PDB Short entry for 4FI9 HEADER PROTEIN BINDING 08-JUN-12 4FI9 TITLE STRUCTURE OF HUMAN SUN-KASH COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUN DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUN DOMAIN (UNP RESIDUES 523-717); COMPND 5 SYNONYM: PROTEIN UNC-84 HOMOLOG B, RAB5-INTERACTING PROTEIN, RAB5IP, COMPND 6 SAD1/UNC-84 PROTEIN-LIKE 2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NESPRIN-2; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: KASH DOMAIN (UNP RESIDUES 6872-6883); COMPND 12 SYNONYM: NUCLEAR ENVELOPE SPECTRIN REPEAT PROTEIN 2, NUCLEUS AND COMPND 13 ACTIN CONNECTING ELEMENT PROTEIN, PROTEIN NUANCE, SYNAPTIC NUCLEAR COMPND 14 ENVELOPE PROTEIN 2, SYNE-2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SUN2, FRIGG, KIAA0668, RAB5IP, UNC84B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS LINC COMPLEX, TRANSMEMBRANE PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR W.J.WANG,Z.B.SHI REVDAT 2 06-MAR-13 4FI9 1 JRNL REVDAT 1 18-JUL-12 4FI9 0 JRNL AUTH W.WANG,Z.SHI,S.JIAO,C.CHEN,H.WANG,G.LIU,Q.WANG,Y.ZHAO, JRNL AUTH 2 M.I.GREENE,Z.ZHOU JRNL TITL STRUCTURAL INSIGHTS INTO SUN-KASH COMPLEXES ACROSS THE JRNL TITL 2 NUCLEAR ENVELOPE. JRNL REF CELL RES. V. 22 1440 2012 JRNL REFN ISSN 1001-0602 JRNL PMID 22945352 JRNL DOI 10.1038/CR.2012.126 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 6421 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1603 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.47000 REMARK 3 B22 (A**2) : -4.47000 REMARK 3 B33 (A**2) : 6.70000 REMARK 3 B12 (A**2) : -2.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 30.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.485 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.411 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 48.825 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.856 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1654 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2268 ; 1.338 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 207 ; 6.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;34.186 ;23.056 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 223 ;20.091 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ; 9.245 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 250 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1303 ; 0.006 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1047 ; 0.412 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1688 ; 0.803 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 607 ; 1.076 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 580 ; 1.928 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 523 A 717 REMARK 3 RESIDUE RANGE : A 801 A 802 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8124 -30.5801 -14.0200 REMARK 3 T TENSOR REMARK 3 T11: 0.1826 T22: 0.0161 REMARK 3 T33: 0.1450 T12: 0.0763 REMARK 3 T13: -0.0124 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.7454 L22: 3.0235 REMARK 3 L33: 3.8398 L12: -0.0366 REMARK 3 L13: 0.6010 L23: -1.1090 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: 0.4489 S13: 0.2740 REMARK 3 S21: -0.2742 S22: 0.0577 S23: 0.0951 REMARK 3 S31: -0.5532 S32: -0.1881 S33: -0.0124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FI9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-12. REMARK 100 THE RCSB ID CODE IS RCSB072934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6763 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MGCL2, 100 MM HEPES, 6% PEG5000 REMARK 280 MME, 19.5 MM HECAMEG, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 39.91750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 23.04638 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 93.40700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 39.91750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 23.04638 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 93.40700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 39.91750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 23.04638 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.40700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 39.91750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 23.04638 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 93.40700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 39.91750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 23.04638 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 93.40700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 39.91750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 23.04638 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 93.40700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 46.09276 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 186.81400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 46.09276 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 186.81400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 46.09276 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 186.81400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 46.09276 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 186.81400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 46.09276 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 186.81400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 46.09276 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 186.81400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -39.91750 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -69.13914 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 39.91750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -69.13914 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 534 CG CD OE1 NE2 REMARK 470 ARG A 562 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 565 CG CD OE1 OE2 REMARK 470 GLU A 568 CG CD OE1 OE2 REMARK 470 LYS A 570 CG CD CE NZ REMARK 470 LEU A 573 CG CD1 CD2 REMARK 470 LEU A 574 CG CD1 CD2 REMARK 470 LEU A 576 CG CD1 CD2 REMARK 470 PHE A 577 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 614 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 631 CE NZ REMARK 470 ASP A 652 CG OD1 OD2 REMARK 470 ASP A 654 CG OD1 OD2 REMARK 470 LYS A 664 CG CD CE NZ REMARK 470 GLU A 702 CG CD OE1 OE2 REMARK 470 GLU A 714 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 541 59.16 -96.34 REMARK 500 ARG A 543 -36.58 80.86 REMARK 500 SER A 560 -62.72 82.20 REMARK 500 CYS A 563 128.42 115.88 REMARK 500 SER A 564 157.24 -31.67 REMARK 500 PHE A 577 24.23 35.88 REMARK 500 LEU A 581 -71.20 -113.34 REMARK 500 ASN A 600 43.91 -78.66 REMARK 500 LYS A 644 -97.02 -102.45 REMARK 500 GLU A 653 -4.60 174.97 REMARK 500 ASP A 654 160.23 63.61 REMARK 500 LEU A 655 88.99 55.56 REMARK 500 GLN A 656 -63.22 93.06 REMARK 500 GLN A 657 -34.91 -28.99 REMARK 500 GLU A 658 -9.84 145.79 REMARK 500 ALA A 681 74.06 50.50 REMARK 500 ASN A 697 -167.62 -118.24 REMARK 500 ASN B6880 -143.39 -87.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 655 GLN A 656 141.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 656 22.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF NESPRIN-2 DBREF 4FI9 A 523 717 UNP Q9UH99 SUN2_HUMAN 523 717 DBREF 4FI9 B 6872 6885 UNP Q8WXH0 SYNE2_HUMAN 6872 6885 SEQRES 1 A 195 VAL THR GLU GLU GLN VAL HIS HIS ILE VAL LYS GLN ALA SEQRES 2 A 195 LEU GLN ARG TYR SER GLU ASP ARG ILE GLY LEU ALA ASP SEQRES 3 A 195 TYR ALA LEU GLU SER GLY GLY ALA SER VAL ILE SER THR SEQRES 4 A 195 ARG CYS SER GLU THR TYR GLU THR LYS THR ALA LEU LEU SEQRES 5 A 195 SER LEU PHE GLY ILE PRO LEU TRP TYR HIS SER GLN SER SEQRES 6 A 195 PRO ARG VAL ILE LEU GLN PRO ASP VAL HIS PRO GLY ASN SEQRES 7 A 195 CYS TRP ALA PHE GLN GLY PRO GLN GLY PHE ALA VAL VAL SEQRES 8 A 195 ARG LEU SER ALA ARG ILE ARG PRO THR ALA VAL THR LEU SEQRES 9 A 195 GLU HIS VAL PRO LYS ALA LEU SER PRO ASN SER THR ILE SEQRES 10 A 195 SER SER ALA PRO LYS ASP PHE ALA ILE PHE GLY PHE ASP SEQRES 11 A 195 GLU ASP LEU GLN GLN GLU GLY THR LEU LEU GLY LYS PHE SEQRES 12 A 195 THR TYR ASP GLN ASP GLY GLU PRO ILE GLN THR PHE HIS SEQRES 13 A 195 PHE GLN ALA PRO THR MET ALA THR TYR GLN VAL VAL GLU SEQRES 14 A 195 LEU ARG ILE LEU THR ASN TRP GLY HIS PRO GLU TYR THR SEQRES 15 A 195 CYS ILE TYR ARG PHE ARG VAL HIS GLY GLU PRO ALA HIS SEQRES 1 B 14 PHE TYR PRO MET LEU ARG TYR THR ASN GLY PRO PRO PRO SEQRES 2 B 14 THR FORMUL 3 HOH *2(H2 O) HELIX 1 1 THR A 524 SER A 540 1 17 HELIX 2 2 SER A 587 GLN A 593 5 7 HELIX 3 3 PRO A 630 THR A 638 5 9 SHEET 1 A 3 SER A 557 VAL A 558 0 SHEET 2 A 3 GLY A 609 GLU A 627 -1 O ARG A 614 N SER A 557 SHEET 3 A 3 ILE A 674 HIS A 678 -1 O PHE A 677 N VAL A 624 SHEET 1 B 5 THR A 660 THR A 666 0 SHEET 2 B 5 ASP A 645 PHE A 651 -1 N ILE A 648 O LEU A 662 SHEET 3 B 5 TYR A 687 ILE A 694 -1 O GLU A 691 N PHE A 649 SHEET 4 B 5 GLY A 609 GLU A 627 -1 N LEU A 615 O GLN A 688 SHEET 5 B 5 ARG A 708 PRO A 715 -1 O ARG A 710 N THR A 625 SHEET 1 C 3 ILE A 579 TYR A 583 0 SHEET 2 C 3 ALA A 572 LEU A 576 -1 N LEU A 574 O TRP A 582 SHEET 3 C 3 MET B6875 TYR B6878 -1 O ARG B6877 N LEU A 573 SHEET 1 D 2 TRP A 602 GLN A 605 0 SHEET 2 D 2 TYR A 703 ILE A 706 -1 O ILE A 706 N TRP A 602 SSBOND 1 CYS A 601 CYS A 705 1555 1555 2.07 SITE 1 AC1 23 GLU A 552 SER A 553 GLY A 554 GLY A 555 SITE 2 AC1 23 ALA A 556 SER A 557 VAL A 558 SER A 560 SITE 3 AC1 23 LYS A 570 THR A 571 ALA A 572 LEU A 573 SITE 4 AC1 23 LEU A 574 SER A 575 TRP A 582 TYR A 583 SITE 5 AC1 23 ARG A 589 GLY A 599 CYS A 601 SER A 641 SITE 6 AC1 23 TYR A 703 CYS A 705 TYR A 707 CRYST1 79.835 79.835 280.221 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012526 0.007232 0.000000 0.00000 SCALE2 0.000000 0.014464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003569 0.00000