PDB Short entry for 4F5D HEADER IMMUNE SYSTEM 13-MAY-12 4F5D TITLE ERIS/STING IN COMPLEX WITH LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN 173; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 141-379; COMPND 5 SYNONYM: ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR COMPND 6 OF IRF3 ACTIVATION, HMITA, STIMULATOR OF INTERFERON GENES PROTEIN, COMPND 7 HSTING; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TMEM173, ERIS, MITA, STING; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.HUANG,X.Y.LIU,X.D.SU REVDAT 4 20-MAR-24 4F5D 1 REMARK SEQADV HETSYN LINK REVDAT 3 15-NOV-17 4F5D 1 REMARK REVDAT 2 14-NOV-12 4F5D 1 JRNL REVDAT 1 27-JUN-12 4F5D 0 JRNL AUTH Y.H.HUANG,X.Y.LIU,X.X.DU,Z.F.JIANG,X.D.SU JRNL TITL THE STRUCTURAL BASIS FOR THE SENSING AND BINDING OF CYCLIC JRNL TITL 2 DI-GMP BY STING JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 728 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22728659 JRNL DOI 10.1038/NSMB.2333 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 8883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.110 REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7729 - 5.4204 0.99 1403 158 0.2053 0.2104 REMARK 3 2 5.4204 - 4.3170 1.00 1337 152 0.1725 0.1797 REMARK 3 3 4.3170 - 3.7756 0.97 1292 150 0.2008 0.2454 REMARK 3 4 3.7756 - 3.4324 0.98 1317 146 0.2452 0.3284 REMARK 3 5 3.4324 - 3.1875 1.00 1310 147 0.2308 0.2929 REMARK 3 6 3.1875 - 3.0002 0.99 1326 145 0.2682 0.2931 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 34.91 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19590 REMARK 3 B22 (A**2) : -0.19590 REMARK 3 B33 (A**2) : 0.39170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3152 REMARK 3 ANGLE : 1.011 4282 REMARK 3 CHIRALITY : 0.066 464 REMARK 3 PLANARITY : 0.002 562 REMARK 3 DIHEDRAL : 16.106 1238 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 35.6760 -20.2532 3.1212 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.0649 REMARK 3 T33: 0.0828 T12: -0.0011 REMARK 3 T13: 0.0535 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 1.2395 L22: 1.0222 REMARK 3 L33: 0.5510 L12: -0.8728 REMARK 3 L13: 0.2831 L23: -0.4050 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: -0.1542 S13: 0.1502 REMARK 3 S21: -0.1637 S22: -0.0036 S23: -0.1633 REMARK 3 S31: 0.0089 S32: -0.0181 S33: 0.0294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 153:339 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 153:339 ) REMARK 3 ATOM PAIRS NUMBER : 1512 REMARK 3 RMSD : 0.529 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8899 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.025M MGSO4, 0.05M TRIS-HCL PH 8.5, REMARK 280 1.8M AMSO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.51000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 8.75500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 124 REMARK 465 SER A 125 REMARK 465 HIS A 126 REMARK 465 MET A 127 REMARK 465 ALA A 128 REMARK 465 SER A 129 REMARK 465 MET A 130 REMARK 465 THR A 131 REMARK 465 GLY A 132 REMARK 465 GLY A 133 REMARK 465 MET A 134 REMARK 465 GLY A 135 REMARK 465 ARG A 136 REMARK 465 GLY A 137 REMARK 465 SER A 138 REMARK 465 MET A 139 REMARK 465 MET A 140 REMARK 465 PRO A 141 REMARK 465 ALA A 142 REMARK 465 GLU A 143 REMARK 465 ILE A 144 REMARK 465 SER A 145 REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 CYS A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 GLY A 151 REMARK 465 ASN A 152 REMARK 465 VAL A 341 REMARK 465 THR A 342 REMARK 465 VAL A 343 REMARK 465 GLY A 344 REMARK 465 SER A 345 REMARK 465 LEU A 346 REMARK 465 LYS A 347 REMARK 465 THR A 348 REMARK 465 SER A 349 REMARK 465 ALA A 350 REMARK 465 VAL A 351 REMARK 465 PRO A 352 REMARK 465 SER A 353 REMARK 465 THR A 354 REMARK 465 SER A 355 REMARK 465 THR A 356 REMARK 465 MET A 357 REMARK 465 SER A 358 REMARK 465 GLN A 359 REMARK 465 GLU A 360 REMARK 465 PRO A 361 REMARK 465 GLU A 362 REMARK 465 LEU A 363 REMARK 465 LEU A 364 REMARK 465 ILE A 365 REMARK 465 SER A 366 REMARK 465 GLY A 367 REMARK 465 MET A 368 REMARK 465 GLU A 369 REMARK 465 LYS A 370 REMARK 465 PRO A 371 REMARK 465 LEU A 372 REMARK 465 PRO A 373 REMARK 465 LEU A 374 REMARK 465 ARG A 375 REMARK 465 THR A 376 REMARK 465 ASP A 377 REMARK 465 PHE A 378 REMARK 465 SER A 379 REMARK 465 GLY B 124 REMARK 465 SER B 125 REMARK 465 HIS B 126 REMARK 465 MET B 127 REMARK 465 ALA B 128 REMARK 465 SER B 129 REMARK 465 MET B 130 REMARK 465 THR B 131 REMARK 465 GLY B 132 REMARK 465 GLY B 133 REMARK 465 MET B 134 REMARK 465 GLY B 135 REMARK 465 ARG B 136 REMARK 465 GLY B 137 REMARK 465 SER B 138 REMARK 465 MET B 139 REMARK 465 MET B 140 REMARK 465 PRO B 141 REMARK 465 ALA B 142 REMARK 465 GLU B 143 REMARK 465 ILE B 144 REMARK 465 SER B 145 REMARK 465 ALA B 146 REMARK 465 VAL B 147 REMARK 465 CYS B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 465 GLY B 151 REMARK 465 ASN B 152 REMARK 465 VAL B 341 REMARK 465 THR B 342 REMARK 465 VAL B 343 REMARK 465 GLY B 344 REMARK 465 SER B 345 REMARK 465 LEU B 346 REMARK 465 LYS B 347 REMARK 465 THR B 348 REMARK 465 SER B 349 REMARK 465 ALA B 350 REMARK 465 VAL B 351 REMARK 465 PRO B 352 REMARK 465 SER B 353 REMARK 465 THR B 354 REMARK 465 SER B 355 REMARK 465 THR B 356 REMARK 465 MET B 357 REMARK 465 SER B 358 REMARK 465 GLN B 359 REMARK 465 GLU B 360 REMARK 465 PRO B 361 REMARK 465 GLU B 362 REMARK 465 LEU B 363 REMARK 465 LEU B 364 REMARK 465 ILE B 365 REMARK 465 SER B 366 REMARK 465 GLY B 367 REMARK 465 MET B 368 REMARK 465 GLU B 369 REMARK 465 LYS B 370 REMARK 465 PRO B 371 REMARK 465 LEU B 372 REMARK 465 PRO B 373 REMARK 465 LEU B 374 REMARK 465 ARG B 375 REMARK 465 THR B 376 REMARK 465 ASP B 377 REMARK 465 PHE B 378 REMARK 465 SER B 379 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 192 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 GLY B 192 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 167 -69.39 -137.30 REMARK 500 ASN A 187 -71.77 -137.99 REMARK 500 LEU A 190 -136.91 58.63 REMARK 500 LEU A 202 79.15 -115.57 REMARK 500 LEU A 222 -69.21 -98.07 REMARK 500 PRO A 226 133.39 -36.04 REMARK 500 ALA A 233 141.35 -39.97 REMARK 500 ALA A 277 -39.46 -35.87 REMARK 500 ARG A 293 -74.13 -52.62 REMARK 500 SER A 322 40.44 -85.83 REMARK 500 TYR B 167 -69.67 -135.90 REMARK 500 ASN B 187 -135.84 -101.27 REMARK 500 LEU B 190 -130.21 57.74 REMARK 500 LEU B 202 79.14 -115.58 REMARK 500 LEU B 222 -69.21 -98.08 REMARK 500 PRO B 226 133.40 -35.91 REMARK 500 ARG B 293 -73.99 -53.17 REMARK 500 SER B 322 40.11 -85.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 277 GLY A 278 -46.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 166 O REMARK 620 2 TYR A 240 OH 87.1 REMARK 620 3 C2E A 401 O2P 90.1 125.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F5E RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 H232R IS BASED ON REF2 OF DATABASE Q86WV6 (TM173_HUMAN). IT REMARK 999 CORRESPONDS TO VARIANT RS1131769. DBREF 4F5D A 141 379 UNP Q86WV6 TM173_HUMAN 141 379 DBREF 4F5D B 141 379 UNP Q86WV6 TM173_HUMAN 141 379 SEQADV 4F5D GLY A 124 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D SER A 125 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D HIS A 126 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET A 127 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D ALA A 128 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D SER A 129 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET A 130 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D THR A 131 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D GLY A 132 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D GLY A 133 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET A 134 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D GLY A 135 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D ARG A 136 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D GLY A 137 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D SER A 138 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET A 139 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET A 140 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D ALA A 230 UNP Q86WV6 GLY 230 ENGINEERED MUTATION SEQADV 4F5D ARG A 232 UNP Q86WV6 HIS 232 SEE REMARK 999 SEQADV 4F5D GLY B 124 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D SER B 125 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D HIS B 126 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET B 127 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D ALA B 128 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D SER B 129 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET B 130 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D THR B 131 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D GLY B 132 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D GLY B 133 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET B 134 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D GLY B 135 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D ARG B 136 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D GLY B 137 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D SER B 138 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET B 139 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D MET B 140 UNP Q86WV6 EXPRESSION TAG SEQADV 4F5D ALA B 230 UNP Q86WV6 GLY 230 ENGINEERED MUTATION SEQADV 4F5D ARG B 232 UNP Q86WV6 HIS 232 SEE REMARK 999 SEQRES 1 A 256 GLY SER HIS MET ALA SER MET THR GLY GLY MET GLY ARG SEQRES 2 A 256 GLY SER MET MET PRO ALA GLU ILE SER ALA VAL CYS GLU SEQRES 3 A 256 LYS GLY ASN PHE ASN VAL ALA HIS GLY LEU ALA TRP SER SEQRES 4 A 256 TYR TYR ILE GLY TYR LEU ARG LEU ILE LEU PRO GLU LEU SEQRES 5 A 256 GLN ALA ARG ILE ARG THR TYR ASN GLN HIS TYR ASN ASN SEQRES 6 A 256 LEU LEU ARG GLY ALA VAL SER GLN ARG LEU TYR ILE LEU SEQRES 7 A 256 LEU PRO LEU ASP CYS GLY VAL PRO ASP ASN LEU SER MET SEQRES 8 A 256 ALA ASP PRO ASN ILE ARG PHE LEU ASP LYS LEU PRO GLN SEQRES 9 A 256 GLN THR ALA ASP ARG ALA GLY ILE LYS ASP ARG VAL TYR SEQRES 10 A 256 SER ASN SER ILE TYR GLU LEU LEU GLU ASN GLY GLN ARG SEQRES 11 A 256 ALA GLY THR CYS VAL LEU GLU TYR ALA THR PRO LEU GLN SEQRES 12 A 256 THR LEU PHE ALA MET SER GLN TYR SER GLN ALA GLY PHE SEQRES 13 A 256 SER ARG GLU ASP ARG LEU GLU GLN ALA LYS LEU PHE CYS SEQRES 14 A 256 ARG THR LEU GLU ASP ILE LEU ALA ASP ALA PRO GLU SER SEQRES 15 A 256 GLN ASN ASN CYS ARG LEU ILE ALA TYR GLN GLU PRO ALA SEQRES 16 A 256 ASP ASP SER SER PHE SER LEU SER GLN GLU VAL LEU ARG SEQRES 17 A 256 HIS LEU ARG GLN GLU GLU LYS GLU GLU VAL THR VAL GLY SEQRES 18 A 256 SER LEU LYS THR SER ALA VAL PRO SER THR SER THR MET SEQRES 19 A 256 SER GLN GLU PRO GLU LEU LEU ILE SER GLY MET GLU LYS SEQRES 20 A 256 PRO LEU PRO LEU ARG THR ASP PHE SER SEQRES 1 B 256 GLY SER HIS MET ALA SER MET THR GLY GLY MET GLY ARG SEQRES 2 B 256 GLY SER MET MET PRO ALA GLU ILE SER ALA VAL CYS GLU SEQRES 3 B 256 LYS GLY ASN PHE ASN VAL ALA HIS GLY LEU ALA TRP SER SEQRES 4 B 256 TYR TYR ILE GLY TYR LEU ARG LEU ILE LEU PRO GLU LEU SEQRES 5 B 256 GLN ALA ARG ILE ARG THR TYR ASN GLN HIS TYR ASN ASN SEQRES 6 B 256 LEU LEU ARG GLY ALA VAL SER GLN ARG LEU TYR ILE LEU SEQRES 7 B 256 LEU PRO LEU ASP CYS GLY VAL PRO ASP ASN LEU SER MET SEQRES 8 B 256 ALA ASP PRO ASN ILE ARG PHE LEU ASP LYS LEU PRO GLN SEQRES 9 B 256 GLN THR ALA ASP ARG ALA GLY ILE LYS ASP ARG VAL TYR SEQRES 10 B 256 SER ASN SER ILE TYR GLU LEU LEU GLU ASN GLY GLN ARG SEQRES 11 B 256 ALA GLY THR CYS VAL LEU GLU TYR ALA THR PRO LEU GLN SEQRES 12 B 256 THR LEU PHE ALA MET SER GLN TYR SER GLN ALA GLY PHE SEQRES 13 B 256 SER ARG GLU ASP ARG LEU GLU GLN ALA LYS LEU PHE CYS SEQRES 14 B 256 ARG THR LEU GLU ASP ILE LEU ALA ASP ALA PRO GLU SER SEQRES 15 B 256 GLN ASN ASN CYS ARG LEU ILE ALA TYR GLN GLU PRO ALA SEQRES 16 B 256 ASP ASP SER SER PHE SER LEU SER GLN GLU VAL LEU ARG SEQRES 17 B 256 HIS LEU ARG GLN GLU GLU LYS GLU GLU VAL THR VAL GLY SEQRES 18 B 256 SER LEU LYS THR SER ALA VAL PRO SER THR SER THR MET SEQRES 19 B 256 SER GLN GLU PRO GLU LEU LEU ILE SER GLY MET GLU LYS SEQRES 20 B 256 PRO LEU PRO LEU ARG THR ASP PHE SER HET C2E A 401 46 HET MG A 402 1 HET MG B 401 1 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM MG MAGNESIUM ION HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E C20 H24 N10 O14 P2 FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *2(H2 O) HELIX 1 1 VAL A 155 TYR A 167 1 13 HELIX 2 2 TYR A 167 ASN A 187 1 21 HELIX 3 3 ASN A 211 ASP A 216 1 6 HELIX 4 4 ALA A 262 SER A 272 1 11 HELIX 5 5 SER A 280 GLU A 282 5 3 HELIX 6 6 ASP A 283 ASP A 301 1 19 HELIX 7 7 SER A 324 GLU A 340 1 17 HELIX 8 8 VAL B 155 TYR B 167 1 13 HELIX 9 9 TYR B 167 ASN B 187 1 21 HELIX 10 10 ASN B 211 ASP B 216 1 6 HELIX 11 11 ALA B 262 SER B 272 1 11 HELIX 12 12 SER B 280 GLU B 282 5 3 HELIX 13 13 ASP B 283 ASP B 301 1 19 HELIX 14 14 SER B 324 LYS B 338 1 15 SHEET 1 A 5 ILE A 219 ALA A 230 0 SHEET 2 A 5 ARG A 238 GLU A 249 -1 O ILE A 244 N LEU A 222 SHEET 3 A 5 GLN A 252 TYR A 261 -1 O GLN A 252 N GLU A 249 SHEET 4 A 5 VAL A 194 PRO A 203 1 N LEU A 201 O GLU A 260 SHEET 5 A 5 CYS A 309 TYR A 314 1 O ILE A 312 N LEU A 202 SHEET 1 B 5 ILE B 219 ALA B 230 0 SHEET 2 B 5 ARG B 238 GLU B 249 -1 O ILE B 244 N LEU B 222 SHEET 3 B 5 GLN B 252 TYR B 261 -1 O GLN B 252 N GLU B 249 SHEET 4 B 5 VAL B 194 PRO B 203 1 N LEU B 201 O GLU B 260 SHEET 5 B 5 CYS B 309 TYR B 314 1 O ILE B 312 N LEU B 202 LINK O GLY A 166 MG MG A 402 1555 1555 2.93 LINK OH TYR A 240 MG MG A 402 1555 1555 2.89 LINK O2P C2E A 401 MG MG A 402 1555 1555 2.94 LINK O21 C2E A 401 MG MG B 401 1555 1555 2.67 CISPEP 1 ALA A 233 GLY A 234 0 -0.20 CISPEP 2 ASN B 187 ASN B 188 0 1.95 CISPEP 3 ALA B 233 GLY B 234 0 -0.17 SITE 1 AC1 20 TYR A 167 ILE A 235 ARG A 238 VAL A 239 SITE 2 AC1 20 TYR A 240 SER A 241 GLU A 260 THR A 263 SITE 3 AC1 20 MG A 402 HOH A 501 TYR B 167 ILE B 235 SITE 4 AC1 20 ARG B 238 VAL B 239 TYR B 240 SER B 241 SITE 5 AC1 20 GLU B 260 THR B 263 MG B 401 HOH B 501 SITE 1 AC2 5 GLY A 166 ARG A 232 ARG A 238 TYR A 240 SITE 2 AC2 5 C2E A 401 SITE 1 AC3 5 C2E A 401 GLY B 166 ARG B 232 ARG B 238 SITE 2 AC3 5 TYR B 240 CRYST1 111.850 111.850 35.020 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008941 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028555 0.00000