PDB Short entry for 4FZX HEADER HYDROLASE/DNA 08-JUL-12 4FZX TITLE EXONUCLEASE X IN COMPLEX WITH 3' OVERHANGING DUPLEX DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*GP*TP*CP*AP*TP*TP*GP*TP*GP*GP*AP*TP*CP*CP*GP*AP*G)-3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*CP*GP*GP*AP*TP*CP*CP*AP*CP*AP*AP*TP*GP*AP*CP*CP*T)-3'); COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: EXODEOXYRIBONUCLEASE 10; COMPND 13 CHAIN: C, D; COMPND 14 FRAGMENT: UNP RESIDUES 1-167; COMPND 15 SYNONYM: EXODEOXYRIBONUCLEASE X, EXO X, EXONUCLEASE X; COMPND 16 EC: 3.1.11.-; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 7 ORGANISM_TAXID: 83333; SOURCE 8 STRAIN: K12; SOURCE 9 GENE: EXOX; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EXO, DNAQ FAMILY, DEDDH, EXONUCLEASE, NUCLEASE, MISMATCH REPAIR, UV KEYWDS 2 REPAIR, HOMOLOGOUS RECOMBINATION, STABILIZATION OF TANDEM REPEAT, KEYWDS 3 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.WANG,H.SUN,F.CHENG,L.BI,T.JIANG REVDAT 2 09-OCT-13 4FZX 1 JRNL REVDAT 1 03-JUL-13 4FZX 0 JRNL AUTH T.WANG,H.L.SUN,F.CHENG,X.E.ZHANG,L.BI,T.JIANG JRNL TITL RECOGNITION AND PROCESSING OF DOUBLE-STRANDED DNA BY EXOX, A JRNL TITL 2 DISTRIBUTIVE 3'-5' EXONUCLEASE JRNL REF NUCLEIC ACIDS RES. V. 41 7556 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23771145 JRNL DOI 10.1093/NAR/GKT495 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 18436 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2636 REMARK 3 NUCLEIC ACID ATOMS : 697 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : 1.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.376 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3486 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4885 ; 0.938 ; 2.207 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 7.697 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;33.268 ;22.982 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;16.191 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;11.963 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2391 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1660 ; 1.013 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2702 ; 1.967 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1826 ; 3.628 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2183 ; 5.086 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4FZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-12. REMARK 100 THE RCSB ID CODE IS RCSB073562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 0.2M NACL, 20% PEG3350, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.73750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.56200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.96350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.56200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.73750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.96350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG C 167 REMARK 465 LEU C 168 REMARK 465 GLU C 169 REMARK 465 HIS C 170 REMARK 465 HIS C 171 REMARK 465 HIS C 172 REMARK 465 HIS C 173 REMARK 465 HIS C 174 REMARK 465 HIS C 175 REMARK 465 ARG D 167 REMARK 465 LEU D 168 REMARK 465 GLU D 169 REMARK 465 HIS D 170 REMARK 465 HIS D 171 REMARK 465 HIS D 172 REMARK 465 HIS D 173 REMARK 465 HIS D 174 REMARK 465 HIS D 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 81 64.75 64.84 REMARK 500 HIS C 134 11.06 83.53 REMARK 500 ASN D 81 61.79 60.23 REMARK 500 PRO D 93 51.68 -92.54 REMARK 500 HIS D 134 6.63 86.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 139 OD2 REMARK 620 2 GLU C 8 OE2 108.9 REMARK 620 3 DG B 17 OP1 135.1 108.9 REMARK 620 4 ASP C 6 OD2 107.5 59.2 112.2 REMARK 620 5 ASP C 6 OD1 114.8 97.9 82.7 43.2 REMARK 620 6 HOH C 378 O 88.0 82.3 74.0 141.3 155.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 139 OD2 REMARK 620 2 DT A 17 OP1 131.1 REMARK 620 3 GLU D 8 OE2 114.1 107.2 REMARK 620 4 ASP D 6 OD1 109.3 87.2 100.1 REMARK 620 5 ASP D 6 OD2 119.6 104.2 57.1 43.4 REMARK 620 6 HOH D 363 O 84.8 68.8 91.5 155.6 145.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 17 OP1 REMARK 620 2 DC A 16 O3' 57.1 REMARK 620 3 ASP D 6 OD1 88.3 144.6 REMARK 620 4 HOH D 360 O 158.6 107.1 104.0 REMARK 620 5 HOH D 307 O 103.4 96.4 98.9 92.1 REMARK 620 6 HOH A 204 O 84.7 95.7 71.8 82.7 167.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 6 OD1 REMARK 620 2 DG B 17 OP1 93.3 REMARK 620 3 DA B 16 O3' 147.8 54.5 REMARK 620 4 HOH C 376 O 85.2 98.9 98.6 REMARK 620 5 HOH C 308 O 108.4 156.7 103.5 91.5 REMARK 620 6 HOH C 377 O 78.2 78.8 93.7 163.0 97.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FZY RELATED DB: PDB REMARK 900 RELATED ID: 4FZZ RELATED DB: PDB DBREF 4FZX C 1 167 UNP P0AEK0 EXOX_ECOLI 1 167 DBREF 4FZX D 1 167 UNP P0AEK0 EXOX_ECOLI 1 167 DBREF 4FZX B 1 17 PDB 4FZX 4FZX 1 17 DBREF 4FZX A 1 17 PDB 4FZX 4FZX 1 17 SEQADV 4FZX LEU C 168 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX GLU C 169 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS C 170 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS C 171 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS C 172 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS C 173 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS C 174 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS C 175 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX LEU D 168 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX GLU D 169 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS D 170 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS D 171 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS D 172 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS D 173 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS D 174 UNP P0AEK0 EXPRESSION TAG SEQADV 4FZX HIS D 175 UNP P0AEK0 EXPRESSION TAG SEQRES 1 B 17 DG DT DC DA DT DT DG DT DG DG DA DT DC SEQRES 2 B 17 DC DG DA DG SEQRES 1 A 17 DC DG DG DA DT DC DC DA DC DA DA DT DG SEQRES 2 A 17 DA DC DC DT SEQRES 1 C 175 MSE LEU ARG ILE ILE ASP THR GLU THR CYS GLY LEU GLN SEQRES 2 C 175 GLY GLY ILE VAL GLU ILE ALA SER VAL ASP VAL ILE ASP SEQRES 3 C 175 GLY LYS ILE VAL ASN PRO MSE SER HIS LEU VAL ARG PRO SEQRES 4 C 175 ASP ARG PRO ILE SER PRO GLN ALA MSE ALA ILE HIS ARG SEQRES 5 C 175 ILE THR GLU ALA MSE VAL ALA ASP LYS PRO TRP ILE GLU SEQRES 6 C 175 ASP VAL ILE PRO HIS TYR TYR GLY SER GLU TRP TYR VAL SEQRES 7 C 175 ALA HIS ASN ALA SER PHE ASP ARG ARG VAL LEU PRO GLU SEQRES 8 C 175 MSE PRO GLY GLU TRP ILE CYS THR MSE LYS LEU ALA ARG SEQRES 9 C 175 ARG LEU TRP PRO GLY ILE LYS TYR SER ASN MSE ALA LEU SEQRES 10 C 175 TYR LYS THR ARG LYS LEU ASN VAL GLN THR PRO PRO GLY SEQRES 11 C 175 LEU HIS HIS HIS ARG ALA LEU TYR ASP CYS TYR ILE THR SEQRES 12 C 175 ALA ALA LEU LEU ILE ASP ILE MSE ASN THR SER GLY TRP SEQRES 13 C 175 THR ALA GLU GLN MSE ALA ASP ILE THR GLY ARG LEU GLU SEQRES 14 C 175 HIS HIS HIS HIS HIS HIS SEQRES 1 D 175 MSE LEU ARG ILE ILE ASP THR GLU THR CYS GLY LEU GLN SEQRES 2 D 175 GLY GLY ILE VAL GLU ILE ALA SER VAL ASP VAL ILE ASP SEQRES 3 D 175 GLY LYS ILE VAL ASN PRO MSE SER HIS LEU VAL ARG PRO SEQRES 4 D 175 ASP ARG PRO ILE SER PRO GLN ALA MSE ALA ILE HIS ARG SEQRES 5 D 175 ILE THR GLU ALA MSE VAL ALA ASP LYS PRO TRP ILE GLU SEQRES 6 D 175 ASP VAL ILE PRO HIS TYR TYR GLY SER GLU TRP TYR VAL SEQRES 7 D 175 ALA HIS ASN ALA SER PHE ASP ARG ARG VAL LEU PRO GLU SEQRES 8 D 175 MSE PRO GLY GLU TRP ILE CYS THR MSE LYS LEU ALA ARG SEQRES 9 D 175 ARG LEU TRP PRO GLY ILE LYS TYR SER ASN MSE ALA LEU SEQRES 10 D 175 TYR LYS THR ARG LYS LEU ASN VAL GLN THR PRO PRO GLY SEQRES 11 D 175 LEU HIS HIS HIS ARG ALA LEU TYR ASP CYS TYR ILE THR SEQRES 12 D 175 ALA ALA LEU LEU ILE ASP ILE MSE ASN THR SER GLY TRP SEQRES 13 D 175 THR ALA GLU GLN MSE ALA ASP ILE THR GLY ARG LEU GLU SEQRES 14 D 175 HIS HIS HIS HIS HIS HIS MODRES 4FZX MSE C 1 MET SELENOMETHIONINE MODRES 4FZX MSE C 33 MET SELENOMETHIONINE MODRES 4FZX MSE C 48 MET SELENOMETHIONINE MODRES 4FZX MSE C 57 MET SELENOMETHIONINE MODRES 4FZX MSE C 92 MET SELENOMETHIONINE MODRES 4FZX MSE C 100 MET SELENOMETHIONINE MODRES 4FZX MSE C 115 MET SELENOMETHIONINE MODRES 4FZX MSE C 151 MET SELENOMETHIONINE MODRES 4FZX MSE C 161 MET SELENOMETHIONINE MODRES 4FZX MSE D 1 MET SELENOMETHIONINE MODRES 4FZX MSE D 33 MET SELENOMETHIONINE MODRES 4FZX MSE D 48 MET SELENOMETHIONINE MODRES 4FZX MSE D 57 MET SELENOMETHIONINE MODRES 4FZX MSE D 92 MET SELENOMETHIONINE MODRES 4FZX MSE D 100 MET SELENOMETHIONINE MODRES 4FZX MSE D 115 MET SELENOMETHIONINE MODRES 4FZX MSE D 151 MET SELENOMETHIONINE MODRES 4FZX MSE D 161 MET SELENOMETHIONINE HET MSE C 1 8 HET MSE C 33 8 HET MSE C 48 8 HET MSE C 57 8 HET MSE C 92 8 HET MSE C 100 8 HET MSE C 115 8 HET MSE C 151 8 HET MSE C 161 8 HET MSE D 1 8 HET MSE D 33 8 HET MSE D 48 8 HET MSE D 57 8 HET MSE D 92 8 HET MSE D 100 8 HET MSE D 115 8 HET MSE D 151 8 HET MSE D 161 8 HET NA B 101 1 HET NA A 101 1 HET NA C 201 1 HET NA D 201 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 3 MSE 18(C5 H11 N O2 SE) FORMUL 5 NA 4(NA 1+) FORMUL 9 HOH *149(H2 O) HELIX 1 1 SER C 44 ARG C 52 1 9 HELIX 2 2 THR C 54 ALA C 59 1 6 HELIX 3 3 TRP C 63 ILE C 68 1 6 HELIX 4 4 PRO C 69 TYR C 72 5 4 HELIX 5 5 ASN C 81 LEU C 89 1 9 HELIX 6 6 THR C 99 TRP C 107 1 9 HELIX 7 7 SER C 113 ARG C 121 1 9 HELIX 8 8 ARG C 135 GLY C 155 1 21 HELIX 9 9 THR C 157 GLY C 166 1 10 HELIX 10 10 SER D 44 ARG D 52 1 9 HELIX 11 11 THR D 54 ALA D 59 1 6 HELIX 12 12 TRP D 63 ILE D 68 1 6 HELIX 13 13 PRO D 69 TYR D 72 5 4 HELIX 14 14 ALA D 82 LEU D 89 1 8 HELIX 15 15 THR D 99 TRP D 107 1 9 HELIX 16 16 SER D 113 ARG D 121 1 9 HELIX 17 17 ARG D 135 GLY D 155 1 21 HELIX 18 18 THR D 157 GLY D 166 1 10 SHEET 1 A 5 LYS C 28 LEU C 36 0 SHEET 2 A 5 ILE C 16 ILE C 25 -1 N ILE C 19 O HIS C 35 SHEET 3 A 5 LEU C 2 THR C 9 -1 N ILE C 4 O VAL C 22 SHEET 4 A 5 TRP C 76 ALA C 79 1 O VAL C 78 N ILE C 5 SHEET 5 A 5 GLU C 95 CYS C 98 1 O GLU C 95 N TYR C 77 SHEET 1 B 5 LYS D 28 LEU D 36 0 SHEET 2 B 5 ILE D 16 ILE D 25 -1 N ILE D 25 O LYS D 28 SHEET 3 B 5 LEU D 2 THR D 9 -1 N ILE D 4 O VAL D 22 SHEET 4 B 5 TRP D 76 ALA D 79 1 O VAL D 78 N ARG D 3 SHEET 5 B 5 GLU D 95 CYS D 98 1 O GLU D 95 N TYR D 77 LINK C MSE C 1 N LEU C 2 1555 1555 1.33 LINK C PRO C 32 N MSE C 33 1555 1555 1.32 LINK C MSE C 33 N SER C 34 1555 1555 1.33 LINK C ALA C 47 N MSE C 48 1555 1555 1.32 LINK C MSE C 48 N ALA C 49 1555 1555 1.33 LINK C ALA C 56 N MSE C 57 1555 1555 1.33 LINK C MSE C 57 N VAL C 58 1555 1555 1.33 LINK C GLU C 91 N MSE C 92 1555 1555 1.33 LINK C MSE C 92 N PRO C 93 1555 1555 1.35 LINK C THR C 99 N MSE C 100 1555 1555 1.32 LINK C MSE C 100 N LYS C 101 1555 1555 1.32 LINK C ASN C 114 N MSE C 115 1555 1555 1.34 LINK C MSE C 115 N ALA C 116 1555 1555 1.33 LINK C ILE C 150 N MSE C 151 1555 1555 1.34 LINK C MSE C 151 N ASN C 152 1555 1555 1.33 LINK C GLN C 160 N MSE C 161 1555 1555 1.33 LINK C MSE C 161 N ALA C 162 1555 1555 1.34 LINK C MSE D 1 N LEU D 2 1555 1555 1.33 LINK C PRO D 32 N MSE D 33 1555 1555 1.33 LINK C MSE D 33 N SER D 34 1555 1555 1.32 LINK C ALA D 47 N MSE D 48 1555 1555 1.33 LINK C MSE D 48 N ALA D 49 1555 1555 1.33 LINK C ALA D 56 N MSE D 57 1555 1555 1.33 LINK C MSE D 57 N VAL D 58 1555 1555 1.33 LINK C GLU D 91 N MSE D 92 1555 1555 1.33 LINK C MSE D 92 N PRO D 93 1555 1555 1.35 LINK C THR D 99 N MSE D 100 1555 1555 1.33 LINK C MSE D 100 N LYS D 101 1555 1555 1.34 LINK C ASN D 114 N MSE D 115 1555 1555 1.33 LINK C MSE D 115 N ALA D 116 1555 1555 1.33 LINK C ILE D 150 N MSE D 151 1555 1555 1.33 LINK C MSE D 151 N ASN D 152 1555 1555 1.33 LINK C GLN D 160 N MSE D 161 1555 1555 1.33 LINK C MSE D 161 N ALA D 162 1555 1555 1.33 LINK OD2 ASP C 139 NA NA C 201 1555 1555 2.22 LINK OE2 GLU C 8 NA NA C 201 1555 1555 2.25 LINK OP1 DG B 17 NA NA C 201 1555 1555 2.32 LINK OD2 ASP D 139 NA NA D 201 1555 1555 2.34 LINK OP1 DT A 17 NA NA D 201 1555 1555 2.34 LINK OP1 DT A 17 NA NA A 101 1555 1555 2.38 LINK OD1 ASP C 6 NA NA B 101 1555 1555 2.42 LINK OP1 DG B 17 NA NA B 101 1555 1555 2.46 LINK OE2 GLU D 8 NA NA D 201 1555 1555 2.49 LINK O3' DC A 16 NA NA A 101 1555 1555 2.72 LINK OD1 ASP D 6 NA NA A 101 1555 1555 2.81 LINK O3' DA B 16 NA NA B 101 1555 1555 2.87 LINK OD1 ASP D 6 NA NA D 201 1555 1555 2.88 LINK OD2 ASP C 6 NA NA C 201 1555 1555 2.90 LINK OD2 ASP D 6 NA NA D 201 1555 1555 3.00 LINK OD1 ASP C 6 NA NA C 201 1555 1555 3.00 LINK NA NA A 101 O HOH D 360 1555 1555 2.07 LINK NA NA B 101 O HOH C 376 1555 1555 2.16 LINK NA NA A 101 O HOH D 307 1555 1555 2.27 LINK NA NA B 101 O HOH C 308 1555 1555 2.34 LINK NA NA A 101 O HOH A 204 1555 1555 2.52 LINK NA NA B 101 O HOH C 377 1555 1555 2.52 LINK NA NA C 201 O HOH C 378 1555 1555 2.60 LINK NA NA D 201 O HOH D 363 1555 1555 3.11 SITE 1 AC1 7 DA B 16 DG B 17 ASP C 6 NA C 201 SITE 2 AC1 7 HOH C 308 HOH C 376 HOH C 377 SITE 1 AC2 6 DC A 16 DT A 17 HOH A 204 ASP D 6 SITE 2 AC2 6 HOH D 307 HOH D 360 SITE 1 AC3 6 DG B 17 NA B 101 ASP C 6 GLU C 8 SITE 2 AC3 6 ASP C 139 HOH C 378 SITE 1 AC4 4 DT A 17 ASP D 6 GLU D 8 ASP D 139 CRYST1 33.475 107.927 117.124 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008538 0.00000