PDB Short entry for 4FDC HEADER APOPTOSIS, OXIDOREDUCTASE 27-MAY-12 4FDC TITLE CRYSTAL STRUCTURE OF THE E493V MUTANT OF HUMAN APOPTOSIS INDUCING TITLE 2 FACTOR (AIF) COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: UNP RESIDUES 103-613; COMPND 5 SYNONYM: PROGRAMMED CELL DEATH PROTEIN 8; COMPND 6 EC: 1.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AIF, AIFM1, PDCD8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK KEYWDS ROSSMANN FOLD, MITOCHONDRION, APPOPTOSIS, OXIDOREDUCTASE, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR I.F.SEVRIOUKOVA REVDAT 3 13-SEP-23 4FDC 1 REMARK SEQADV REVDAT 2 02-JAN-13 4FDC 1 JRNL REVDAT 1 17-OCT-12 4FDC 0 JRNL AUTH C.RINALDI,C.GRUNSEICH,I.F.SEVRIOUKOVA,A.SCHINDLER, JRNL AUTH 2 I.HORKAYNE-SZAKALY,C.LAMPERTI,G.LANDOURE,M.L.KENNERSON, JRNL AUTH 3 B.G.BURNETT,C.BONNEMANN,L.G.BIESECKER,D.GHEZZI,M.ZEVIANI, JRNL AUTH 4 K.H.FISCHBECK JRNL TITL COWCHOCK SYNDROME IS ASSOCIATED WITH A MUTATION IN JRNL TITL 2 APOPTOSIS-INDUCING FACTOR. JRNL REF AM.J.HUM.GENET. V. 91 1095 2012 JRNL REFN ISSN 0002-9297 JRNL PMID 23217327 JRNL DOI 10.1016/J.AJHG.2012.10.008 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 20005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 130.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.395 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.314 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.305 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.854 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3674 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4976 ; 1.185 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 459 ; 5.858 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;34.723 ;23.442 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;17.126 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;15.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2747 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 128 B 610 REMARK 3 RESIDUE RANGE : B 1000 B 1000 REMARK 3 ORIGIN FOR THE GROUP (A): -11.8306 2.6970 -25.6071 REMARK 3 T TENSOR REMARK 3 T11: 0.3690 T22: 0.3401 REMARK 3 T33: 0.2269 T12: -0.2934 REMARK 3 T13: -0.0224 T23: 0.0879 REMARK 3 L TENSOR REMARK 3 L11: 2.9765 L22: 0.8914 REMARK 3 L33: 0.9080 L12: 1.1860 REMARK 3 L13: 0.4006 L23: -0.0266 REMARK 3 S TENSOR REMARK 3 S11: -0.5413 S12: 0.6170 S13: 0.1801 REMARK 3 S21: -0.2498 S22: 0.4488 S23: 0.0845 REMARK 3 S31: -0.0338 S32: 0.0268 S33: 0.0925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4FDC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000072758. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.45000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M6I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 1500, 0.1 M TRISHCL PH 8.5, 4% REMARK 280 ACETONE, MICROBATCH UNDER OIL, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.20000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 103 REMARK 465 LEU B 104 REMARK 465 THR B 105 REMARK 465 PRO B 106 REMARK 465 GLU B 107 REMARK 465 GLN B 108 REMARK 465 LYS B 109 REMARK 465 GLN B 110 REMARK 465 LYS B 111 REMARK 465 LYS B 112 REMARK 465 ALA B 113 REMARK 465 ALA B 114 REMARK 465 LEU B 115 REMARK 465 SER B 116 REMARK 465 ALA B 117 REMARK 465 SER B 118 REMARK 465 GLU B 119 REMARK 465 GLY B 120 REMARK 465 GLU B 121 REMARK 465 GLU B 122 REMARK 465 VAL B 123 REMARK 465 PRO B 124 REMARK 465 GLN B 125 REMARK 465 ASP B 126 REMARK 465 LYS B 127 REMARK 465 ALA B 538 REMARK 465 SER B 539 REMARK 465 GLU B 540 REMARK 465 ILE B 541 REMARK 465 THR B 542 REMARK 465 ILE B 543 REMARK 465 PRO B 544 REMARK 465 PRO B 545 REMARK 465 SER B 546 REMARK 465 THR B 547 REMARK 465 PRO B 548 REMARK 465 ALA B 549 REMARK 465 VAL B 550 REMARK 465 PRO B 551 REMARK 465 GLN B 552 REMARK 465 ALA B 553 REMARK 465 PRO B 554 REMARK 465 VAL B 555 REMARK 465 GLN B 556 REMARK 465 GLY B 557 REMARK 465 GLU B 558 REMARK 465 ASP B 559 REMARK 465 HIS B 611 REMARK 465 GLU B 612 REMARK 465 ASP B 613 REMARK 465 LEU B 614 REMARK 465 VAL B 615 REMARK 465 PRO B 616 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 417 NH2 ARG B 449 1.63 REMARK 500 O ALA B 407 CG GLU B 413 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 155 4.99 -59.40 REMARK 500 LYS B 177 -123.90 -127.16 REMARK 500 GLN B 195 -177.30 -68.69 REMARK 500 ASN B 222 -11.48 75.50 REMARK 500 ARG B 285 -32.21 -156.25 REMARK 500 SER B 376 36.77 74.51 REMARK 500 LEU B 406 11.29 -64.37 REMARK 500 LYS B 408 -62.72 -91.91 REMARK 500 GLU B 413 51.85 12.64 REMARK 500 ILE B 414 176.82 55.07 REMARK 500 ASP B 415 -114.71 -100.84 REMARK 500 SER B 416 -63.06 -179.01 REMARK 500 ALA B 472 -147.58 155.22 REMARK 500 LEU B 486 71.51 -108.57 REMARK 500 THR B 512 -159.90 -95.81 REMARK 500 ASP B 515 48.33 -96.72 REMARK 500 THR B 534 161.73 71.90 REMARK 500 ASP B 570 -115.23 66.71 REMARK 500 ASP B 600 -89.19 -122.06 REMARK 500 LEU B 601 -26.83 107.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1M6I RELATED DB: PDB REMARK 900 WILD TYPE HUMAN AIF DBREF 4FDC B 103 613 UNP O95831 AIFM1_HUMAN 103 613 SEQADV 4FDC VAL B 493 UNP O95831 GLU 493 ENGINEERED MUTATION SEQADV 4FDC LEU B 614 UNP O95831 EXPRESSION TAG SEQADV 4FDC VAL B 615 UNP O95831 EXPRESSION TAG SEQADV 4FDC PRO B 616 UNP O95831 EXPRESSION TAG SEQRES 1 B 514 GLY LEU THR PRO GLU GLN LYS GLN LYS LYS ALA ALA LEU SEQRES 2 B 514 SER ALA SER GLU GLY GLU GLU VAL PRO GLN ASP LYS ALA SEQRES 3 B 514 PRO SER HIS VAL PRO PHE LEU LEU ILE GLY GLY GLY THR SEQRES 4 B 514 ALA ALA PHE ALA ALA ALA ARG SER ILE ARG ALA ARG ASP SEQRES 5 B 514 PRO GLY ALA ARG VAL LEU ILE VAL SER GLU ASP PRO GLU SEQRES 6 B 514 LEU PRO TYR MET ARG PRO PRO LEU SER LYS GLU LEU TRP SEQRES 7 B 514 PHE SER ASP ASP PRO ASN VAL THR LYS THR LEU ARG PHE SEQRES 8 B 514 LYS GLN TRP ASN GLY LYS GLU ARG SER ILE TYR PHE GLN SEQRES 9 B 514 PRO PRO SER PHE TYR VAL SER ALA GLN ASP LEU PRO HIS SEQRES 10 B 514 ILE GLU ASN GLY GLY VAL ALA VAL LEU THR GLY LYS LYS SEQRES 11 B 514 VAL VAL GLN LEU ASP VAL ARG ASP ASN MET VAL LYS LEU SEQRES 12 B 514 ASN ASP GLY SER GLN ILE THR TYR GLU LYS CYS LEU ILE SEQRES 13 B 514 ALA THR GLY GLY THR PRO ARG SER LEU SER ALA ILE ASP SEQRES 14 B 514 ARG ALA GLY ALA GLU VAL LYS SER ARG THR THR LEU PHE SEQRES 15 B 514 ARG LYS ILE GLY ASP PHE ARG SER LEU GLU LYS ILE SER SEQRES 16 B 514 ARG GLU VAL LYS SER ILE THR ILE ILE GLY GLY GLY PHE SEQRES 17 B 514 LEU GLY SER GLU LEU ALA CYS ALA LEU GLY ARG LYS ALA SEQRES 18 B 514 ARG ALA LEU GLY THR GLU VAL ILE GLN LEU PHE PRO GLU SEQRES 19 B 514 LYS GLY ASN MET GLY LYS ILE LEU PRO GLU TYR LEU SER SEQRES 20 B 514 ASN TRP THR MET GLU LYS VAL ARG ARG GLU GLY VAL LYS SEQRES 21 B 514 VAL MET PRO ASN ALA ILE VAL GLN SER VAL GLY VAL SER SEQRES 22 B 514 SER GLY LYS LEU LEU ILE LYS LEU LYS ASP GLY ARG LYS SEQRES 23 B 514 VAL GLU THR ASP HIS ILE VAL ALA ALA VAL GLY LEU GLU SEQRES 24 B 514 PRO ASN VAL GLU LEU ALA LYS THR GLY GLY LEU GLU ILE SEQRES 25 B 514 ASP SER ASP PHE GLY GLY PHE ARG VAL ASN ALA GLU LEU SEQRES 26 B 514 GLN ALA ARG SER ASN ILE TRP VAL ALA GLY ASP ALA ALA SEQRES 27 B 514 CYS PHE TYR ASP ILE LYS LEU GLY ARG ARG ARG VAL GLU SEQRES 28 B 514 HIS HIS ASP HIS ALA VAL VAL SER GLY ARG LEU ALA GLY SEQRES 29 B 514 GLU ASN MET THR GLY ALA ALA LYS PRO TYR TRP HIS GLN SEQRES 30 B 514 SER MET PHE TRP SER ASP LEU GLY PRO ASP VAL GLY TYR SEQRES 31 B 514 VAL ALA ILE GLY LEU VAL ASP SER SER LEU PRO THR VAL SEQRES 32 B 514 GLY VAL PHE ALA LYS ALA THR ALA GLN ASP ASN PRO LYS SEQRES 33 B 514 SER ALA THR GLU GLN SER GLY THR GLY ILE ARG SER GLU SEQRES 34 B 514 SER GLU THR GLU SER GLU ALA SER GLU ILE THR ILE PRO SEQRES 35 B 514 PRO SER THR PRO ALA VAL PRO GLN ALA PRO VAL GLN GLY SEQRES 36 B 514 GLU ASP TYR GLY LYS GLY VAL ILE PHE TYR LEU ARG ASP SEQRES 37 B 514 LYS VAL VAL VAL GLY ILE VAL LEU TRP ASN ILE PHE ASN SEQRES 38 B 514 ARG MET PRO ILE ALA ARG LYS ILE ILE LYS ASP GLY GLU SEQRES 39 B 514 GLN HIS GLU ASP LEU ASN GLU VAL ALA LYS LEU PHE ASN SEQRES 40 B 514 ILE HIS GLU ASP LEU VAL PRO HET FAD B1000 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 HELIX 1 1 GLY B 140 ASP B 154 1 15 HELIX 2 2 ARG B 172 PHE B 181 5 10 HELIX 3 3 ASN B 186 LEU B 191 1 6 HELIX 4 4 PRO B 207 TYR B 211 5 5 HELIX 5 5 LEU B 267 ARG B 272 1 6 HELIX 6 6 GLY B 274 SER B 279 1 6 HELIX 7 7 LYS B 286 VAL B 300 1 15 HELIX 8 8 GLY B 309 GLY B 327 1 19 HELIX 9 9 PRO B 345 GLU B 359 1 15 HELIX 10 10 VAL B 404 LYS B 408 5 5 HELIX 11 11 HIS B 454 THR B 470 1 17 HELIX 12 12 ASN B 516 GLY B 525 1 10 HELIX 13 13 ILE B 528 GLU B 533 1 6 HELIX 14 14 ARG B 584 GLY B 595 1 12 HELIX 15 15 LEU B 601 LEU B 607 1 7 SHEET 1 A 6 GLY B 224 THR B 229 0 SHEET 2 A 6 ARG B 158 SER B 163 1 N ILE B 161 O ALA B 226 SHEET 3 A 6 HIS B 131 ILE B 137 1 N LEU B 136 O LEU B 160 SHEET 4 A 6 GLN B 250 ILE B 258 1 O LYS B 255 N PRO B 133 SHEET 5 A 6 MET B 242 LEU B 245 -1 N VAL B 243 O ILE B 251 SHEET 6 A 6 VAL B 233 ASP B 237 -1 N VAL B 234 O LYS B 244 SHEET 1 B 6 GLY B 224 THR B 229 0 SHEET 2 B 6 ARG B 158 SER B 163 1 N ILE B 161 O ALA B 226 SHEET 3 B 6 HIS B 131 ILE B 137 1 N LEU B 136 O LEU B 160 SHEET 4 B 6 GLN B 250 ILE B 258 1 O LYS B 255 N PRO B 133 SHEET 5 B 6 ILE B 433 VAL B 435 1 O TRP B 434 N CYS B 256 SHEET 6 B 6 GLN B 428 ARG B 430 -1 N ALA B 429 O ILE B 433 SHEET 1 C 2 ARG B 192 LYS B 194 0 SHEET 2 C 2 GLU B 200 SER B 202 -1 O ARG B 201 N PHE B 193 SHEET 1 D 2 GLY B 262 PRO B 264 0 SHEET 2 D 2 LEU B 400 PRO B 402 -1 O GLU B 401 N THR B 263 SHEET 1 E 5 THR B 281 LEU B 283 0 SHEET 2 E 5 HIS B 393 ALA B 396 1 O ALA B 396 N THR B 282 SHEET 3 E 5 SER B 302 ILE B 306 1 N THR B 304 O HIS B 393 SHEET 4 E 5 GLU B 329 LEU B 333 1 O ILE B 331 N ILE B 305 SHEET 5 E 5 LYS B 362 MET B 364 1 O MET B 364 N GLN B 332 SHEET 1 F 3 VAL B 369 VAL B 374 0 SHEET 2 F 3 LEU B 379 LEU B 383 -1 O LYS B 382 N GLN B 370 SHEET 3 F 3 LYS B 388 THR B 391 -1 O THR B 391 N LEU B 379 SHEET 1 G 3 PHE B 421 ARG B 422 0 SHEET 2 G 3 ALA B 440 ASP B 444 1 O CYS B 441 N PHE B 421 SHEET 3 G 3 GLY B 448 ARG B 451 -1 O GLY B 448 N ASP B 444 SHEET 1 H 5 PHE B 482 ASP B 485 0 SHEET 2 H 5 GLY B 491 GLY B 496 -1 O TYR B 492 N SER B 484 SHEET 3 H 5 VAL B 572 TRP B 579 -1 O LEU B 578 N VAL B 493 SHEET 4 H 5 LYS B 562 ARG B 569 -1 N GLY B 563 O TRP B 579 SHEET 5 H 5 THR B 504 ALA B 509 -1 N VAL B 505 O PHE B 566 CISPEP 1 GLY B 471 ALA B 472 0 5.43 SITE 1 AC1 25 GLY B 138 GLY B 139 GLY B 140 THR B 141 SITE 2 AC1 25 ALA B 142 VAL B 162 GLU B 164 ARG B 172 SITE 3 AC1 25 PRO B 173 SER B 176 LYS B 177 LYS B 232 SITE 4 AC1 25 VAL B 233 ALA B 259 THR B 260 GLY B 261 SITE 5 AC1 25 ARG B 285 LEU B 311 GLY B 437 ASP B 438 SITE 6 AC1 25 GLU B 453 HIS B 454 HIS B 455 PHE B 482 SITE 7 AC1 25 TRP B 483 CRYST1 102.400 62.700 101.922 90.00 118.57 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009766 0.000000 0.005318 0.00000 SCALE2 0.000000 0.015949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011172 0.00000