PDB Short entry for 4EUT HEADER TRANSFERASE/TRANSFERASE INHIBITOR 25-APR-12 4EUT TITLE STRUCTURE OF BX-795 COMPLEXED WITH UNPHOSPHORYLATED HUMAN TBK1 KINASE- TITLE 2 ULD DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE TBK1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE-ULD DOMAIN, UNP RESIDUES 2-385; COMPND 5 SYNONYM: NF-KAPPA-B-ACTIVATING KINASE, T2K, TANK-BINDING KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TBK1, NAK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, ATP BINDING, PHOSPHORYLATION, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.MA,E.HELGASON,Q.T.PHUNG,C.L.QUAN,R.S.IYER,M.W.LEE,K.K.BOWMAN, AUTHOR 2 M.A.STAROVASNIK,E.C.DUEBER REVDAT 4 28-FEB-24 4EUT 1 REMARK SEQADV REVDAT 3 15-NOV-17 4EUT 1 REMARK REVDAT 2 29-AUG-12 4EUT 1 JRNL REVDAT 1 23-MAY-12 4EUT 0 JRNL AUTH X.MA,E.HELGASON,Q.T.PHUNG,C.L.QUAN,R.S.IYER,M.W.LEE, JRNL AUTH 2 K.K.BOWMAN,M.A.STAROVASNIK,E.C.DUEBER JRNL TITL MOLECULAR BASIS OF TANK-BINDING KINASE 1 ACTIVATION BY JRNL TITL 2 TRANSAUTOPHOSPHORYLATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 9378 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22619329 JRNL DOI 10.1073/PNAS.1121552109 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 33838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1801 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1710 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.4090 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.4500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6102 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45000 REMARK 3 B22 (A**2) : -1.55000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.500 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6322 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8550 ; 1.116 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 759 ; 5.035 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 299 ;35.314 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1090 ;14.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;16.479 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 931 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4797 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3787 ; 0.732 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6134 ; 1.388 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2535 ; 2.048 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2416 ; 3.398 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 70.7470 7.4270 86.9890 REMARK 3 T TENSOR REMARK 3 T11: 0.1960 T22: 0.8582 REMARK 3 T33: 0.0566 T12: -0.0251 REMARK 3 T13: 0.0639 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 1.8414 L22: 0.5110 REMARK 3 L33: 2.5087 L12: -0.4693 REMARK 3 L13: -0.6382 L23: 0.0512 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: -0.2866 S13: 0.0981 REMARK 3 S21: 0.0792 S22: 0.1051 S23: -0.0564 REMARK 3 S31: -0.1552 S32: 0.1400 S33: -0.0720 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): 46.3620 15.5180 101.6820 REMARK 3 T TENSOR REMARK 3 T11: 0.2438 T22: 1.0031 REMARK 3 T33: 0.0652 T12: 0.1508 REMARK 3 T13: 0.0984 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.2477 L22: 1.8855 REMARK 3 L33: 3.5773 L12: 0.5149 REMARK 3 L13: 0.1060 L23: 1.2529 REMARK 3 S TENSOR REMARK 3 S11: 0.1332 S12: -0.0386 S13: 0.1620 REMARK 3 S21: -0.0877 S22: -0.0191 S23: 0.0469 REMARK 3 S31: -0.7096 S32: -0.5570 S33: -0.1141 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 219 REMARK 3 ORIGIN FOR THE GROUP (A): 72.8170 17.1130 56.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.7244 REMARK 3 T33: 0.0723 T12: 0.0169 REMARK 3 T13: 0.0368 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.1877 L22: 0.3271 REMARK 3 L33: 1.8558 L12: -0.0326 REMARK 3 L13: -0.1775 L23: -0.5279 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: -0.0742 S13: -0.0059 REMARK 3 S21: 0.0627 S22: -0.0043 S23: -0.0089 REMARK 3 S31: 0.0363 S32: -0.1568 S33: 0.0334 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 220 B 385 REMARK 3 ORIGIN FOR THE GROUP (A): 51.3440 14.5540 34.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.1109 T22: 0.9198 REMARK 3 T33: 0.1097 T12: -0.0398 REMARK 3 T13: 0.0252 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.6104 L22: 1.8573 REMARK 3 L33: 6.7352 L12: -0.4257 REMARK 3 L13: 1.1954 L23: 0.2174 REMARK 3 S TENSOR REMARK 3 S11: 0.1599 S12: -0.1254 S13: -0.2037 REMARK 3 S21: 0.0555 S22: 0.0314 S23: 0.1461 REMARK 3 S31: 0.2197 S32: -0.8803 S33: -0.1914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EUT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.59600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.5, 25% (W/V) PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.10700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ARG A 191 REMARK 465 LYS A 192 REMARK 465 GLY A 386 REMARK 465 ASN A 387 REMARK 465 SER A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 MET B -1 REMARK 465 LYS B 192 REMARK 465 ASP B 193 REMARK 465 HIS B 194 REMARK 465 GLN B 195 REMARK 465 LYS B 196 REMARK 465 LYS B 197 REMARK 465 TYR B 198 REMARK 465 GLY B 386 REMARK 465 ASN B 387 REMARK 465 SER B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 229 O HOH A 529 1.75 REMARK 500 O HOH B 526 O HOH B 563 1.83 REMARK 500 O ASN B 41 OG SER B 44 1.91 REMARK 500 CE1 PHE B 224 O LYS B 251 1.92 REMARK 500 NH1 ARG B 27 O GLY B 32 2.07 REMARK 500 O HOH A 513 O HOH A 550 2.10 REMARK 500 CD1 PHE B 224 O LYS B 251 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 134 -10.29 84.20 REMARK 500 ASN A 135 39.73 -142.63 REMARK 500 PHE A 158 42.54 -82.72 REMARK 500 LEU A 285 41.76 -100.26 REMARK 500 LYS A 344 -4.77 81.37 REMARK 500 ARG B 134 -8.11 80.60 REMARK 500 ASN B 135 56.06 -145.23 REMARK 500 PHE B 158 31.15 -93.86 REMARK 500 VAL B 189 -55.31 -124.02 REMARK 500 LYS B 344 30.08 72.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE 5-IODO SUBSTITUTION OF THE PYRIMIDINE IN BX-795 IS SENSITIVE TO REMARK 600 RADIATION CLEAVAGE. THE IONIZED IODINE RADICALS DIFFUSE AWAY FROM REMARK 600 ITS ORIGINAL POSITION. BOTH THE POSITIONS OF THE IODINE HAS BEEN REMARK 600 CAPTURED AND REPRESENTED AS ALTERNATE CONFORMERS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BX7 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BX7 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EUU RELATED DB: PDB DBREF 4EUT A 2 385 UNP Q9UHD2 TBK1_HUMAN 2 385 DBREF 4EUT B 2 385 UNP Q9UHD2 TBK1_HUMAN 2 385 SEQADV 4EUT MET A -1 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT GLY A 0 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT SER A 1 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT ASN A 135 UNP Q9UHD2 ASP 135 ENGINEERED MUTATION SEQADV 4EUT GLY A 386 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT ASN A 387 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT SER A 388 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS A 389 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS A 390 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS A 391 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS A 392 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS A 393 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS A 394 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT MET B -1 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT GLY B 0 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT SER B 1 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT ASN B 135 UNP Q9UHD2 ASP 135 ENGINEERED MUTATION SEQADV 4EUT GLY B 386 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT ASN B 387 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT SER B 388 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS B 389 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS B 390 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS B 391 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS B 392 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS B 393 UNP Q9UHD2 EXPRESSION TAG SEQADV 4EUT HIS B 394 UNP Q9UHD2 EXPRESSION TAG SEQRES 1 A 396 MET GLY SER GLN SER THR SER ASN HIS LEU TRP LEU LEU SEQRES 2 A 396 SER ASP ILE LEU GLY GLN GLY ALA THR ALA ASN VAL PHE SEQRES 3 A 396 ARG GLY ARG HIS LYS LYS THR GLY ASP LEU PHE ALA ILE SEQRES 4 A 396 LYS VAL PHE ASN ASN ILE SER PHE LEU ARG PRO VAL ASP SEQRES 5 A 396 VAL GLN MET ARG GLU PHE GLU VAL LEU LYS LYS LEU ASN SEQRES 6 A 396 HIS LYS ASN ILE VAL LYS LEU PHE ALA ILE GLU GLU GLU SEQRES 7 A 396 THR THR THR ARG HIS LYS VAL LEU ILE MET GLU PHE CYS SEQRES 8 A 396 PRO CYS GLY SER LEU TYR THR VAL LEU GLU GLU PRO SER SEQRES 9 A 396 ASN ALA TYR GLY LEU PRO GLU SER GLU PHE LEU ILE VAL SEQRES 10 A 396 LEU ARG ASP VAL VAL GLY GLY MET ASN HIS LEU ARG GLU SEQRES 11 A 396 ASN GLY ILE VAL HIS ARG ASN ILE LYS PRO GLY ASN ILE SEQRES 12 A 396 MET ARG VAL ILE GLY GLU ASP GLY GLN SER VAL TYR LYS SEQRES 13 A 396 LEU THR ASP PHE GLY ALA ALA ARG GLU LEU GLU ASP ASP SEQRES 14 A 396 GLU GLN PHE VAL SER LEU TYR GLY THR GLU GLU TYR LEU SEQRES 15 A 396 HIS PRO ASP MET TYR GLU ARG ALA VAL LEU ARG LYS ASP SEQRES 16 A 396 HIS GLN LYS LYS TYR GLY ALA THR VAL ASP LEU TRP SER SEQRES 17 A 396 ILE GLY VAL THR PHE TYR HIS ALA ALA THR GLY SER LEU SEQRES 18 A 396 PRO PHE ARG PRO PHE GLU GLY PRO ARG ARG ASN LYS GLU SEQRES 19 A 396 VAL MET TYR LYS ILE ILE THR GLY LYS PRO SER GLY ALA SEQRES 20 A 396 ILE SER GLY VAL GLN LYS ALA GLU ASN GLY PRO ILE ASP SEQRES 21 A 396 TRP SER GLY ASP MET PRO VAL SER CYS SER LEU SER ARG SEQRES 22 A 396 GLY LEU GLN VAL LEU LEU THR PRO VAL LEU ALA ASN ILE SEQRES 23 A 396 LEU GLU ALA ASP GLN GLU LYS CYS TRP GLY PHE ASP GLN SEQRES 24 A 396 PHE PHE ALA GLU THR SER ASP ILE LEU HIS ARG MET VAL SEQRES 25 A 396 ILE HIS VAL PHE SER LEU GLN GLN MET THR ALA HIS LYS SEQRES 26 A 396 ILE TYR ILE HIS SER TYR ASN THR ALA THR ILE PHE HIS SEQRES 27 A 396 GLU LEU VAL TYR LYS GLN THR LYS ILE ILE SER SER ASN SEQRES 28 A 396 GLN GLU LEU ILE TYR GLU GLY ARG ARG LEU VAL LEU GLU SEQRES 29 A 396 PRO GLY ARG LEU ALA GLN HIS PHE PRO LYS THR THR GLU SEQRES 30 A 396 GLU ASN PRO ILE PHE VAL VAL SER ARG GLU GLY ASN SER SEQRES 31 A 396 HIS HIS HIS HIS HIS HIS SEQRES 1 B 396 MET GLY SER GLN SER THR SER ASN HIS LEU TRP LEU LEU SEQRES 2 B 396 SER ASP ILE LEU GLY GLN GLY ALA THR ALA ASN VAL PHE SEQRES 3 B 396 ARG GLY ARG HIS LYS LYS THR GLY ASP LEU PHE ALA ILE SEQRES 4 B 396 LYS VAL PHE ASN ASN ILE SER PHE LEU ARG PRO VAL ASP SEQRES 5 B 396 VAL GLN MET ARG GLU PHE GLU VAL LEU LYS LYS LEU ASN SEQRES 6 B 396 HIS LYS ASN ILE VAL LYS LEU PHE ALA ILE GLU GLU GLU SEQRES 7 B 396 THR THR THR ARG HIS LYS VAL LEU ILE MET GLU PHE CYS SEQRES 8 B 396 PRO CYS GLY SER LEU TYR THR VAL LEU GLU GLU PRO SER SEQRES 9 B 396 ASN ALA TYR GLY LEU PRO GLU SER GLU PHE LEU ILE VAL SEQRES 10 B 396 LEU ARG ASP VAL VAL GLY GLY MET ASN HIS LEU ARG GLU SEQRES 11 B 396 ASN GLY ILE VAL HIS ARG ASN ILE LYS PRO GLY ASN ILE SEQRES 12 B 396 MET ARG VAL ILE GLY GLU ASP GLY GLN SER VAL TYR LYS SEQRES 13 B 396 LEU THR ASP PHE GLY ALA ALA ARG GLU LEU GLU ASP ASP SEQRES 14 B 396 GLU GLN PHE VAL SER LEU TYR GLY THR GLU GLU TYR LEU SEQRES 15 B 396 HIS PRO ASP MET TYR GLU ARG ALA VAL LEU ARG LYS ASP SEQRES 16 B 396 HIS GLN LYS LYS TYR GLY ALA THR VAL ASP LEU TRP SER SEQRES 17 B 396 ILE GLY VAL THR PHE TYR HIS ALA ALA THR GLY SER LEU SEQRES 18 B 396 PRO PHE ARG PRO PHE GLU GLY PRO ARG ARG ASN LYS GLU SEQRES 19 B 396 VAL MET TYR LYS ILE ILE THR GLY LYS PRO SER GLY ALA SEQRES 20 B 396 ILE SER GLY VAL GLN LYS ALA GLU ASN GLY PRO ILE ASP SEQRES 21 B 396 TRP SER GLY ASP MET PRO VAL SER CYS SER LEU SER ARG SEQRES 22 B 396 GLY LEU GLN VAL LEU LEU THR PRO VAL LEU ALA ASN ILE SEQRES 23 B 396 LEU GLU ALA ASP GLN GLU LYS CYS TRP GLY PHE ASP GLN SEQRES 24 B 396 PHE PHE ALA GLU THR SER ASP ILE LEU HIS ARG MET VAL SEQRES 25 B 396 ILE HIS VAL PHE SER LEU GLN GLN MET THR ALA HIS LYS SEQRES 26 B 396 ILE TYR ILE HIS SER TYR ASN THR ALA THR ILE PHE HIS SEQRES 27 B 396 GLU LEU VAL TYR LYS GLN THR LYS ILE ILE SER SER ASN SEQRES 28 B 396 GLN GLU LEU ILE TYR GLU GLY ARG ARG LEU VAL LEU GLU SEQRES 29 B 396 PRO GLY ARG LEU ALA GLN HIS PHE PRO LYS THR THR GLU SEQRES 30 B 396 GLU ASN PRO ILE PHE VAL VAL SER ARG GLU GLY ASN SER SEQRES 31 B 396 HIS HIS HIS HIS HIS HIS HET BX7 A 401 34 HET IOD A 402 1 HET BX7 B 401 34 HET IOD B 402 1 HET SO4 B 403 5 HET SO4 B 404 5 HETNAM BX7 N-(3-{[5-IODO-4-({3-[(THIOPHEN-2-YLCARBONYL) HETNAM 2 BX7 AMINO]PROPYL}AMINO)PYRIMIDIN-2-YL]AMINO}PHENYL) HETNAM 3 BX7 PYRROLIDINE-1-CARBOXAMIDE HETNAM IOD IODIDE ION HETNAM SO4 SULFATE ION FORMUL 3 BX7 2(C23 H26 I N7 O2 S) FORMUL 4 IOD 2(I 1-) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *132(H2 O) HELIX 1 1 ASN A 42 ARG A 47 5 6 HELIX 2 2 PRO A 48 LEU A 62 1 15 HELIX 3 3 LEU A 94 LEU A 98 1 5 HELIX 4 4 GLU A 99 ALA A 104 5 6 HELIX 5 5 PRO A 108 ASN A 129 1 22 HELIX 6 6 LYS A 137 GLY A 139 5 3 HELIX 7 7 ASP A 166 PHE A 170 5 5 HELIX 8 8 HIS A 181 VAL A 189 1 9 HELIX 9 9 HIS A 194 GLY A 217 1 24 HELIX 10 10 ASN A 230 GLY A 240 1 11 HELIX 11 11 SER A 270 LEU A 285 1 16 HELIX 12 12 GLY A 294 HIS A 307 1 14 HELIX 13 13 THR A 331 LYS A 344 1 14 HELIX 14 14 ASN B 42 ARG B 47 5 6 HELIX 15 15 PRO B 48 LEU B 62 1 15 HELIX 16 16 SER B 93 GLU B 100 1 8 HELIX 17 17 PRO B 101 ALA B 104 5 4 HELIX 18 18 PRO B 108 ASN B 129 1 22 HELIX 19 19 LYS B 137 GLY B 139 5 3 HELIX 20 20 ASP B 167 SER B 172 1 6 HELIX 21 21 HIS B 181 VAL B 189 1 9 HELIX 22 22 ALA B 200 GLY B 217 1 18 HELIX 23 23 ASN B 230 GLY B 240 1 11 HELIX 24 24 SER B 270 LEU B 285 1 16 HELIX 25 25 GLY B 294 HIS B 307 1 14 HELIX 26 26 THR B 331 LYS B 344 1 14 HELIX 27 27 ILE B 346 SER B 348 5 3 HELIX 28 28 LEU B 366 PHE B 370 5 5 SHEET 1 A 6 SER A 1 SER A 3 0 SHEET 2 A 6 HIS A 7 GLN A 17 -1 O TRP A 9 N GLN A 2 SHEET 3 A 6 ALA A 21 HIS A 28 -1 O VAL A 23 N LEU A 15 SHEET 4 A 6 LEU A 34 PHE A 40 -1 O VAL A 39 N ASN A 22 SHEET 5 A 6 LYS A 82 MET A 86 -1 O MET A 86 N ALA A 36 SHEET 6 A 6 LEU A 70 GLU A 75 -1 N GLU A 74 O VAL A 83 SHEET 1 B 3 GLY A 92 SER A 93 0 SHEET 2 B 3 ILE A 141 ILE A 145 -1 O ARG A 143 N GLY A 92 SHEET 3 B 3 SER A 151 LEU A 155 -1 O LYS A 154 N MET A 142 SHEET 1 C 2 ILE A 131 VAL A 132 0 SHEET 2 C 2 ARG A 162 GLU A 163 -1 O ARG A 162 N VAL A 132 SHEET 1 D 3 PHE A 221 ARG A 222 0 SHEET 2 D 3 SER A 247 GLN A 250 1 O GLN A 250 N ARG A 222 SHEET 3 D 3 ILE A 257 SER A 260 -1 O ASP A 258 N VAL A 249 SHEET 1 E 5 THR A 320 ILE A 326 0 SHEET 2 E 5 MET A 309 SER A 315 -1 N MET A 309 O ILE A 326 SHEET 3 E 5 ILE A 379 SER A 383 1 O VAL A 381 N PHE A 314 SHEET 4 E 5 GLN A 350 ILE A 353 -1 N ILE A 353 O PHE A 380 SHEET 5 E 5 ARG A 358 LEU A 359 -1 O LEU A 359 N LEU A 352 SHEET 1 F 6 SER B 1 SER B 3 0 SHEET 2 F 6 HIS B 7 GLN B 17 -1 O TRP B 9 N GLN B 2 SHEET 3 F 6 ALA B 21 HIS B 28 -1 O VAL B 23 N LEU B 15 SHEET 4 F 6 LEU B 34 PHE B 40 -1 O ILE B 37 N PHE B 24 SHEET 5 F 6 LYS B 82 GLU B 87 -1 O MET B 86 N ALA B 36 SHEET 6 F 6 LEU B 70 GLU B 75 -1 N ALA B 72 O ILE B 85 SHEET 1 G 2 ILE B 131 VAL B 132 0 SHEET 2 G 2 ARG B 162 GLU B 163 -1 O ARG B 162 N VAL B 132 SHEET 1 H 2 ILE B 141 ILE B 145 0 SHEET 2 H 2 SER B 151 LEU B 155 -1 O LYS B 154 N MET B 142 SHEET 1 I 3 PHE B 221 ARG B 222 0 SHEET 2 I 3 SER B 247 GLN B 250 1 O GLN B 250 N ARG B 222 SHEET 3 I 3 ILE B 257 SER B 260 -1 O ASP B 258 N VAL B 249 SHEET 1 J 5 THR B 320 ILE B 326 0 SHEET 2 J 5 MET B 309 SER B 315 -1 N MET B 309 O ILE B 326 SHEET 3 J 5 ILE B 379 SER B 383 1 O ILE B 379 N HIS B 312 SHEET 4 J 5 GLN B 350 TYR B 354 -1 N GLU B 351 O VAL B 382 SHEET 5 J 5 ARG B 357 LEU B 359 -1 O ARG B 357 N TYR B 354 SITE 1 AC1 15 LEU A 15 GLN A 17 GLY A 18 VAL A 23 SITE 2 AC1 15 ALA A 36 MET A 86 GLU A 87 CYS A 89 SITE 3 AC1 15 PRO A 90 GLY A 92 GLY A 139 MET A 142 SITE 4 AC1 15 THR A 156 ASP A 157 IOD A 402 SITE 1 AC2 3 THR A 156 ASP A 157 BX7 A 401 SITE 1 AC3 19 LEU B 15 GLN B 17 GLY B 18 ALA B 21 SITE 2 AC3 19 VAL B 23 ALA B 36 LYS B 38 MET B 86 SITE 3 AC3 19 GLU B 87 CYS B 89 PRO B 90 CYS B 91 SITE 4 AC3 19 GLY B 92 THR B 96 GLY B 139 MET B 142 SITE 5 AC3 19 THR B 156 IOD B 402 HOH B 511 SITE 1 AC4 4 LYS B 38 THR B 156 ASP B 157 BX7 B 401 SITE 1 AC5 5 ARG A 54 ARG A 134 ARG A 162 ARG B 162 SITE 2 AC5 5 ARG B 187 SITE 1 AC6 6 ARG A 162 ARG A 187 GLN A 195 ARG B 54 SITE 2 AC6 6 ARG B 134 ARG B 162 CRYST1 89.915 60.214 116.716 90.00 94.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011122 0.000000 0.000788 0.00000 SCALE2 0.000000 0.016607 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008589 0.00000