PDB Short entry for 4FL6 HEADER TRANSCRIPTION 14-JUN-12 4FL6 TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF THE 3-MBT REPEAT DOMAIN OF L3MBTL3 TITLE 2 AND UNC1215 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: H-L(3)MBT-LIKE PROTEIN 3, L(3)MBT-LIKE PROTEIN 3, MBT-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1798, L3MBTL3, MBT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS STRUCTURAL GENOMICS CONSORTIUM, SGC, CHROMATIN MODIFICATION, KEYWDS 2 TRANSCRIPTION REPRESSION, MBT REPEAT, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHONG,W.TEMPEL,M.RAVICHANDRAN,A.DONG,L.A.INGERMAN,S.GRASLUND, AUTHOR 2 S.V.FRYE,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 3 13-SEP-23 4FL6 1 REMARK SEQADV REVDAT 2 16-MAY-18 4FL6 1 JRNL REVDAT 1 27-JUN-12 4FL6 0 JRNL AUTH L.I.JAMES,D.BARSYTE-LOVEJOY,N.ZHONG,L.KRICHEVSKY, JRNL AUTH 2 V.K.KORBOUKH,J.M.HEROLD,C.J.MACNEVIN,J.L.NORRIS,C.A.SAGUM, JRNL AUTH 3 W.TEMPEL,E.MARCON,H.GUO,C.GAO,X.P.HUANG,S.DUAN,A.EMILI, JRNL AUTH 4 J.F.GREENBLATT,D.B.KIREEV,J.JIN,W.P.JANZEN,P.J.BROWN, JRNL AUTH 5 M.T.BEDFORD,C.H.ARROWSMITH,S.V.FRYE JRNL TITL DISCOVERY OF A CHEMICAL PROBE FOR THE L3MBTL3 METHYLLYSINE JRNL TITL 2 READER DOMAIN. JRNL REF NAT. CHEM. BIOL. V. 9 184 2013 JRNL REFN ESSN 1552-4469 JRNL PMID 23292653 JRNL DOI 10.1038/NCHEMBIO.1157 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 26070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1330 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2308 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2874 REMARK 3 BIN R VALUE (WORKING SET) : 0.2308 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4697 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70470 REMARK 3 B22 (A**2) : 1.97310 REMARK 3 B33 (A**2) : -1.26840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.40070 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.371 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.415 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4964 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6817 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1456 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 85 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 745 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4964 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 622 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5336 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.94 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.97 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.5396 -22.8592 32.9375 REMARK 3 T TENSOR REMARK 3 T11: -0.2002 T22: -0.2302 REMARK 3 T33: -0.2121 T12: 0.0474 REMARK 3 T13: 0.0105 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.5461 L22: 2.4011 REMARK 3 L33: 2.3223 L12: -0.1216 REMARK 3 L13: 0.5873 L23: 0.8810 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: 0.2302 S13: 0.1724 REMARK 3 S21: -0.2095 S22: -0.0987 S23: 0.3507 REMARK 3 S31: -0.2589 S32: -0.2430 S33: 0.1470 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.0836 -18.8733 59.3347 REMARK 3 T TENSOR REMARK 3 T11: -0.2381 T22: -0.2319 REMARK 3 T33: -0.2551 T12: -0.0554 REMARK 3 T13: 0.0317 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.7077 L22: 2.2365 REMARK 3 L33: 2.7351 L12: -0.2724 REMARK 3 L13: -0.5349 L23: 0.4711 REMARK 3 S TENSOR REMARK 3 S11: 0.1418 S12: -0.1008 S13: 0.0562 REMARK 3 S21: 0.0441 S22: -0.1679 S23: 0.4525 REMARK 3 S31: 0.0489 S32: -0.3989 S33: 0.0262 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LIGAND GEOMETRY RESTRAINTS WERE REMARK 3 PREPARED WITH PRODRG. COOT, REFMAC AND THE MOLPROBITY SERVER REMARK 3 WERE ALSO USED DURING REFINEMENT. REMARK 4 REMARK 4 4FL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000073036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26075 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.680 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.2968 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.48 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: RELATED TO PDB ENTRY 3UT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG-3350, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 114.01300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.18600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 114.01300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.18600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT BIOLOGICAL UNIT HAS NOT BEEN DETERMINED REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 228 REMARK 465 LYS A 229 REMARK 465 LYS A 230 REMARK 465 ASN A 361 REMARK 465 GLN A 362 REMARK 465 ASN A 363 REMARK 465 ILE A 364 REMARK 465 THR A 365 REMARK 465 SER A 545 REMARK 465 PRO A 546 REMARK 465 LEU A 547 REMARK 465 GLU A 548 REMARK 465 LEU A 549 REMARK 465 MET A 550 REMARK 465 GLU A 551 REMARK 465 ALA A 552 REMARK 465 SER A 553 REMARK 465 HIS A 554 REMARK 465 HIS A 555 REMARK 465 HIS A 556 REMARK 465 HIS A 557 REMARK 465 HIS A 558 REMARK 465 HIS A 559 REMARK 465 MET B 228 REMARK 465 LYS B 229 REMARK 465 LYS B 230 REMARK 465 GLN B 362 REMARK 465 ASN B 363 REMARK 465 ILE B 364 REMARK 465 THR B 365 REMARK 465 VAL B 366 REMARK 465 ILE B 367 REMARK 465 PRO B 368 REMARK 465 LYS B 446 REMARK 465 SER B 545 REMARK 465 PRO B 546 REMARK 465 LEU B 547 REMARK 465 GLU B 548 REMARK 465 LEU B 549 REMARK 465 MET B 550 REMARK 465 GLU B 551 REMARK 465 ALA B 552 REMARK 465 SER B 553 REMARK 465 HIS B 554 REMARK 465 HIS B 555 REMARK 465 HIS B 556 REMARK 465 HIS B 557 REMARK 465 HIS B 558 REMARK 465 HIS B 559 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 233 SG REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 252 CD CE NZ REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 TYR A 259 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 324 CE NZ REMARK 470 LYS A 328 CE NZ REMARK 470 LYS A 333 NZ REMARK 470 LYS A 336 CG CD CE NZ REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS A 356 NZ REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 VAL A 366 CG1 CG2 REMARK 470 ILE A 367 CG1 CG2 CD1 REMARK 470 ASN A 399 CG OD1 ND2 REMARK 470 LYS A 430 CE NZ REMARK 470 LYS A 446 NZ REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 GLU A 455 CD OE1 OE2 REMARK 470 ARG A 465 NH1 NH2 REMARK 470 LYS A 468 CD CE NZ REMARK 470 GLN A 476 CD OE1 NE2 REMARK 470 LYS A 477 CG CD CE NZ REMARK 470 LYS A 478 CG CD CE NZ REMARK 470 LYS A 486 CE NZ REMARK 470 ASN A 488 CG OD1 ND2 REMARK 470 LYS A 506 CE NZ REMARK 470 VAL A 507 CG1 CG2 REMARK 470 ASP A 517 CG OD1 OD2 REMARK 470 SER A 534 OG REMARK 470 LYS A 535 CD CE NZ REMARK 470 LEU A 544 CG CD1 CD2 REMARK 470 CYS B 233 SG REMARK 470 LEU B 238 CG CD1 CD2 REMARK 470 GLU B 239 CG CD OE1 OE2 REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 470 GLU B 241 CG CD OE1 OE2 REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 VAL B 244 CG1 CG2 REMARK 470 VAL B 246 CG1 CG2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 LEU B 250 CG CD1 CD2 REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 GLU B 253 CG CD OE1 OE2 REMARK 470 HIS B 254 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 259 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 260 OD1 ND2 REMARK 470 LYS B 261 CG CD CE NZ REMARK 470 LYS B 265 CG CD CE NZ REMARK 470 GLU B 276 CD OE1 OE2 REMARK 470 GLU B 323 CG CD OE1 OE2 REMARK 470 LYS B 324 CD CE NZ REMARK 470 LYS B 328 CD CE NZ REMARK 470 LYS B 336 CG CD CE NZ REMARK 470 GLU B 337 CG CD OE1 OE2 REMARK 470 GLU B 338 CG CD OE1 OE2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 LYS B 350 CG CD CE NZ REMARK 470 GLN B 352 CG CD OE1 NE2 REMARK 470 LYS B 356 CE NZ REMARK 470 GLU B 360 CG CD OE1 OE2 REMARK 470 ASN B 361 CG OD1 ND2 REMARK 470 SER B 369 OG REMARK 470 ARG B 372 CD NE CZ NH1 NH2 REMARK 470 ASN B 399 CG OD1 ND2 REMARK 470 GLU B 417 CD OE1 OE2 REMARK 470 LYS B 430 CG CD CE NZ REMARK 470 GLU B 431 CD OE1 OE2 REMARK 470 ARG B 433 CZ NH1 NH2 REMARK 470 ASN B 444 CG OD1 ND2 REMARK 470 VAL B 445 C O CB CG1 CG2 REMARK 470 LYS B 452 CG CD CE NZ REMARK 470 GLU B 455 CG CD OE1 OE2 REMARK 470 LEU B 460 CG CD1 CD2 REMARK 470 LYS B 468 CD CE NZ REMARK 470 VAL B 469 CG1 CG2 REMARK 470 LYS B 470 CD CE NZ REMARK 470 GLN B 476 CG CD OE1 NE2 REMARK 470 LYS B 477 CG CD CE NZ REMARK 470 LYS B 478 CG CD CE NZ REMARK 470 LYS B 480 CD CE NZ REMARK 470 LYS B 486 CE NZ REMARK 470 ARG B 487 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 488 CG OD1 ND2 REMARK 470 VAL B 494 CG1 CG2 REMARK 470 VAL B 507 CG1 CG2 REMARK 470 ASP B 526 CG OD1 OD2 REMARK 470 SER B 534 OG REMARK 470 LYS B 535 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 332 172.01 -56.48 REMARK 500 ASP A 398 -124.49 61.45 REMARK 500 CYS A 416 -163.95 -165.11 REMARK 500 VAL A 445 -61.82 -106.33 REMARK 500 LYS A 478 -11.90 90.45 REMARK 500 PRO A 489 0.44 -65.87 REMARK 500 TRP B 232 146.88 -174.07 REMARK 500 LYS B 350 49.95 39.45 REMARK 500 GLU B 360 75.87 -67.21 REMARK 500 ASP B 398 -121.92 63.01 REMARK 500 LYS B 478 -9.93 92.59 REMARK 500 PRO B 489 8.92 -68.15 REMARK 500 ASP B 501 -164.98 -116.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UWN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UWN A 1002 DBREF 4FL6 A 229 553 UNP Q96JM7 LMBL3_HUMAN 229 553 DBREF 4FL6 B 229 553 UNP Q96JM7 LMBL3_HUMAN 229 553 SEQADV 4FL6 MET A 228 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS A 554 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS A 555 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS A 556 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS A 557 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS A 558 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS A 559 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 MET B 228 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS B 554 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS B 555 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS B 556 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS B 557 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS B 558 UNP Q96JM7 EXPRESSION TAG SEQADV 4FL6 HIS B 559 UNP Q96JM7 EXPRESSION TAG SEQRES 1 A 332 MET LYS LYS ALA TRP CYS TRP ALA SER TYR LEU GLU GLU SEQRES 2 A 332 GLU LYS ALA VAL ALA VAL PRO ALA LYS LEU PHE LYS GLU SEQRES 3 A 332 HIS GLN SER PHE PRO TYR ASN LYS ASN GLY PHE LYS VAL SEQRES 4 A 332 GLY MET LYS LEU GLU GLY VAL ASP PRO GLU HIS GLN SER SEQRES 5 A 332 VAL TYR CYS VAL LEU THR VAL ALA GLU VAL CYS GLY TYR SEQRES 6 A 332 ARG ILE LYS LEU HIS PHE ASP GLY TYR SER ASP CYS TYR SEQRES 7 A 332 ASP PHE TRP VAL ASN ALA ASP ALA LEU ASP ILE HIS PRO SEQRES 8 A 332 VAL GLY TRP CYS GLU LYS THR GLY HIS LYS LEU HIS PRO SEQRES 9 A 332 PRO LYS GLY TYR LYS GLU GLU GLU PHE ASN TRP GLN THR SEQRES 10 A 332 TYR LEU LYS THR CYS LYS ALA GLN ALA ALA PRO LYS SER SEQRES 11 A 332 LEU PHE GLU ASN GLN ASN ILE THR VAL ILE PRO SER GLY SEQRES 12 A 332 PHE ARG VAL GLY MET LYS LEU GLU ALA VAL ASP LYS LYS SEQRES 13 A 332 ASN PRO SER PHE ILE CYS VAL ALA THR VAL THR ASP MET SEQRES 14 A 332 VAL ASP ASN ARG PHE LEU VAL HIS PHE ASP ASN TRP ASP SEQRES 15 A 332 GLU SER TYR ASP TYR TRP CYS GLU ALA SER SER PRO HIS SEQRES 16 A 332 ILE HIS PRO VAL GLY TRP CYS LYS GLU HIS ARG ARG THR SEQRES 17 A 332 LEU ILE THR PRO PRO GLY TYR PRO ASN VAL LYS HIS PHE SEQRES 18 A 332 SER TRP ASP LYS TYR LEU GLU GLU THR ASN SER LEU PRO SEQRES 19 A 332 ALA PRO ALA ARG ALA PHE LYS VAL LYS PRO PRO HIS GLY SEQRES 20 A 332 PHE GLN LYS LYS MET LYS LEU GLU VAL VAL ASP LYS ARG SEQRES 21 A 332 ASN PRO MET PHE ILE ARG VAL ALA THR VAL ALA ASP THR SEQRES 22 A 332 ASP ASP HIS ARG VAL LYS VAL HIS PHE ASP GLY TRP ASN SEQRES 23 A 332 ASN CYS TYR ASP TYR TRP ILE ASP ALA ASP SER PRO ASP SEQRES 24 A 332 ILE HIS PRO VAL GLY TRP CYS SER LYS THR GLY HIS PRO SEQRES 25 A 332 LEU GLN PRO PRO LEU SER PRO LEU GLU LEU MET GLU ALA SEQRES 26 A 332 SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 332 MET LYS LYS ALA TRP CYS TRP ALA SER TYR LEU GLU GLU SEQRES 2 B 332 GLU LYS ALA VAL ALA VAL PRO ALA LYS LEU PHE LYS GLU SEQRES 3 B 332 HIS GLN SER PHE PRO TYR ASN LYS ASN GLY PHE LYS VAL SEQRES 4 B 332 GLY MET LYS LEU GLU GLY VAL ASP PRO GLU HIS GLN SER SEQRES 5 B 332 VAL TYR CYS VAL LEU THR VAL ALA GLU VAL CYS GLY TYR SEQRES 6 B 332 ARG ILE LYS LEU HIS PHE ASP GLY TYR SER ASP CYS TYR SEQRES 7 B 332 ASP PHE TRP VAL ASN ALA ASP ALA LEU ASP ILE HIS PRO SEQRES 8 B 332 VAL GLY TRP CYS GLU LYS THR GLY HIS LYS LEU HIS PRO SEQRES 9 B 332 PRO LYS GLY TYR LYS GLU GLU GLU PHE ASN TRP GLN THR SEQRES 10 B 332 TYR LEU LYS THR CYS LYS ALA GLN ALA ALA PRO LYS SER SEQRES 11 B 332 LEU PHE GLU ASN GLN ASN ILE THR VAL ILE PRO SER GLY SEQRES 12 B 332 PHE ARG VAL GLY MET LYS LEU GLU ALA VAL ASP LYS LYS SEQRES 13 B 332 ASN PRO SER PHE ILE CYS VAL ALA THR VAL THR ASP MET SEQRES 14 B 332 VAL ASP ASN ARG PHE LEU VAL HIS PHE ASP ASN TRP ASP SEQRES 15 B 332 GLU SER TYR ASP TYR TRP CYS GLU ALA SER SER PRO HIS SEQRES 16 B 332 ILE HIS PRO VAL GLY TRP CYS LYS GLU HIS ARG ARG THR SEQRES 17 B 332 LEU ILE THR PRO PRO GLY TYR PRO ASN VAL LYS HIS PHE SEQRES 18 B 332 SER TRP ASP LYS TYR LEU GLU GLU THR ASN SER LEU PRO SEQRES 19 B 332 ALA PRO ALA ARG ALA PHE LYS VAL LYS PRO PRO HIS GLY SEQRES 20 B 332 PHE GLN LYS LYS MET LYS LEU GLU VAL VAL ASP LYS ARG SEQRES 21 B 332 ASN PRO MET PHE ILE ARG VAL ALA THR VAL ALA ASP THR SEQRES 22 B 332 ASP ASP HIS ARG VAL LYS VAL HIS PHE ASP GLY TRP ASN SEQRES 23 B 332 ASN CYS TYR ASP TYR TRP ILE ASP ALA ASP SER PRO ASP SEQRES 24 B 332 ILE HIS PRO VAL GLY TRP CYS SER LYS THR GLY HIS PRO SEQRES 25 B 332 LEU GLN PRO PRO LEU SER PRO LEU GLU LEU MET GLU ALA SEQRES 26 B 332 SER HIS HIS HIS HIS HIS HIS HET UWN A1001 39 HET UWN A1002 39 HET UNX A1003 1 HET UNX A1004 1 HET UNX A1005 1 HET UNX A1006 1 HET UNX A1007 1 HET UNX A1008 1 HET UNX A1009 1 HET UNX A1010 1 HET UNX A1011 1 HET UNX A1012 1 HET UNX A1013 1 HET UNX A1014 1 HET UNX A1015 1 HET UNX A1016 1 HET UNX A1017 1 HET UNX A1018 1 HET UNX A1019 1 HET UNX A1020 1 HET UNX A1021 1 HET UNX A1022 1 HET UNX A1023 1 HET UNX A1024 1 HET UNX A1025 1 HET UNX A1026 1 HET UNX B 601 1 HET UNX B 602 1 HET UNX B 603 1 HET UNX B 604 1 HET UNX B 605 1 HETNAM UWN [2-(PHENYLAMINO)BENZENE-1,4-DIYL]BIS{[4-(PYRROLIDIN-1- HETNAM 2 UWN YL)PIPERIDIN-1-YL]METHANONE} HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UWN 2(C32 H43 N5 O2) FORMUL 5 UNX 29(X) HELIX 1 1 CYS A 233 LYS A 242 1 10 HELIX 2 2 PRO A 247 PHE A 251 5 5 HELIX 3 3 SER A 302 ASP A 306 5 5 HELIX 4 4 GLY A 320 GLY A 326 1 7 HELIX 5 5 LYS A 336 PHE A 340 5 5 HELIX 6 6 ASN A 341 CYS A 349 1 9 HELIX 7 7 PRO A 355 PHE A 359 5 5 HELIX 8 8 ASP A 409 ASP A 413 5 5 HELIX 9 9 GLY A 427 HIS A 432 1 6 HELIX 10 10 SER A 449 THR A 457 1 9 HELIX 11 11 PRO A 463 PHE A 467 5 5 HELIX 12 12 GLY A 531 GLY A 537 1 7 HELIX 13 13 CYS B 233 GLU B 241 1 9 HELIX 14 14 PRO B 247 PHE B 251 5 5 HELIX 15 15 SER B 302 ASP B 306 5 5 HELIX 16 16 GLY B 320 THR B 325 1 6 HELIX 17 17 LYS B 336 PHE B 340 5 5 HELIX 18 18 ASN B 341 CYS B 349 1 9 HELIX 19 19 PRO B 355 GLU B 360 5 6 HELIX 20 20 ASP B 409 ASP B 413 5 5 HELIX 21 21 GLY B 427 HIS B 432 1 6 HELIX 22 22 SER B 449 THR B 457 1 9 HELIX 23 23 GLY B 531 GLY B 537 1 7 SHEET 1 A 5 PHE A 307 ASN A 310 0 SHEET 2 A 5 ARG A 293 PHE A 298 -1 N LEU A 296 O PHE A 307 SHEET 3 A 5 HIS A 277 CYS A 290 -1 N ALA A 287 O LYS A 295 SHEET 4 A 5 LYS A 269 ASP A 274 -1 N GLY A 272 O CYS A 282 SHEET 5 A 5 ILE A 316 HIS A 317 -1 O HIS A 317 N GLU A 271 SHEET 1 B 5 TYR A 414 GLU A 417 0 SHEET 2 B 5 ARG A 400 PHE A 405 -1 N VAL A 403 O TYR A 414 SHEET 3 B 5 ASN A 384 VAL A 397 -1 N VAL A 397 O ARG A 400 SHEET 4 B 5 LYS A 376 ASP A 381 -1 N ALA A 379 O CYS A 389 SHEET 5 B 5 ILE A 423 HIS A 424 -1 O HIS A 424 N GLU A 378 SHEET 1 C 4 TYR A 414 GLU A 417 0 SHEET 2 C 4 ARG A 400 PHE A 405 -1 N VAL A 403 O TYR A 414 SHEET 3 C 4 ASN A 384 VAL A 397 -1 N VAL A 397 O ARG A 400 SHEET 4 C 4 LEU A 436 ILE A 437 1 O ILE A 437 N ILE A 388 SHEET 1 D 5 TYR A 518 ASP A 521 0 SHEET 2 D 5 ARG A 504 PHE A 509 -1 N VAL A 505 O ILE A 520 SHEET 3 D 5 ILE A 492 THR A 500 -1 N ALA A 498 O LYS A 506 SHEET 4 D 5 LYS A 480 VAL A 484 -1 N VAL A 483 O ARG A 493 SHEET 5 D 5 ILE A 527 HIS A 528 -1 O HIS A 528 N GLU A 482 SHEET 1 E 4 TYR A 518 ASP A 521 0 SHEET 2 E 4 ARG A 504 PHE A 509 -1 N VAL A 505 O ILE A 520 SHEET 3 E 4 ILE A 492 THR A 500 -1 N ALA A 498 O LYS A 506 SHEET 4 E 4 LEU A 540 GLN A 541 1 O GLN A 541 N ILE A 492 SHEET 1 F 5 PHE B 307 ASN B 310 0 SHEET 2 F 5 ARG B 293 PHE B 298 -1 N LEU B 296 O PHE B 307 SHEET 3 F 5 HIS B 277 CYS B 290 -1 N THR B 285 O HIS B 297 SHEET 4 F 5 LYS B 269 ASP B 274 -1 N GLY B 272 O CYS B 282 SHEET 5 F 5 ILE B 316 HIS B 317 -1 O HIS B 317 N GLU B 271 SHEET 1 G 4 PHE B 307 ASN B 310 0 SHEET 2 G 4 ARG B 293 PHE B 298 -1 N LEU B 296 O PHE B 307 SHEET 3 G 4 HIS B 277 CYS B 290 -1 N THR B 285 O HIS B 297 SHEET 4 G 4 LEU B 329 HIS B 330 1 O HIS B 330 N TYR B 281 SHEET 1 H 5 TYR B 414 CYS B 416 0 SHEET 2 H 5 ARG B 400 PHE B 405 -1 N PHE B 401 O CYS B 416 SHEET 3 H 5 ASN B 384 VAL B 397 -1 N THR B 392 O HIS B 404 SHEET 4 H 5 LYS B 376 ASP B 381 -1 N ALA B 379 O CYS B 389 SHEET 5 H 5 ILE B 423 HIS B 424 -1 O HIS B 424 N GLU B 378 SHEET 1 I 4 TYR B 414 CYS B 416 0 SHEET 2 I 4 ARG B 400 PHE B 405 -1 N PHE B 401 O CYS B 416 SHEET 3 I 4 ASN B 384 VAL B 397 -1 N THR B 392 O HIS B 404 SHEET 4 I 4 LEU B 436 ILE B 437 1 O ILE B 437 N ILE B 388 SHEET 1 J 5 TYR B 518 ASP B 521 0 SHEET 2 J 5 ARG B 504 PHE B 509 -1 N VAL B 505 O ILE B 520 SHEET 3 J 5 ILE B 492 THR B 500 -1 N ASP B 499 O LYS B 506 SHEET 4 J 5 LYS B 480 VAL B 484 -1 N VAL B 483 O ARG B 493 SHEET 5 J 5 ILE B 527 HIS B 528 -1 O HIS B 528 N GLU B 482 SHEET 1 K 4 TYR B 518 ASP B 521 0 SHEET 2 K 4 ARG B 504 PHE B 509 -1 N VAL B 505 O ILE B 520 SHEET 3 K 4 ILE B 492 THR B 500 -1 N ASP B 499 O LYS B 506 SHEET 4 K 4 LEU B 540 GLN B 541 1 O GLN B 541 N ILE B 492 SITE 1 AC1 16 ASP A 381 ASN A 384 PHE A 387 CYS A 389 SITE 2 AC1 16 PHE A 405 TRP A 408 TYR A 412 ASP B 274 SITE 3 AC1 16 HIS B 277 PHE B 298 TYR B 301 TYR B 305 SITE 4 AC1 16 HIS B 330 ASP B 409 GLU B 410 SER B 411 SITE 1 AC2 16 ASP A 274 HIS A 277 PHE A 298 TYR A 301 SITE 2 AC2 16 TYR A 305 HIS A 330 ASP A 409 GLU A 410 SITE 3 AC2 16 SER A 411 ASP B 381 ASN B 384 PHE B 387 SITE 4 AC2 16 CYS B 389 PHE B 405 TRP B 408 TYR B 412 CRYST1 228.026 54.372 65.549 90.00 97.11 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004385 0.000000 0.000547 0.00000 SCALE2 0.000000 0.018392 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015374 0.00000