PDB Short entry for 4GCB HEADER HYDROLASE 30-JUL-12 4GCB TITLE 100K X-RAY DIFFRACTION STUDY OF A 6-FOLD MOLAR EXCESS OF A TITLE 2 CISPLATIN/CARBOPLATIN MIXTURE BINDING TO HEWL COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-147; COMPND 5 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D IV; COMPND 6 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: EGG WHITE KEYWDS CISPLATIN, CARBOPLATIN, HISTIDINE, RELATIVE TOXICITY, BINDING KEYWDS 2 OCCUPANCY, X-RAY RADIATION DAMAGE, RADIATION THERAPY, TEMPERATURE KEYWDS 3 VARIATION AND STRUCTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HELLIWELL,S.W.M.TANLEY REVDAT 4 29-NOV-23 4GCB 1 REMARK REVDAT 3 13-SEP-23 4GCB 1 REMARK LINK REVDAT 2 23-JAN-13 4GCB 1 JRNL REVDAT 1 02-JAN-13 4GCB 0 JRNL AUTH J.R.HELLIWELL,S.W.TANLEY JRNL TITL THE CRYSTAL STRUCTURE ANALYSIS OF THE RELATIVE BINDING OF JRNL TITL 2 CISPLATIN AND CARBOPLATIN IN A MIXTURE WITH HISTIDINE IN A JRNL TITL 3 PROTEIN STUDIED AT 100 AND 300 K WITH REPEATED X-RAY JRNL TITL 4 IRRADIATION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 121 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23275170 JRNL DOI 10.1107/S090744491204423X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 4.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.314 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1038 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 708 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1401 ; 2.153 ; 1.912 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1685 ; 1.148 ; 3.009 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 128 ; 6.487 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;38.125 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 166 ;14.272 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.565 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 147 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1172 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 235 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4GCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MIRROR OPTICS REMARK 200 OPTICS : INCOATEC HELIOS CONFOCAL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM PLUS PLUS REMARK 200 DATA SCALING SOFTWARE : PROTEUM PLUS PLUS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 55.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 113.6 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 78.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 44.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 14.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER MR REMARK 200 STARTING MODEL: PDB ENTRY 2W1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 49 MG HEWL (3.2 MM), 3 MG CISPLATIN REMARK 280 (10 MM), 3.7 MG CARBOPLATIN (10 MM) IN 0.04 M SODIUM ACETATE REMARK 280 BUFFER (462.5 UL) + 10% SODIUM CHLORIDE PRECIPITANT (462.5 UL) + REMARK 280 1 MM DMSO (75 UL), PH 4.7, BATCH, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.49350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.39000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.74025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.39000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.24675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.39000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.74025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.39000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.24675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.49350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 208 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 ND1 REMARK 620 2 CPT A 208 N1 111.5 REMARK 620 3 CPT A 208 CL2 80.4 127.6 REMARK 620 4 CPT A 208 CL1 166.1 80.8 87.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 209 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 CPT A 209 N2 135.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PT A 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DD0 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DD1 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DD2 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DD3 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DD4 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DD6 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DD7 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DD9 RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DDA RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DDB RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4DDC RELATED DB: PDB REMARK 900 STRUCTURAL STUDIES OF THE EFFECT DIMETHYL SULFOXIDE (DMSO) HAS ON REMARK 900 CISPLATIN AND CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN REMARK 900 RELATED ID: 4G49 RELATED DB: PDB REMARK 900 ROOM TEMPERATURE X-RAY DIFFRACTION STUDIES OF CISPLATIN AND REMARK 900 CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN AFTER PROLONGED REMARK 900 CRYSTAL STORAGE REMARK 900 RELATED ID: 4G4A RELATED DB: PDB REMARK 900 ROOM TEMPERATURE X-RAY DIFFRACTION STUDIES OF CISPLATIN AND REMARK 900 CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN AFTER PROLONGED REMARK 900 CRYSTAL STORAGE REMARK 900 RELATED ID: 4G4B RELATED DB: PDB REMARK 900 ROOM TEMPERATURE X-RAY DIFFRACTION STUDIES OF CISPLATIN AND REMARK 900 CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN AFTER PROLONGED REMARK 900 CRYSTAL STORAGE REMARK 900 RELATED ID: 4G4C RELATED DB: PDB REMARK 900 ROOM TEMPERATURE X-RAY DIFFRACTION STUDIES OF CISPLATIN AND REMARK 900 CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN AFTER PROLONGED REMARK 900 CRYSTAL STORAGE REMARK 900 RELATED ID: 4G4H RELATED DB: PDB REMARK 900 ROOM TEMPERATURE X-RAY DIFFRACTION STUDIES OF CISPLATIN AND REMARK 900 CARBOPLATIN BINDING TO HISTIDINE IN A PROTEIN AFTER PROLONGED REMARK 900 CRYSTAL STORAGE REMARK 900 RELATED ID: 4GCC RELATED DB: PDB REMARK 900 RELATED ID: 4GCD RELATED DB: PDB REMARK 900 RELATED ID: 4GCE RELATED DB: PDB REMARK 900 RELATED ID: 4GCF RELATED DB: PDB REMARK 900 RELATED ID: 4GCJ RELATED DB: PDB DBREF 4GCB A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET CL A 201 1 HET DMS A 202 4 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HET CL A 207 1 HET CPT A 208 4 HET CPT A 209 2 HET DMS A 210 4 HET DMS A 211 4 HET CL A 212 1 HET PT A 213 1 HETNAM CL CHLORIDE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM CPT CISPLATIN HETNAM PT PLATINUM (II) ION HETSYN CPT DIAMMINE(DICHLORO)PLATINUM FORMUL 2 CL 7(CL 1-) FORMUL 3 DMS 3(C2 H6 O S) FORMUL 9 CPT 2(CL2 H6 N2 PT) FORMUL 14 PT PT 2+ FORMUL 15 HOH *107(H2 O) HELIX 1 1 GLY A 4 HIS A 15 1 12 HELIX 2 2 ASN A 19 TYR A 23 5 5 HELIX 3 3 SER A 24 ASN A 37 1 14 HELIX 4 4 PRO A 79 SER A 85 5 7 HELIX 5 5 ILE A 88 SER A 100 1 13 HELIX 6 6 ASN A 103 ALA A 107 5 5 HELIX 7 7 TRP A 108 CYS A 115 1 8 HELIX 8 8 ASP A 119 ILE A 124 5 6 SHEET 1 A 3 THR A 43 ARG A 45 0 SHEET 2 A 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 A 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 1.96 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.08 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.06 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.02 LINK NH2 ARG A 14 PT PT A 213 1555 1555 2.45 LINK ND1 HIS A 15 PT1 CPT A 208 1555 1555 2.13 LINK NE2 HIS A 15 PT1 CPT A 209 1555 1555 2.24 SITE 1 AC1 5 ASN A 65 GLY A 67 ARG A 68 THR A 69 SITE 2 AC1 5 SER A 72 SITE 1 AC2 5 GLN A 57 ILE A 58 ASN A 59 TRP A 63 SITE 2 AC2 5 TRP A 108 SITE 1 AC3 3 SER A 24 GLY A 26 GLN A 121 SITE 1 AC4 2 TYR A 23 ASN A 113 SITE 1 AC5 1 PHE A 38 SITE 1 AC6 2 ASN A 65 PRO A 79 SITE 1 AC7 1 ASN A 74 SITE 1 AC8 3 ARG A 14 HIS A 15 ASN A 93 SITE 1 AC9 3 ARG A 14 HIS A 15 CL A 212 SITE 1 BC1 6 ASN A 106 ARG A 112 ASN A 113 LYS A 116 SITE 2 BC1 6 HOH A 306 HOH A 367 SITE 1 BC2 4 ARG A 5 ALA A 122 TRP A 123 HOH A 403 SITE 1 BC3 2 ILE A 88 CPT A 209 SITE 1 BC4 3 ARG A 14 HIS A 15 THR A 89 CRYST1 78.780 78.780 36.987 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027037 0.00000