PDB Short entry for 4EZV HEADER CHAPERONE/PEPTIDE BINDING PROTEIN 03-MAY-12 4EZV TITLE CRYSTAL STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF E.COLI DNAK IN TITLE 2 COMPLEX WITH PR-BOMBESIN IN SPACE GROUP P21212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 389-607; COMPND 5 SYNONYM: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROLINE RICH BOMBESIN-RELATED PROTEIN; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 46-60; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B0014, DNAK, GROP, GRPF, JW0013, SEG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: BOMBINA MAXIMA; SOURCE 11 ORGANISM_COMMON: CHINESE RED BELLY TOAD; SOURCE 12 ORGANISM_TAXID: 161274; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN BOMBINA MAXIMA. C- SOURCE 14 TERMINUS IS AMIDATED. KEYWDS CHAPERONE, PEPTIDE BINDING, CHAPERONE-PEPTIDE BINDING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,N.STRAETER REVDAT 2 15-NOV-17 4EZV 1 REMARK REVDAT 1 24-APR-13 4EZV 0 JRNL AUTH M.ZAHN,N.STRAETER JRNL TITL STRUCTURAL STUDIES OF DNAK IN COMPLEX WITH PROLINE RICH JRNL TITL 2 ANTIMICROBIAL PEPTIDES REVEAL TWO DIFFERENT PEPTIDE BINDING JRNL TITL 3 MODES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2379 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3491 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : -1.29000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.197 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3604 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4876 ; 1.962 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 5.824 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;41.652 ;26.386 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 686 ;16.448 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;23.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 566 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2682 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 389 A 421 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9719 7.3063 -13.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.1314 T22: 0.1332 REMARK 3 T33: 0.0805 T12: -0.0197 REMARK 3 T13: -0.0382 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 0.6830 L22: 6.0936 REMARK 3 L33: 1.3515 L12: 1.0438 REMARK 3 L13: 0.1111 L23: 2.3284 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: 0.1013 S13: -0.0935 REMARK 3 S21: 0.1838 S22: 0.2155 S23: -0.2527 REMARK 3 S31: 0.1516 S32: 0.0613 S33: -0.1625 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 422 A 484 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7881 20.0334 -9.2197 REMARK 3 T TENSOR REMARK 3 T11: 0.0829 T22: 0.0921 REMARK 3 T33: 0.0741 T12: 0.0009 REMARK 3 T13: -0.0412 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 2.2979 L22: 4.2504 REMARK 3 L33: 1.5121 L12: 0.7798 REMARK 3 L13: -0.5286 L23: 0.1083 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.0594 S13: -0.0373 REMARK 3 S21: 0.2667 S22: 0.1952 S23: -0.3246 REMARK 3 S31: -0.0861 S32: 0.0962 S33: -0.1726 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 485 A 517 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2491 10.2620 -8.2964 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.0776 REMARK 3 T33: 0.1203 T12: 0.0545 REMARK 3 T13: -0.0586 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 2.4062 L22: 7.3389 REMARK 3 L33: 3.2358 L12: 2.4666 REMARK 3 L13: -1.4544 L23: -1.1566 REMARK 3 S TENSOR REMARK 3 S11: -0.2406 S12: 0.0264 S13: -0.2837 REMARK 3 S21: -0.0768 S22: 0.3236 S23: -0.6579 REMARK 3 S31: 0.5144 S32: 0.3449 S33: -0.0830 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 518 A 558 REMARK 3 ORIGIN FOR THE GROUP (A): -27.5230 31.9771 -5.3466 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.0877 REMARK 3 T33: 0.1010 T12: 0.0156 REMARK 3 T13: 0.0702 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.1874 L22: 17.9406 REMARK 3 L33: 1.6506 L12: 0.0076 REMARK 3 L13: -0.3317 L23: -2.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: -0.0154 S13: 0.0248 REMARK 3 S21: 0.1239 S22: 0.0364 S23: 0.1459 REMARK 3 S31: -0.1592 S32: -0.0046 S33: -0.1217 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 559 A 607 REMARK 3 ORIGIN FOR THE GROUP (A): -32.0598 43.1845 -5.2423 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.0940 REMARK 3 T33: 0.1036 T12: 0.0632 REMARK 3 T13: 0.0790 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 2.5807 L22: 3.9580 REMARK 3 L33: 2.8782 L12: 0.4237 REMARK 3 L13: -0.8071 L23: -0.7288 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: -0.1292 S13: 0.2011 REMARK 3 S21: 0.0934 S22: -0.0945 S23: 0.0220 REMARK 3 S31: -0.3009 S32: -0.0403 S33: -0.0115 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 389 B 394 REMARK 3 ORIGIN FOR THE GROUP (A): -51.1791 2.7421 -11.0377 REMARK 3 T TENSOR REMARK 3 T11: 0.6173 T22: 0.4259 REMARK 3 T33: 0.5975 T12: -0.0116 REMARK 3 T13: 0.1214 T23: 0.1859 REMARK 3 L TENSOR REMARK 3 L11: 7.7684 L22: 32.5917 REMARK 3 L33: 16.1721 L12: 15.9065 REMARK 3 L13: -11.2043 L23: -22.9513 REMARK 3 S TENSOR REMARK 3 S11: -0.4112 S12: 0.3933 S13: 0.5774 REMARK 3 S21: -1.2067 S22: 1.0317 S23: 1.1850 REMARK 3 S31: 0.8704 S32: -0.5761 S33: -0.6205 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 395 B 512 REMARK 3 ORIGIN FOR THE GROUP (A): -41.5240 24.1659 -20.3260 REMARK 3 T TENSOR REMARK 3 T11: 0.0417 T22: 0.1079 REMARK 3 T33: 0.0849 T12: 0.0465 REMARK 3 T13: 0.0057 T23: 0.0692 REMARK 3 L TENSOR REMARK 3 L11: 0.7997 L22: 3.4730 REMARK 3 L33: 1.4722 L12: 0.3623 REMARK 3 L13: 0.0066 L23: 1.0862 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.0293 S13: 0.0659 REMARK 3 S21: 0.0392 S22: 0.1381 S23: 0.2349 REMARK 3 S31: -0.0063 S32: -0.1288 S33: -0.0675 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 513 B 552 REMARK 3 ORIGIN FOR THE GROUP (A): -24.1975 23.6903 -25.3305 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.1267 REMARK 3 T33: 0.1463 T12: 0.0107 REMARK 3 T13: 0.0073 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 3.8758 L22: 10.4191 REMARK 3 L33: 1.0631 L12: 6.3246 REMARK 3 L13: 0.6220 L23: 0.9863 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: -0.0738 S13: -0.0915 REMARK 3 S21: 0.0790 S22: -0.1568 S23: -0.1262 REMARK 3 S31: -0.0048 S32: 0.0430 S33: 0.0490 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 553 B 594 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7194 37.1378 -28.0710 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.1282 REMARK 3 T33: 0.1191 T12: -0.0333 REMARK 3 T13: 0.0594 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 2.6133 L22: 5.5757 REMARK 3 L33: 3.4124 L12: 1.5385 REMARK 3 L13: -0.7015 L23: 0.0804 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.1049 S13: 0.0013 REMARK 3 S21: -0.1772 S22: 0.1231 S23: -0.3104 REMARK 3 S31: -0.1802 S32: 0.0482 S33: -0.1375 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 595 B 604 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5706 44.0596 -15.2834 REMARK 3 T TENSOR REMARK 3 T11: 0.4121 T22: 0.5135 REMARK 3 T33: 0.2201 T12: -0.0893 REMARK 3 T13: -0.0910 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 3.5897 L22: 20.0896 REMARK 3 L33: 16.7810 L12: 3.7206 REMARK 3 L13: 0.4699 L23: 9.9063 REMARK 3 S TENSOR REMARK 3 S11: 0.3154 S12: -0.9977 S13: -0.0659 REMARK 3 S21: 1.8182 S22: 0.0232 S23: -1.2785 REMARK 3 S31: 0.5892 S32: 0.4182 S33: -0.3386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4EZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000072277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI - 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37117 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8 M AMMONIUM SULFATE, 0.1 M HEPES PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.56700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.37800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.56700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.37800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -65.13400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -65.13400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 605 REMARK 465 HIS B 606 REMARK 465 ALA B 607 REMARK 465 GLU C 1 REMARK 465 LYS C 2 REMARK 465 LYS C 3 REMARK 465 PRO C 4 REMARK 465 GLU D 1 REMARK 465 LYS D 2 REMARK 465 LYS D 3 REMARK 465 PRO D 4 REMARK 465 PRO D 5 REMARK 465 ARG D 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET C 17 CA C O CB CG SD CE REMARK 470 MET D 17 CA C O CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 439 CG HIS A 439 CD2 0.066 REMARK 500 HIS A 485 CG HIS A 485 CD2 0.060 REMARK 500 HIS B 422 CG HIS B 422 CD2 0.064 REMARK 500 HIS B 485 CG HIS B 485 CD2 0.067 REMARK 500 HIS C 14 CG HIS C 14 CD2 0.062 REMARK 500 HIS C 14 CG HIS C 14 CD2 0.064 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 8 C - N - CA ANGL. DEV. = -9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 404 124.11 -33.90 REMARK 500 MET B 404 124.61 -39.75 REMARK 500 ASP B 460 -164.94 -109.82 REMARK 500 ARG B 467 128.12 -34.75 REMARK 500 ASN B 492 -89.11 -68.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 4EZV A 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4EZV B 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4EZV C 2 16 UNP Q8QFP2 Q8QFP2_BOMMX 46 60 DBREF 4EZV D 2 16 UNP Q8QFP2 Q8QFP2_BOMMX 46 60 SEQADV 4EZV GLU C 1 UNP Q8QFP2 EXPRESSION TAG SEQADV 4EZV MET C 17 UNP Q8QFP2 EXPRESSION TAG SEQADV 4EZV GLU D 1 UNP Q8QFP2 EXPRESSION TAG SEQADV 4EZV MET D 17 UNP Q8QFP2 EXPRESSION TAG SEQRES 1 A 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 A 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 A 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 A 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 A 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 A 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 A 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 A 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 A 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 A 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 A 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 A 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 A 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 A 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 A 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 A 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 A 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 B 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 B 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 B 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 B 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 B 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 B 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 B 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 B 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 B 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 B 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 B 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 B 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 B 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 B 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 B 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 B 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 B 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 C 17 GLU LYS LYS PRO PRO ARG PRO PRO GLN TRP ALA VAL GLY SEQRES 2 C 17 HIS PHE MET MET SEQRES 1 D 17 GLU LYS LYS PRO PRO ARG PRO PRO GLN TRP ALA VAL GLY SEQRES 2 D 17 HIS PHE MET MET FORMUL 5 HOH *146(H2 O) HELIX 1 1 ARG A 447 ASN A 451 5 5 HELIX 2 2 ASN A 508 ASN A 522 1 15 HELIX 3 3 ASN A 522 GLY A 554 1 33 HELIX 4 4 ASP A 555 LEU A 557 5 3 HELIX 5 5 PRO A 558 LYS A 577 1 20 HELIX 6 6 ASP A 580 VAL A 594 1 15 HELIX 7 7 SER A 595 ALA A 607 1 13 HELIX 8 8 ARG B 447 ASN B 451 5 5 HELIX 9 9 ASN B 508 ASN B 522 1 15 HELIX 10 10 ASN B 522 GLY B 554 1 33 HELIX 11 11 ASP B 555 LEU B 557 5 3 HELIX 12 12 PRO B 558 GLY B 578 1 21 HELIX 13 13 ASP B 580 SER B 595 1 16 HELIX 14 14 SER B 595 GLN B 604 1 10 SHEET 1 A 4 VAL A 407 ILE A 412 0 SHEET 2 A 4 LEU A 399 THR A 403 -1 N LEU A 399 O LEU A 411 SHEET 3 A 4 ALA A 435 GLN A 442 -1 O LEU A 441 N GLY A 400 SHEET 4 A 4 LYS A 452 ASP A 460 -1 O LEU A 454 N VAL A 440 SHEET 1 B 5 GLU A 496 ILE A 501 0 SHEET 2 B 5 LEU A 484 ASP A 490 -1 N LEU A 484 O ILE A 501 SHEET 3 B 5 ILE A 472 ILE A 478 -1 N ASP A 477 O HIS A 485 SHEET 4 B 5 THR A 420 THR A 428 -1 N PHE A 426 O ILE A 472 SHEET 5 B 5 VAL C 12 HIS C 14 -1 O GLY C 13 N SER A 427 SHEET 1 C 4 VAL B 407 ILE B 412 0 SHEET 2 C 4 LEU B 399 THR B 403 -1 N ILE B 401 O THR B 409 SHEET 3 C 4 VAL B 436 GLN B 442 -1 O LEU B 441 N GLY B 400 SHEET 4 C 4 LYS B 452 LEU B 459 -1 O LEU B 454 N VAL B 440 SHEET 1 D 5 GLU B 496 ILE B 501 0 SHEET 2 D 5 LEU B 484 ASP B 490 -1 N LEU B 484 O ILE B 501 SHEET 3 D 5 ILE B 472 ILE B 478 -1 N GLU B 473 O LYS B 489 SHEET 4 D 5 THR B 420 THR B 428 -1 N HIS B 422 O PHE B 476 SHEET 5 D 5 VAL D 12 HIS D 14 -1 O GLY D 13 N SER B 427 CISPEP 1 ILE A 418 PRO A 419 0 0.55 CISPEP 2 ILE B 418 PRO B 419 0 7.65 CRYST1 65.134 148.756 64.010 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015353 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006722 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015623 0.00000