PDB Short entry for 4GBM HEADER TRANSFERASE 27-JUL-12 4GBM TITLE SULFOTRANSFERASE DOMAIN FROM THE CURACIN BIOSYNTHETIC PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CURM SULFOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SULFOTRANSFERASE DOMAIN (UNP RESIDUES 1598-1917); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOOREA PRODUCTA; SOURCE 3 ORGANISM_TAXID: 1155739; SOURCE 4 GENE: CURM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 10 OTHER_DETAILS: THE ORIGINAL NAME OF THE ORGANISM WAS LYNGBYA SOURCE 11 MAJUSCULA WHICH WAS INITIALLY NAMED MOOREA PRODUCTA BUT HAS BEEN SOURCE 12 CHANGED TO MOOREA PRODUCENS KEYWDS SULFOTRANSFERASE, POLYKETIDE SYNTHASE, CURACIN, PAP, PAPS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.G.MCCARTHY,J.L.SMITH REVDAT 3 28-FEB-24 4GBM 1 REMARK SEQADV LINK REVDAT 2 02-JAN-13 4GBM 1 JRNL REVDAT 1 17-OCT-12 4GBM 0 JRNL AUTH J.G.MCCARTHY,E.B.EISMAN,S.KULKARNI,L.GERWICK,W.H.GERWICK, JRNL AUTH 2 P.WIPF,D.H.SHERMAN,J.L.SMITH JRNL TITL STRUCTURAL BASIS OF FUNCTIONAL GROUP ACTIVATION BY JRNL TITL 2 SULFOTRANSFERASES IN COMPLEX METABOLIC PATHWAYS. JRNL REF ACS CHEM.BIOL. V. 7 1994 2012 JRNL REFN ISSN 1554-8929 JRNL PMID 22991895 JRNL DOI 10.1021/CB300385M REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 46772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 4316 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 306 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2275 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.123 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2468 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3327 ; 1.128 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 301 ; 4.693 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;34.202 ;24.602 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 444 ;11.750 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.864 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1821 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1451 ; 0.784 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2367 ; 1.446 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1017 ; 2.599 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 950 ; 4.094 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 41.2870 19.0020 43.3170 REMARK 3 T TENSOR REMARK 3 T11: 0.0488 T22: 0.0468 REMARK 3 T33: 0.0755 T12: -0.0033 REMARK 3 T13: -0.0060 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.0591 L22: 0.8186 REMARK 3 L33: 1.1308 L12: 0.1408 REMARK 3 L13: 0.5713 L23: 0.0687 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.0768 S13: 0.0621 REMARK 3 S21: 0.1065 S22: -0.0482 S23: -0.0658 REMARK 3 S31: -0.0091 S32: 0.0640 S33: 0.0258 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 36.5490 18.4640 56.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.2594 REMARK 3 T33: 0.1459 T12: -0.0343 REMARK 3 T13: -0.0097 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 3.0620 L22: 1.1463 REMARK 3 L33: 3.3920 L12: 1.9943 REMARK 3 L13: 0.8977 L23: 0.9470 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: -0.3853 S13: 0.0379 REMARK 3 S21: 0.0658 S22: -0.1064 S23: 0.1332 REMARK 3 S31: 0.2097 S32: -0.1714 S33: 0.0496 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 39.4430 22.8250 45.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.0768 T22: 0.0534 REMARK 3 T33: 0.0972 T12: -0.0011 REMARK 3 T13: -0.0030 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.0423 L22: 0.6358 REMARK 3 L33: 1.0806 L12: 0.2374 REMARK 3 L13: 0.6788 L23: 0.2725 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: -0.1168 S13: 0.0665 REMARK 3 S21: 0.1048 S22: -0.0170 S23: 0.0043 REMARK 3 S31: -0.0116 S32: -0.0027 S33: -0.0181 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4190 26.0800 42.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.2325 REMARK 3 T33: 0.3867 T12: 0.0754 REMARK 3 T13: 0.1298 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 13.1502 L22: 32.4205 REMARK 3 L33: 11.2122 L12: 4.9818 REMARK 3 L13: -3.5336 L23: -4.5103 REMARK 3 S TENSOR REMARK 3 S11: 0.4061 S12: -0.0299 S13: 1.2440 REMARK 3 S21: 1.0021 S22: -0.0419 S23: 1.7743 REMARK 3 S31: -0.9605 S32: -0.6548 S33: -0.3641 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1880 17.2180 31.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.0592 T22: 0.0546 REMARK 3 T33: 0.0955 T12: 0.0007 REMARK 3 T13: 0.0016 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.7904 L22: 0.9671 REMARK 3 L33: 0.5552 L12: -0.0950 REMARK 3 L13: 0.0905 L23: -0.1371 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.0727 S13: -0.0057 REMARK 3 S21: -0.0786 S22: -0.0095 S23: -0.0445 REMARK 3 S31: 0.0398 S32: 0.0486 S33: -0.0036 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 250 A 308 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0610 15.2650 32.5090 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0482 REMARK 3 T33: 0.1078 T12: -0.0102 REMARK 3 T13: -0.0271 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.9367 L22: 1.7648 REMARK 3 L33: 0.5114 L12: -0.4811 REMARK 3 L13: -0.0296 L23: -0.2047 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.0007 S13: -0.0191 REMARK 3 S21: -0.0794 S22: -0.0508 S23: 0.1400 REMARK 3 S31: 0.0805 S32: -0.0310 S33: 0.0142 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4GBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000073981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS FOR REMARK 200 VERTICAL AND HORIZONTAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46830 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER, RESOLVE 2.15 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-31% PEG MME 550, 2.5-12.5 MM ZNSO4, REMARK 280 100 MM MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.92800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.00800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.64950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.00800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.92800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.64950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 ILE A 7 REMARK 465 PHE A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 LYS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 PRO A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 ASN A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 ARG A 20 REMARK 465 PRO A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 VAL A 24 REMARK 465 SER A 25 REMARK 465 ASN A 309 REMARK 465 LEU A 310 REMARK 465 VAL A 311 REMARK 465 THR A 312 REMARK 465 THR A 313 REMARK 465 PRO A 314 REMARK 465 THR A 315 REMARK 465 ASN A 316 REMARK 465 GLN A 317 REMARK 465 GLN A 318 REMARK 465 PRO A 319 REMARK 465 GLN A 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 263 -73.02 -125.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 417 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 62 ND1 REMARK 620 2 HOH A 656 O 104.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 83 OE1 REMARK 620 2 GLU A 83 OE2 53.9 REMARK 620 3 HOH A 710 O 123.1 82.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 258 NE2 REMARK 620 2 ASP A 266 OD1 110.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 272 ND1 REMARK 620 2 ASP A 276 OD2 108.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3P A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 418 DBREF 4GBM A 1 320 UNP F4Y423 F4Y423_9CYAN 1598 1917 SEQADV 4GBM SER A -2 UNP F4Y423 EXPRESSION TAG SEQADV 4GBM ASN A -1 UNP F4Y423 EXPRESSION TAG SEQADV 4GBM ALA A 0 UNP F4Y423 EXPRESSION TAG SEQADV 4GBM ALA A 259 UNP F4Y423 GLN 1856 ENGINEERED MUTATION SEQADV 4GBM ALA A 260 UNP F4Y423 LYS 1857 ENGINEERED MUTATION SEQRES 1 A 323 SER ASN ALA SER PRO THR SER LEU GLU ILE PHE ALA THR SEQRES 2 A 323 LYS SER SER PRO SER GLY ASN SER ALA ARG PRO ALA SER SEQRES 3 A 323 VAL SER SER ARG LEU PRO GLY ILE ILE PHE ILE LEU SER SEQRES 4 A 323 SER PRO ARG SER GLY SER THR LEU LEU ARG VAL MET LEU SEQRES 5 A 323 ALA GLY HIS SER SER LEU PHE SER PRO PRO GLU LEU HIS SEQRES 6 A 323 LEU LEU PRO PHE ASN THR MET LYS GLU ARG GLN GLU GLN SEQRES 7 A 323 LEU ASN LEU SER TYR LEU GLY GLU GLY LEU GLN LYS THR SEQRES 8 A 323 PHE MET GLU VAL LYS ASN LEU ASP ALA THR ALA SER GLN SEQRES 9 A 323 ALA LEU ILE LYS ASP LEU GLU SER GLN ASN LEU SER ILE SEQRES 10 A 323 GLN GLN VAL TYR GLY MET LEU GLN GLU ASN ILE ALA PRO SEQRES 11 A 323 ARG LEU LEU VAL ASP LYS SER PRO THR TYR ALA MET GLU SEQRES 12 A 323 PRO THR ILE LEU GLU ARG GLY GLU ALA LEU PHE ALA ASN SEQRES 13 A 323 SER LYS TYR ILE TYR LEU VAL ARG HIS PRO TYR SER VAL SEQRES 14 A 323 ILE GLU SER PHE VAL ARG MET ARG MET GLN LYS LEU VAL SEQRES 15 A 323 GLY LEU GLY GLU GLU ASN PRO TYR ARG VAL ALA GLU GLN SEQRES 16 A 323 VAL TRP ALA LYS SER ASN GLN ASN ILE LEU ASN PHE LEU SEQRES 17 A 323 SER GLN LEU GLU PRO GLU ARG GLN HIS GLN ILE ARG TYR SEQRES 18 A 323 GLU ASP LEU VAL LYS LYS PRO GLN GLN VAL LEU SER GLN SEQRES 19 A 323 LEU CYS ASP PHE LEU ASN VAL PRO PHE GLU PRO GLU LEU SEQRES 20 A 323 LEU GLN PRO TYR GLN GLY ASP ARG MET THR GLY GLY VAL SEQRES 21 A 323 HIS ALA ALA SER LEU SER ILE SER ASP PRO ASN PHE LEU SEQRES 22 A 323 LYS HIS ASN THR ILE ASP GLU SER LEU ALA ASP LYS TRP SEQRES 23 A 323 LYS THR ILE GLN LEU PRO TYR PRO LEU LYS SER GLU THR SEQRES 24 A 323 GLN ARG ILE ALA SER GLN LEU SER TYR GLU LEU PRO ASN SEQRES 25 A 323 LEU VAL THR THR PRO THR ASN GLN GLN PRO GLN HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET A3P A 406 27 HET CL A 407 1 HET CL A 408 1 HET CL A 409 1 HET CL A 410 1 HET CL A 411 1 HET CL A 412 1 HET CL A 413 1 HET CL A 414 1 HET CL A 415 1 HET SO4 A 416 5 HET P6G A 417 18 HET P6G A 418 19 HETNAM ZN ZINC ION HETNAM A3P ADENOSINE-3'-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 2 ZN 5(ZN 2+) FORMUL 7 A3P C10 H15 N5 O10 P2 FORMUL 8 CL 9(CL 1-) FORMUL 17 SO4 O4 S 2- FORMUL 18 P6G 2(C12 H26 O7) FORMUL 20 HOH *365(H2 O) HELIX 1 1 GLY A 41 GLY A 51 1 11 HELIX 2 2 THR A 68 LEU A 76 1 9 HELIX 3 3 GLU A 83 ASN A 94 1 12 HELIX 4 4 ASP A 96 ASN A 111 1 16 HELIX 5 5 SER A 113 ALA A 126 1 14 HELIX 6 6 PRO A 135 MET A 139 5 5 HELIX 7 7 GLU A 140 LEU A 150 1 11 HELIX 8 8 HIS A 162 MET A 173 1 12 HELIX 9 9 ARG A 174 GLY A 180 5 7 HELIX 10 10 ASN A 185 SER A 206 1 22 HELIX 11 11 GLN A 207 LEU A 208 5 2 HELIX 12 12 GLU A 209 GLU A 211 5 3 HELIX 13 13 TYR A 218 LYS A 224 1 7 HELIX 14 14 LYS A 224 ASN A 237 1 14 HELIX 15 15 GLU A 241 GLN A 246 5 6 HELIX 16 16 VAL A 257 LEU A 262 5 6 HELIX 17 17 ASN A 268 HIS A 272 5 5 HELIX 18 18 ASP A 276 THR A 285 5 10 HELIX 19 19 LYS A 293 LEU A 303 1 11 SHEET 1 A 2 LEU A 28 PRO A 29 0 SHEET 2 A 2 PHE A 151 ALA A 152 1 O ALA A 152 N LEU A 28 SHEET 1 B 5 LEU A 55 PHE A 56 0 SHEET 2 B 5 LEU A 129 LYS A 133 1 O VAL A 131 N PHE A 56 SHEET 3 B 5 ILE A 32 SER A 36 1 N ILE A 32 O ASP A 132 SHEET 4 B 5 LYS A 155 VAL A 160 1 O ILE A 157 N PHE A 33 SHEET 5 B 5 GLN A 213 ARG A 217 1 O ILE A 216 N TYR A 158 LINK ND1 HIS A 62 ZN ZN A 405 1555 1555 2.13 LINK OE1 GLU A 83 ZN ZN A 401 1555 1555 2.02 LINK OE2 GLU A 83 ZN ZN A 401 1555 1555 2.66 LINK NE2 HIS A 258 ZN ZN A 402 1555 1555 2.12 LINK OD1 ASP A 266 ZN ZN A 402 1555 1555 2.01 LINK ND1 HIS A 272 ZN ZN A 403 1555 1555 2.11 LINK OD2 ASP A 276 ZN ZN A 403 1555 1555 2.01 LINK ZN ZN A 401 O HOH A 710 1555 1555 2.00 LINK ZN ZN A 404 O5P A3P A 406 1555 1555 2.01 LINK ZN ZN A 405 O HOH A 656 1555 1555 2.14 CISPEP 1 ALA A 126 PRO A 127 0 6.81 SITE 1 AC1 4 GLU A 83 GLU A 123 CL A 414 HOH A 710 SITE 1 AC2 4 HIS A 258 ASP A 266 CL A 407 CL A 411 SITE 1 AC3 4 HIS A 272 ASP A 276 GLU A 295 CL A 413 SITE 1 AC4 4 A3P A 406 CL A 408 CL A 409 CL A 410 SITE 1 AC5 4 HIS A 62 CL A 412 CL A 415 HOH A 656 SITE 1 AC6 26 ARG A 39 SER A 40 GLY A 41 SER A 42 SITE 2 AC6 26 THR A 43 ARG A 161 SER A 169 ARG A 172 SITE 3 AC6 26 TYR A 218 TYR A 248 PRO A 267 ASN A 268 SITE 4 AC6 26 PHE A 269 HIS A 272 THR A 274 ASP A 276 SITE 5 AC6 26 LEU A 279 ZN A 404 CL A 408 CL A 409 SITE 6 AC6 26 CL A 410 HOH A 503 HOH A 505 HOH A 514 SITE 7 AC6 26 HOH A 525 HOH A 743 SITE 1 AC7 7 HIS A 258 ASP A 266 ASN A 268 LEU A 270 SITE 2 AC7 7 LYS A 271 ZN A 402 CL A 411 SITE 1 AC8 7 PRO A 38 ARG A 39 MET A 175 ILE A 264 SITE 2 AC8 7 ZN A 404 A3P A 406 CL A 410 SITE 1 AC9 8 SER A 42 THR A 43 GLU A 60 LYS A 133 SITE 2 AC9 8 PRO A 135 ZN A 404 A3P A 406 CL A 410 SITE 1 BC1 8 ARG A 39 SER A 265 ASP A 266 PRO A 267 SITE 2 BC1 8 ZN A 404 A3P A 406 CL A 408 CL A 409 SITE 1 BC2 6 HIS A 258 ASP A 266 PHE A 269 LEU A 270 SITE 2 BC2 6 ZN A 402 CL A 407 SITE 1 BC3 7 HIS A 62 SER A 134 THR A 136 TYR A 137 SITE 2 BC3 7 ZN A 405 CL A 415 HOH A 531 SITE 1 BC4 6 HIS A 272 ASN A 273 ASP A 276 SER A 294 SITE 2 BC4 6 GLU A 295 ZN A 403 SITE 1 BC5 4 LEU A 81 GLU A 83 GLU A 123 ZN A 401 SITE 1 BC6 4 HIS A 62 LEU A 76 ZN A 405 CL A 412 SITE 1 BC7 8 ARG A 72 GLY A 82 GLU A 83 LEU A 85 SITE 2 BC7 8 GLN A 86 HOH A 659 HOH A 732 HOH A 734 SITE 1 BC8 9 TYR A 158 LEU A 202 GLN A 213 HIS A 214 SITE 2 BC8 9 GLN A 215 GLN A 302 LEU A 303 SER A 304 SITE 3 BC8 9 HOH A 681 SITE 1 BC9 10 SER A 54 PRO A 127 ASN A 153 LYS A 155 SITE 2 BC9 10 VAL A 171 ARG A 174 ASN A 237 HOH A 630 SITE 3 BC9 10 HOH A 631 HOH A 849 CRYST1 45.856 67.299 118.016 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021807 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014859 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008473 0.00000