAIR, TRANSCRIPTION COUPLED REPAIR, BASAL TRANSCRIPTION, KEYWDS 3 NUCLEUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.HILARIO,Y.LI,L.FAN REVDAT 4 13-SEP-23 4ERN 1 REMARK REVDAT 3 25-OCT-17 4ERN 1 REMARK REVDAT 2 27-MAR-13 4ERN 1 JRNL REVDAT 1 30-JAN-13 4ERN 0 JRNL AUTH E.HILARIO,Y.LI,Y.NOBUMORI,X.LIU,L.FAN JRNL TITL STRUCTURE OF THE C-TERMINAL HALF OF HUMAN XPB HELICASE AND JRNL TITL 2 THE IMPACT OF THE DISEASE-CAUSING MUTATION XP11BE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 237 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23385459 JRNL DOI 10.1107/S0907444912045040 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 22258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1134 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.5539 - 3.5925 0.96 2770 145 0.1792 0.1935 REMARK 3 2 3.5925 - 2.8548 0.97 2642 146 0.2026 0.2562 REMARK 3 3 2.8548 - 2.4949 0.98 2646 141 0.2148 0.2921 REMARK 3 4 2.4949 - 2.2672 0.99 2659 133 0.2064 0.2250 REMARK 3 5 2.2672 - 2.1050 1.00 2664 142 0.1907 0.2554 REMARK 3 6 2.1050 - 1.9810 0.98 2637 134 0.2030 0.2048 REMARK 3 7 1.9810 - 1.8819 0.97 2559 139 0.2548 0.3272 REMARK 3 8 1.8819 - 1.8001 0.97 2547 154 0.3461 0.3862 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 34.00 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48510 REMARK 3 B22 (A**2) : 0.01960 REMARK 3 B33 (A**2) : 0.46550 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1963 REMARK 3 ANGLE : 1.343 2658 REMARK 3 CHIRALITY : 0.103 288 REMARK 3 PLANARITY : 0.006 348 REMARK 3 DIHEDRAL : 15.770 766 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 502:621) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8173 3.7050 1.3845 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.1273 REMARK 3 T33: 0.1565 T12: 0.0017 REMARK 3 T13: -0.0137 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.3466 L22: 2.4702 REMARK 3 L33: 4.1541 L12: 0.5624 REMARK 3 L13: -0.5124 L23: -0.4904 REMARK 3 S TENSOR REMARK 3 S11: 0.0570 S12: 0.0180 S13: -0.1626 REMARK 3 S21: -0.0869 S22: 0.0439 S23: 0.1170 REMARK 3 S31: -0.3348 S32: 0.1057 S33: 0.0653 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 622:705) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4443 -4.7709 8.6369 REMARK 3 T TENSOR REMARK 3 T11: 0.1166 T22: 0.2250 REMARK 3 T33: 0.2734 T12: -0.0282 REMARK 3 T13: -0.0045 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 1.7152 L22: 2.1648 REMARK 3 L33: 4.1539 L12: 0.1848 REMARK 3 L13: -0.2884 L23: -1.3429 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.2592 S13: -0.4106 REMARK 3 S21: -0.0679 S22: 0.0666 S23: 0.1060 REMARK 3 S31: 0.3930 S32: -0.3942 S33: 0.0176 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 706:730) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6643 17.4024 6.4662 REMARK 3 T TENSOR REMARK 3 T11: 0.5111 T22: 0.2306 REMARK 3 T33: 0.3329 T12: -0.0224 REMARK 3 T13: 0.0507 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.9094 L22: 0.9652 REMARK 3 L33: 2.2158 L12: -0.8831 REMARK 3 L13: -0.5355 L23: -0.2866 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: 0.2326 S13: -0.2978 REMARK 3 S21: -0.1458 S22: 0.1060 S23: 0.1024 REMARK 3 S31: -1.0919 S32: -0.0582 S33: 0.1842 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ERN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000071983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.55 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 3.3.20 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 18.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : 0.48800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0, DM 6.2 REMARK 200 STARTING MODEL: 2FZL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 5.55, 0.2 M REMARK 280 AMMONIUM ACETATE, 27% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.13000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.13000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BASED ON S-100 SIZE EXCLUSION CHROMATOGRAPHY RESULTS, ERCC3 REMARK 300 FRAGMENT (494-782) EXIST AS A MONOMER IN AQUEOUS BUFFER SOLUTIONS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 494 REMARK 465 GLU A 495 REMARK 465 LEU A 496 REMARK 465 GLN A 497 REMARK 465 ASN A 498 REMARK 465 ASN A 499 REMARK 465 GLY A 500 REMARK 465 TYR A 501 REMARK 465 GLY A 731 REMARK 465 GLU A 732 REMARK 465 PHE A 733 REMARK 465 GLY A 734 REMARK 465 SER A 735 REMARK 465 ARG A 736 REMARK 465 SER A 737 REMARK 465 SER A 738 REMARK 465 GLN A 739 REMARK 465 ALA A 740 REMARK 465 SER A 741 REMARK 465 ARG A 742 REMARK 465 ARG A 743 REMARK 465 PHE A 744 REMARK 465 GLY A 745 REMARK 465 THR A 746 REMARK 465 MET A 747 REMARK 465 SER A 748 REMARK 465 SER A 749 REMARK 465 MET A 750 REMARK 465 SER A 751 REMARK 465 GLY A 752 REMARK 465 ALA A 753 REMARK 465 ASP A 754 REMARK 465 ASP A 755 REMARK 465 THR A 756 REMARK 465 VAL A 757 REMARK 465 TYR A 758 REMARK 465 MET A 759 REMARK 465 GLU A 760 REMARK 465 TYR A 761 REMARK 465 HIS A 762 REMARK 465 SER A 763 REMARK 465 SER A 764 REMARK 465 ARG A 765 REMARK 465 SER A 766 REMARK 465 LYS A 767 REMARK 465 ALA A 768 REMARK 465 PRO A 769 REMARK 465 SER A 770 REMARK 465 LYS A 771 REMARK 465 HIS A 772 REMARK 465 VAL A 773 REMARK 465 HIS A 774 REMARK 465 PRO A 775 REMARK 465 LEU A 776 REMARK 465 PHE A 777 REMARK 465 LYS A 778 REMARK 465 ARG A 779 REMARK 465 PHE A 780 REMARK 465 ARG A 781 REMARK 465 LYS A 782 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 502 CG1 CG2 CD1 REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 LYS A 609 CG CD CE NZ REMARK 470 ARG A 678 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 857 O HOH A 867 2555 2.14 REMARK 500 OH TYR A 581 OE1 GLU A 707 4455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 623 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 537 123.83 -36.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 614 PHE A 615 138.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FZL RELATED DB: PDB REMARK 900 STRUCTURE OF C-TERMINAL DOMAIN OF ARCHAEOGLOBUS FULGIDUS XPB REMARK 900 RELATED ID: 2FWR RELATED DB: PDB REMARK 900 STRUCTURE OF ARCHAEOGLOBUS FULGIDIS XPB DBREF 4ERN A 494 782 UNP P19447 ERCC3_HUMAN 494 782 SEQRES 1 A 289 MET GLU LEU GLN ASN ASN GLY TYR ILE ALA LYS VAL GLN SEQRES 2 A 289 CYS ALA GLU VAL TRP CYS PRO MET SER PRO GLU PHE TYR SEQRES 3 A 289 ARG GLU TYR VAL ALA ILE LYS THR LYS LYS ARG ILE LEU SEQRES 4 A 289 LEU TYR THR MET ASN PRO ASN LYS PHE ARG ALA CYS GLN SEQRES 5 A 289 PHE LEU ILE LYS PHE HIS GLU ARG ARG ASN ASP LYS ILE SEQRES 6 A 289 ILE VAL PHE ALA ASP ASN VAL PHE ALA LEU LYS GLU TYR SEQRES 7 A 289 ALA ILE ARG LEU ASN LYS PRO TYR ILE TYR GLY PRO THR SEQRES 8 A 289 SER GLN GLY GLU ARG MET GLN ILE LEU GLN ASN PHE LYS SEQRES 9 A 289 HIS ASN PRO LYS ILE ASN THR ILE PHE ILE SER LYS VAL SEQRES 10 A 289 GLY ASP THR SER PHE ASP LEU PRO GLU ALA ASN VAL LEU SEQRES 11 A 289 ILE GLN ILE SER SER HIS GLY GLY SER ARG ARG GLN GLU SEQRES 12 A 289 ALA GLN ARG LEU GLY ARG VAL LEU ARG ALA LYS LYS GLY SEQRES 13 A 289 MET VAL ALA GLU GLU TYR ASN ALA PHE PHE TYR SER LEU SEQRES 14 A 289 VAL SER GLN ASP THR GLN GLU MET ALA TYR SER THR LYS SEQRES 15 A 289 ARG GLN ARG PHE LEU VAL ASP GLN GLY TYR SER PHE LYS SEQRES 16 A 289 VAL ILE THR LYS LEU ALA GLY MET GLU GLU GLU ASP LEU SEQRES 17 A 289 ALA PHE SER THR LYS GLU GLU GLN GLN GLN LEU LEU GLN SEQRES 18 A 289 LYS VAL LEU ALA ALA THR ASP LEU ASP ALA GLU GLU GLU SEQRES 19 A 289 VAL VAL ALA GLY GLU PHE GLY SER ARG SER SER GLN ALA SEQRES 20 A 289 SER ARG ARG PHE GLY THR MET SER SER MET SER GLY ALA SEQRES 21 A 289 ASP ASP THR VAL TYR MET GLU TYR HIS SER SER ARG SER SEQRES 22 A 289 LYS ALA PRO SER LYS HIS VAL HIS PRO LEU PHE LYS ARG SEQRES 23 A 289 PHE ARG LYS FORMUL 2 HOH *86(H2 O) HELIX 1 1 SER A 515 ILE A 525 1 11 HELIX 2 2 THR A 527 LYS A 529 5 3 HELIX 3 3 ARG A 530 ASN A 537 1 8 HELIX 4 4 ASN A 537 ARG A 553 1 17 HELIX 5 5 ASN A 564 LEU A 575 1 12 HELIX 6 6 SER A 585 ASN A 599 1 15 HELIX 7 7 LYS A 609 ASP A 612 5 4 HELIX 8 8 SER A 632 LEU A 644 1 13 HELIX 9 9 THR A 667 GLU A 669 5 3 HELIX 10 10 MET A 670 GLN A 683 1 14 HELIX 11 11 GLY A 695 GLU A 699 5 5 HELIX 12 12 THR A 705 ALA A 719 1 15 HELIX 13 13 THR A 720 GLU A 725 5 6 SHEET 1 A 7 TYR A 579 ILE A 580 0 SHEET 2 A 7 THR A 604 ILE A 607 1 O PHE A 606 N ILE A 580 SHEET 3 A 7 ILE A 558 PHE A 561 1 N VAL A 560 O ILE A 607 SHEET 4 A 7 VAL A 622 GLN A 625 1 O ILE A 624 N PHE A 561 SHEET 5 A 7 ALA A 657 SER A 664 1 O TYR A 660 N GLN A 625 SHEET 6 A 7 VAL A 505 CYS A 512 1 N CYS A 512 O VAL A 663 SHEET 7 A 7 SER A 686 ILE A 690 1 O ILE A 690 N GLU A 509 CISPEP 1 ASP A 612 THR A 613 0 -4.52 CISPEP 2 THR A 613 SER A 614 0 6.85 CISPEP 3 GLY A 630 GLY A 631 0 0.15 CISPEP 4 LYS A 648 GLY A 649 0 -5.01 CRYST1 38.260 73.650 84.300 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026137 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011862 0.00000