PDB Short entry for 4GDK HEADER PROTEIN BINDING 31-JUL-12 4GDK TITLE CRYSTAL STRUCTURE OF HUMAN ATG12~ATG5 CONJUGATE IN COMPLEX WITH AN N- TITLE 2 TERMINAL FRAGMENT OF ATG16L1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN ATG12; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: AUTOPHAGY-RELATED PROTEIN 12, APG12-LIKE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AUTOPHAGY PROTEIN 5; COMPND 8 CHAIN: B, E; COMPND 9 SYNONYM: APG5-LIKE, APOPTOSIS-SPECIFIC PROTEIN; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: AUTOPHAGY-RELATED PROTEIN 16-1; COMPND 13 CHAIN: C, F; COMPND 14 SYNONYM: APG16-LIKE 1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APG12, APG12L, ATG12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACYC DUET-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: APG5L, ASP, ATG5; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PACYC DUET-1; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: APG16L, ATG16L1, UNQ9393/PRO34307; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PROTEIN-PROTEIN CONJUGATE, PROTEIN-PROTEIN COMPLEX, UBIQUITIN-LIKE KEYWDS 2 PROTEIN, AUTOPHAGY, E3 LIGASE, UBIQUITIN-LIKE FOLD, STRUCTURAL KEYWDS 3 PROTEIN, ISOPEPTIDE BOND, CYTOPLASM AND AUTOPHAGOSOMAL MEMBRANES, KEYWDS 4 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.OTOMO,Z.METLAGEL,G.TAKAESU,T.OTOMO REVDAT 4 15-NOV-17 4GDK 1 REMARK REVDAT 3 16-JAN-13 4GDK 1 JRNL REVDAT 2 02-JAN-13 4GDK 1 JRNL REVDAT 1 05-DEC-12 4GDK 0 JRNL AUTH C.OTOMO,Z.METLAGEL,G.TAKAESU,T.OTOMO JRNL TITL STRUCTURE OF THE HUMAN ATG12~ATG5 CONJUGATE REQUIRED FOR LC3 JRNL TITL 2 LIPIDATION IN AUTOPHAGY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 59 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 23202584 JRNL DOI 10.1038/NSMB.2431 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.760 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0639 - 6.5006 1.00 2151 156 0.1661 0.1963 REMARK 3 2 6.5006 - 5.1623 1.00 2044 148 0.1667 0.2330 REMARK 3 3 5.1623 - 4.5105 1.00 1999 145 0.1299 0.1970 REMARK 3 4 4.5105 - 4.0984 1.00 2003 144 0.1379 0.2014 REMARK 3 5 4.0984 - 3.8048 1.00 1975 144 0.1614 0.2335 REMARK 3 6 3.8048 - 3.5806 1.00 1963 143 0.1753 0.2476 REMARK 3 7 3.5806 - 3.4014 1.00 1949 141 0.1983 0.2264 REMARK 3 8 3.4014 - 3.2533 1.00 1985 144 0.2083 0.2762 REMARK 3 9 3.2533 - 3.1281 1.00 1927 139 0.2129 0.3120 REMARK 3 10 3.1281 - 3.0202 1.00 1988 145 0.2289 0.2932 REMARK 3 11 3.0202 - 2.9258 1.00 1903 137 0.2343 0.2766 REMARK 3 12 2.9258 - 2.8422 1.00 1963 142 0.2394 0.3327 REMARK 3 13 2.8422 - 2.7674 1.00 1927 140 0.2411 0.3039 REMARK 3 14 2.7674 - 2.6999 0.94 1821 132 0.2435 0.2957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6655 REMARK 3 ANGLE : 0.661 9009 REMARK 3 CHIRALITY : 0.049 960 REMARK 3 PLANARITY : 0.003 1137 REMARK 3 DIHEDRAL : 11.391 2516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 27 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 53:61) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5125 13.8449 18.9204 REMARK 3 T TENSOR REMARK 3 T11: 0.9868 T22: 0.7893 REMARK 3 T33: 0.6569 T12: 0.1994 REMARK 3 T13: -0.0693 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.0341 L22: -0.0254 REMARK 3 L33: -0.0155 L12: -0.0045 REMARK 3 L13: 0.0006 L23: 0.0357 REMARK 3 S TENSOR REMARK 3 S11: -0.5103 S12: 0.6233 S13: 0.7423 REMARK 3 S21: -0.0361 S22: 0.2005 S23: -0.0830 REMARK 3 S31: -0.2888 S32: -0.1581 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 62:71) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7680 2.9203 10.6551 REMARK 3 T TENSOR REMARK 3 T11: 0.8964 T22: 0.9108 REMARK 3 T33: 0.5492 T12: 0.1093 REMARK 3 T13: -0.0126 T23: -0.0987 REMARK 3 L TENSOR REMARK 3 L11: 0.0221 L22: 0.0497 REMARK 3 L33: 0.0235 L12: 0.0684 REMARK 3 L13: 0.0815 L23: 0.0682 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: 0.7893 S13: -0.0219 REMARK 3 S21: 0.1443 S22: -0.1785 S23: -0.0618 REMARK 3 S31: 0.5336 S32: -0.0942 S33: -0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 72:80) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3908 11.9758 22.3126 REMARK 3 T TENSOR REMARK 3 T11: 0.8292 T22: 0.7490 REMARK 3 T33: 0.5769 T12: 0.1080 REMARK 3 T13: -0.0127 T23: 0.0743 REMARK 3 L TENSOR REMARK 3 L11: -0.0113 L22: 0.0440 REMARK 3 L33: 0.0648 L12: -0.0347 REMARK 3 L13: -0.0144 L23: -0.1125 REMARK 3 S TENSOR REMARK 3 S11: 0.1941 S12: 0.1474 S13: 0.1859 REMARK 3 S21: -0.3027 S22: 0.1108 S23: 0.5726 REMARK 3 S31: -0.6101 S32: -0.3147 S33: -0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 81:91) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2966 1.3905 20.2514 REMARK 3 T TENSOR REMARK 3 T11: 0.8433 T22: 0.6501 REMARK 3 T33: 0.3723 T12: -0.0799 REMARK 3 T13: 0.0000 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.0715 L22: 0.0539 REMARK 3 L33: -0.0065 L12: 0.0209 REMARK 3 L13: 0.0167 L23: -0.0114 REMARK 3 S TENSOR REMARK 3 S11: -0.4402 S12: 0.1934 S13: -0.7556 REMARK 3 S21: -0.0995 S22: 0.1192 S23: -0.3472 REMARK 3 S31: -0.0945 S32: -0.1975 S33: 0.0012 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 92:104) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1660 -2.8178 19.8833 REMARK 3 T TENSOR REMARK 3 T11: 0.9614 T22: 0.7624 REMARK 3 T33: 0.5776 T12: 0.0511 REMARK 3 T13: 0.0862 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.0849 L22: 0.0156 REMARK 3 L33: 0.0705 L12: -0.0451 REMARK 3 L13: -0.0423 L23: 0.0268 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: 0.1350 S13: -0.3299 REMARK 3 S21: 0.1898 S22: 0.0824 S23: -0.6686 REMARK 3 S31: 0.6956 S32: 0.4569 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 105:115) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4522 7.3557 28.6212 REMARK 3 T TENSOR REMARK 3 T11: 0.8605 T22: 0.6784 REMARK 3 T33: 0.4275 T12: -0.0285 REMARK 3 T13: 0.1195 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 0.2144 L22: 0.0296 REMARK 3 L33: -0.0041 L12: -0.1390 REMARK 3 L13: 0.0911 L23: -0.1070 REMARK 3 S TENSOR REMARK 3 S11: -0.2305 S12: -0.2485 S13: 1.0198 REMARK 3 S21: -0.1500 S22: 0.3005 S23: -0.2439 REMARK 3 S31: 0.1888 S32: -0.4319 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 116:123) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1179 16.2555 28.4386 REMARK 3 T TENSOR REMARK 3 T11: 0.7447 T22: 0.6919 REMARK 3 T33: 0.6060 T12: 0.1566 REMARK 3 T13: 0.0858 T23: 0.0660 REMARK 3 L TENSOR REMARK 3 L11: 0.0143 L22: 0.0434 REMARK 3 L33: 0.0126 L12: 0.0182 REMARK 3 L13: 0.0057 L23: -0.0268 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: 0.0815 S13: 0.6283 REMARK 3 S21: 0.1120 S22: -0.2119 S23: 0.3407 REMARK 3 S31: 0.0731 S32: 0.3523 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 124:140) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5850 7.8526 19.9282 REMARK 3 T TENSOR REMARK 3 T11: 0.7527 T22: 0.6646 REMARK 3 T33: 0.7505 T12: 0.0432 REMARK 3 T13: 0.0417 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.1493 L22: 0.0449 REMARK 3 L33: 0.1570 L12: -0.0878 REMARK 3 L13: -0.2175 L23: -0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.1349 S12: 0.3931 S13: 0.0409 REMARK 3 S21: -0.3873 S22: 0.0099 S23: 0.0253 REMARK 3 S31: 0.3120 S32: 0.0809 S33: 0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 10:28) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2826 15.0885 61.1666 REMARK 3 T TENSOR REMARK 3 T11: 0.5288 T22: 0.4755 REMARK 3 T33: 0.6728 T12: -0.0026 REMARK 3 T13: -0.0417 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.1870 L22: 0.1416 REMARK 3 L33: 0.0612 L12: 0.0010 REMARK 3 L13: -0.0513 L23: 0.0578 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.3997 S13: 0.1279 REMARK 3 S21: 0.9841 S22: -0.0633 S23: -0.4858 REMARK 3 S31: -0.2704 S32: 0.2874 S33: 0.0002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESSEQ 29:43) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1692 -9.3821 64.5805 REMARK 3 T TENSOR REMARK 3 T11: 0.4449 T22: 0.4056 REMARK 3 T33: 0.5011 T12: 0.1061 REMARK 3 T13: 0.0327 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: -0.0217 L22: 0.0699 REMARK 3 L33: 0.2198 L12: 0.1077 REMARK 3 L13: -0.0907 L23: -0.1166 REMARK 3 S TENSOR REMARK 3 S11: -0.2758 S12: -0.7208 S13: -0.0612 REMARK 3 S21: 0.5100 S22: -0.2067 S23: -0.0810 REMARK 3 S31: 0.0451 S32: 0.2297 S33: -0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 3:90) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6250 -7.1022 50.1627 REMARK 3 T TENSOR REMARK 3 T11: 0.2528 T22: 0.3442 REMARK 3 T33: 0.3708 T12: 0.0039 REMARK 3 T13: 0.0095 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.9565 L22: 2.0892 REMARK 3 L33: 1.1280 L12: 0.2872 REMARK 3 L13: 0.0602 L23: -0.5890 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.0141 S13: -0.0681 REMARK 3 S21: -0.0316 S22: -0.0277 S23: -0.1313 REMARK 3 S31: 0.1263 S32: -0.0087 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 91:137) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9261 -1.0223 41.1325 REMARK 3 T TENSOR REMARK 3 T11: 0.4259 T22: 0.4088 REMARK 3 T33: 0.4299 T12: -0.0032 REMARK 3 T13: 0.0507 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 1.2341 L22: 0.7273 REMARK 3 L33: 1.1116 L12: -1.1065 REMARK 3 L13: 0.4819 L23: 0.2148 REMARK 3 S TENSOR REMARK 3 S11: 0.1560 S12: 0.2498 S13: 0.0245 REMARK 3 S21: -0.1332 S22: -0.0212 S23: 0.1043 REMARK 3 S31: 0.0842 S32: -0.1981 S33: -0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 138:158) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9327 3.7928 34.0264 REMARK 3 T TENSOR REMARK 3 T11: 0.5453 T22: 0.6362 REMARK 3 T33: 0.8231 T12: 0.1645 REMARK 3 T13: 0.2055 T23: -0.0598 REMARK 3 L TENSOR REMARK 3 L11: 0.4078 L22: 0.2279 REMARK 3 L33: 0.3330 L12: 0.2504 REMARK 3 L13: 0.4035 L23: 0.2437 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: 0.3694 S13: -0.6109 REMARK 3 S21: -0.3144 S22: -0.3213 S23: -1.2110 REMARK 3 S31: 0.2501 S32: 0.1253 S33: 0.1414 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 159:173) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5548 5.2553 44.0898 REMARK 3 T TENSOR REMARK 3 T11: 0.3242 T22: 0.5747 REMARK 3 T33: 0.9524 T12: 0.1239 REMARK 3 T13: 0.1577 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 0.2616 L22: 0.2791 REMARK 3 L33: 0.1390 L12: -0.1019 REMARK 3 L13: 0.1319 L23: -0.0848 REMARK 3 S TENSOR REMARK 3 S11: 0.1723 S12: -0.0715 S13: 0.3106 REMARK 3 S21: -0.4909 S22: -0.5772 S23: -0.6661 REMARK 3 S31: -0.2161 S32: 0.6925 S33: -0.2089 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 174:186) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4536 22.5611 36.8463 REMARK 3 T TENSOR REMARK 3 T11: 0.5496 T22: 0.4719 REMARK 3 T33: 0.9126 T12: -0.1090 REMARK 3 T13: 0.2445 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 0.0655 L22: 0.2685 REMARK 3 L33: 0.7353 L12: 0.0688 REMARK 3 L13: 0.0971 L23: 0.4460 REMARK 3 S TENSOR REMARK 3 S11: -0.6936 S12: -0.3228 S13: 0.7814 REMARK 3 S21: -0.5917 S22: -0.4009 S23: -0.3514 REMARK 3 S31: -1.1783 S32: 0.2585 S33: -0.1002 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 187:205) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4432 16.2572 39.8881 REMARK 3 T TENSOR REMARK 3 T11: 0.4254 T22: 0.5177 REMARK 3 T33: 0.6687 T12: -0.0028 REMARK 3 T13: -0.0068 T23: 0.0838 REMARK 3 L TENSOR REMARK 3 L11: 0.1045 L22: 0.2506 REMARK 3 L33: 0.1700 L12: -0.2076 REMARK 3 L13: -0.2278 L23: 0.2836 REMARK 3 S TENSOR REMARK 3 S11: 0.3313 S12: -0.1102 S13: 0.2946 REMARK 3 S21: -0.0470 S22: 0.0426 S23: 0.6096 REMARK 3 S31: -0.1487 S32: -0.4368 S33: -0.0003 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 206:222) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6272 28.5806 43.7118 REMARK 3 T TENSOR REMARK 3 T11: 0.7161 T22: 0.4276 REMARK 3 T33: 0.7805 T12: -0.0707 REMARK 3 T13: 0.0549 T23: 0.1200 REMARK 3 L TENSOR REMARK 3 L11: -0.0063 L22: 0.1199 REMARK 3 L33: -0.0183 L12: -0.0439 REMARK 3 L13: -0.0462 L23: 0.0516 REMARK 3 S TENSOR REMARK 3 S11: -0.3217 S12: 0.7370 S13: 0.4251 REMARK 3 S21: -0.2409 S22: 0.0488 S23: 0.0244 REMARK 3 S31: -0.6538 S32: 0.0867 S33: -0.0013 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 223:275) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5683 16.6448 50.5298 REMARK 3 T TENSOR REMARK 3 T11: 0.4180 T22: 0.3392 REMARK 3 T33: 0.4471 T12: 0.0393 REMARK 3 T13: 0.0587 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4699 L22: 0.5028 REMARK 3 L33: 0.3888 L12: -0.2174 REMARK 3 L13: 0.4904 L23: -0.3984 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: 0.0051 S13: 0.3158 REMARK 3 S21: 0.1059 S22: 0.0257 S23: -0.3587 REMARK 3 S31: -0.0552 S32: 0.0342 S33: -0.0001 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 54:71) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6738 4.1765 120.4149 REMARK 3 T TENSOR REMARK 3 T11: 0.7707 T22: 0.7810 REMARK 3 T33: 0.4653 T12: -0.0906 REMARK 3 T13: -0.1286 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.3226 L22: 0.2848 REMARK 3 L33: 0.3739 L12: -0.1024 REMARK 3 L13: 0.2615 L23: -0.1645 REMARK 3 S TENSOR REMARK 3 S11: -0.1654 S12: -0.3440 S13: -0.5052 REMARK 3 S21: 0.7255 S22: 0.4257 S23: -0.6396 REMARK 3 S31: -0.3476 S32: -0.5238 S33: 0.3224 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 72:80) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1183 9.8466 112.6264 REMARK 3 T TENSOR REMARK 3 T11: 0.6878 T22: 0.9359 REMARK 3 T33: 0.9322 T12: -0.1358 REMARK 3 T13: 0.0290 T23: 0.1212 REMARK 3 L TENSOR REMARK 3 L11: 0.0855 L22: 0.0321 REMARK 3 L33: 0.0087 L12: 0.0754 REMARK 3 L13: 0.0254 L23: 0.0381 REMARK 3 S TENSOR REMARK 3 S11: -0.2195 S12: -0.1811 S13: 1.7367 REMARK 3 S21: 0.5116 S22: -0.6720 S23: -0.8788 REMARK 3 S31: 0.3658 S32: 0.5022 S33: -0.0001 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 81:104) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1312 -3.8726 113.8407 REMARK 3 T TENSOR REMARK 3 T11: 0.9190 T22: 0.7099 REMARK 3 T33: 0.4786 T12: -0.0043 REMARK 3 T13: -0.0528 T23: -0.0918 REMARK 3 L TENSOR REMARK 3 L11: 0.0530 L22: 0.0576 REMARK 3 L33: 0.0641 L12: -0.0816 REMARK 3 L13: 0.0588 L23: -0.1487 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: -0.0709 S13: -0.3438 REMARK 3 S21: -0.0741 S22: -0.0921 S23: 0.2085 REMARK 3 S31: 0.7017 S32: -0.2945 S33: 0.0002 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESSEQ 105:140) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6780 6.8307 109.7554 REMARK 3 T TENSOR REMARK 3 T11: 0.7913 T22: 0.7995 REMARK 3 T33: 0.5305 T12: 0.0044 REMARK 3 T13: -0.0508 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.5956 L22: 0.1921 REMARK 3 L33: 0.2388 L12: -0.1316 REMARK 3 L13: 0.2871 L23: -0.1814 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.1148 S13: 0.1774 REMARK 3 S21: -0.1978 S22: 0.3342 S23: 0.6714 REMARK 3 S31: -0.0886 S32: -0.4494 S33: -0.0000 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'F' AND (RESSEQ 9:27) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9525 13.7662 72.6408 REMARK 3 T TENSOR REMARK 3 T11: 0.7009 T22: 0.7045 REMARK 3 T33: 0.5604 T12: 0.2355 REMARK 3 T13: 0.0610 T23: 0.1151 REMARK 3 L TENSOR REMARK 3 L11: 0.0116 L22: 0.2320 REMARK 3 L33: 0.1846 L12: -0.1149 REMARK 3 L13: 0.0805 L23: -0.1778 REMARK 3 S TENSOR REMARK 3 S11: 0.2612 S12: 0.5999 S13: 0.3740 REMARK 3 S21: -0.4288 S22: -0.2540 S23: -0.3663 REMARK 3 S31: -0.5832 S32: -0.4243 S33: 0.0000 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'F' AND (RESSEQ 28:43) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5044 -9.6373 69.1097 REMARK 3 T TENSOR REMARK 3 T11: 0.6429 T22: 0.3776 REMARK 3 T33: 0.4358 T12: -0.1128 REMARK 3 T13: 0.0696 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4893 L22: 0.1111 REMARK 3 L33: 0.3543 L12: 0.1815 REMARK 3 L13: 0.3424 L23: 0.2501 REMARK 3 S TENSOR REMARK 3 S11: -0.5142 S12: 0.3587 S13: 0.2832 REMARK 3 S21: -0.3042 S22: -0.0660 S23: -0.1193 REMARK 3 S31: 0.7744 S32: -0.9479 S33: -0.1096 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'E' AND (RESSEQ 3:49) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4403 -6.6548 80.5445 REMARK 3 T TENSOR REMARK 3 T11: 0.5287 T22: 0.5007 REMARK 3 T33: 0.4761 T12: 0.0538 REMARK 3 T13: -0.0716 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 0.1206 L22: 0.5118 REMARK 3 L33: 1.1465 L12: 0.0974 REMARK 3 L13: -0.0368 L23: 0.3213 REMARK 3 S TENSOR REMARK 3 S11: -0.0209 S12: -0.1777 S13: -0.2269 REMARK 3 S21: -0.0952 S22: 0.0972 S23: -0.0729 REMARK 3 S31: 0.3512 S32: -0.2525 S33: -0.0016 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'E' AND (RESSEQ 50:137) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9929 -5.7023 90.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.4699 T22: 0.5308 REMARK 3 T33: 0.4153 T12: 0.0133 REMARK 3 T13: -0.0679 T23: 0.0815 REMARK 3 L TENSOR REMARK 3 L11: 1.6258 L22: -0.0754 REMARK 3 L33: 1.2403 L12: -0.1877 REMARK 3 L13: 0.0272 L23: -0.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.0245 S12: -0.4833 S13: -0.1514 REMARK 3 S21: 0.2007 S22: 0.1171 S23: -0.2562 REMARK 3 S31: 0.0176 S32: 0.0107 S33: 0.0004 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'E' AND (RESSEQ 138:274) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6399 11.5738 90.7578 REMARK 3 T TENSOR REMARK 3 T11: 0.4958 T22: 0.4700 REMARK 3 T33: 0.4707 T12: 0.1219 REMARK 3 T13: 0.0231 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 1.2085 L22: 0.6533 REMARK 3 L33: 2.9096 L12: -0.2957 REMARK 3 L13: 0.0513 L23: -0.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.2005 S13: 0.2001 REMARK 3 S21: -0.1034 S22: 0.1570 S23: -0.0404 REMARK 3 S31: -0.3906 S32: -0.5408 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 10 MG/ML IN 0.01M HEPES PH REMARK 280 7.0, 0.3 M NACL, 0.001 M DTT; RESERVOIR: 0.1M HEPES PH7.5, 0.2 M REMARK 280 LITHIUM CITRATE, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.87850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.34250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.57650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.34250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.87850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.57650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THERE IS AN ISOPEPTIDE LINKAGE BETWEEN RESIDUE GLY140 OF ATG12 AND REMARK 400 LYS130 OF ATG5. THE ATG12~ATG5 CONJUGATE WAS GENERATED BY CO- REMARK 400 EXPRESSING ATG12 AND ATG5 FROM PACYC DUET-1 AND ATG7 AND ATG10 FROM REMARK 400 PCDF DUET-1 IN E. COLI. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 50 REMARK 465 SER A 51 REMARK 465 LYS A 52 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 PRO B 229 REMARK 465 GLU B 230 REMARK 465 ASP B 231 REMARK 465 GLY B 232 REMARK 465 GLU B 233 REMARK 465 LYS B 234 REMARK 465 SER C 8 REMARK 465 HIS C 9 REMARK 465 GLY D 50 REMARK 465 SER D 51 REMARK 465 LYS D 52 REMARK 465 LYS D 53 REMARK 465 MET E 1 REMARK 465 THR E 2 REMARK 465 ASP E 228 REMARK 465 PRO E 229 REMARK 465 GLU E 230 REMARK 465 ASP E 231 REMARK 465 GLY E 232 REMARK 465 GLU E 233 REMARK 465 LYS E 234 REMARK 465 ASP E 275 REMARK 465 SER F 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 105 18.73 59.93 REMARK 500 SER A 107 -62.62 -135.44 REMARK 500 SER B 43 -167.51 -107.13 REMARK 500 PHE B 104 -48.36 -136.04 REMARK 500 GLN B 191 115.46 -164.27 REMARK 500 CYS B 223 64.66 -155.93 REMARK 500 SER D 107 -49.41 -143.00 REMARK 500 SER E 43 -162.34 -114.60 REMARK 500 SER E 66 -153.72 -156.64 REMARK 500 PHE E 104 -55.90 -130.12 REMARK 500 SER E 106 69.63 63.55 REMARK 500 CYS E 223 69.73 -155.12 REMARK 500 ALA E 226 11.86 -157.69 REMARK 500 GLN F 28 -70.22 -107.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA E 95 O REMARK 620 2 ASN E 99 OD1 163.6 REMARK 620 3 HOH E 413 O 91.6 86.1 REMARK 620 4 HOH E 407 O 95.3 86.8 172.8 REMARK 620 5 PRO E 97 O 81.5 82.1 84.5 94.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 99 OD1 REMARK 620 2 HOH B 438 O 89.9 REMARK 620 3 PRO B 97 O 92.2 168.1 REMARK 620 4 HOH B 424 O 95.8 86.8 81.3 REMARK 620 5 HOH B 437 O 85.6 104.0 87.9 169.2 REMARK 620 6 ALA B 95 O 173.3 96.4 82.0 86.8 90.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GDL RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE SAME COMPLEX IN A DIFFERENT SPACE GROUP. DBREF 4GDK A 52 140 UNP O94817 ATG12_HUMAN 52 140 DBREF 4GDK B 1 275 UNP Q9H1Y0 ATG5_HUMAN 1 275 DBREF 4GDK C 11 43 UNP Q676U5 A16L1_HUMAN 11 43 DBREF 4GDK D 52 140 UNP O94817 ATG12_HUMAN 52 140 DBREF 4GDK E 1 275 UNP Q9H1Y0 ATG5_HUMAN 1 275 DBREF 4GDK F 11 43 UNP Q676U5 A16L1_HUMAN 11 43 SEQADV 4GDK GLY A 50 UNP O94817 EXPRESSION TAG SEQADV 4GDK SER A 51 UNP O94817 EXPRESSION TAG SEQADV 4GDK SER C 8 UNP Q676U5 EXPRESSION TAG SEQADV 4GDK HIS C 9 UNP Q676U5 EXPRESSION TAG SEQADV 4GDK MET C 10 UNP Q676U5 EXPRESSION TAG SEQADV 4GDK GLY D 50 UNP O94817 EXPRESSION TAG SEQADV 4GDK SER D 51 UNP O94817 EXPRESSION TAG SEQADV 4GDK SER F 8 UNP Q676U5 EXPRESSION TAG SEQADV 4GDK HIS F 9 UNP Q676U5 EXPRESSION TAG SEQADV 4GDK MET F 10 UNP Q676U5 EXPRESSION TAG SEQRES 1 A 91 GLY SER LYS LYS LYS ILE ASP ILE LEU LEU LYS ALA VAL SEQRES 2 A 91 GLY ASP THR PRO ILE MET LYS THR LYS LYS TRP ALA VAL SEQRES 3 A 91 GLU ARG THR ARG THR ILE GLN GLY LEU ILE ASP PHE ILE SEQRES 4 A 91 LYS LYS PHE LEU LYS LEU VAL ALA SER GLU GLN LEU PHE SEQRES 5 A 91 ILE TYR VAL ASN GLN SER PHE ALA PRO SER PRO ASP GLN SEQRES 6 A 91 GLU VAL GLY THR LEU TYR GLU CYS PHE GLY SER ASP GLY SEQRES 7 A 91 LYS LEU VAL LEU HIS TYR CYS LYS SER GLN ALA TRP GLY SEQRES 1 B 275 MET THR ASP ASP LYS ASP VAL LEU ARG ASP VAL TRP PHE SEQRES 2 B 275 GLY ARG ILE PRO THR CYS PHE THR LEU TYR GLN ASP GLU SEQRES 3 B 275 ILE THR GLU ARG GLU ALA GLU PRO TYR TYR LEU LEU LEU SEQRES 4 B 275 PRO ARG VAL SER TYR LEU THR LEU VAL THR ASP LYS VAL SEQRES 5 B 275 LYS LYS HIS PHE GLN LYS VAL MET ARG GLN GLU ASP ILE SEQRES 6 B 275 SER GLU ILE TRP PHE GLU TYR GLU GLY THR PRO LEU LYS SEQRES 7 B 275 TRP HIS TYR PRO ILE GLY LEU LEU PHE ASP LEU LEU ALA SEQRES 8 B 275 SER SER SER ALA LEU PRO TRP ASN ILE THR VAL HIS PHE SEQRES 9 B 275 LYS SER PHE PRO GLU LYS ASP LEU LEU HIS CYS PRO SER SEQRES 10 B 275 LYS ASP ALA ILE GLU ALA HIS PHE MET SER CYS MET LYS SEQRES 11 B 275 GLU ALA ASP ALA LEU LYS HIS LYS SER GLN VAL ILE ASN SEQRES 12 B 275 GLU MET GLN LYS LYS ASP HIS LYS GLN LEU TRP MET GLY SEQRES 13 B 275 LEU GLN ASN ASP ARG PHE ASP GLN PHE TRP ALA ILE ASN SEQRES 14 B 275 ARG LYS LEU MET GLU TYR PRO ALA GLU GLU ASN GLY PHE SEQRES 15 B 275 ARG TYR ILE PRO PHE ARG ILE TYR GLN THR THR THR GLU SEQRES 16 B 275 ARG PRO PHE ILE GLN LYS LEU PHE ARG PRO VAL ALA ALA SEQRES 17 B 275 ASP GLY GLN LEU HIS THR LEU GLY ASP LEU LEU LYS GLU SEQRES 18 B 275 VAL CYS PRO SER ALA ILE ASP PRO GLU ASP GLY GLU LYS SEQRES 19 B 275 LYS ASN GLN VAL MET ILE HIS GLY ILE GLU PRO MET LEU SEQRES 20 B 275 GLU THR PRO LEU GLN TRP LEU SER GLU HIS LEU SER TYR SEQRES 21 B 275 PRO ASP ASN PHE LEU HIS ILE SER ILE ILE PRO GLN PRO SEQRES 22 B 275 THR ASP SEQRES 1 C 36 SER HIS MET PRO ARG TRP LYS ARG HIS ILE SER GLU GLN SEQRES 2 C 36 LEU ARG ARG ARG ASP ARG LEU GLN ARG GLN ALA PHE GLU SEQRES 3 C 36 GLU ILE ILE LEU GLN TYR ASN LYS LEU LEU SEQRES 1 D 91 GLY SER LYS LYS LYS ILE ASP ILE LEU LEU LYS ALA VAL SEQRES 2 D 91 GLY ASP THR PRO ILE MET LYS THR LYS LYS TRP ALA VAL SEQRES 3 D 91 GLU ARG THR ARG THR ILE GLN GLY LEU ILE ASP PHE ILE SEQRES 4 D 91 LYS LYS PHE LEU LYS LEU VAL ALA SER GLU GLN LEU PHE SEQRES 5 D 91 ILE TYR VAL ASN GLN SER PHE ALA PRO SER PRO ASP GLN SEQRES 6 D 91 GLU VAL GLY THR LEU TYR GLU CYS PHE GLY SER ASP GLY SEQRES 7 D 91 LYS LEU VAL LEU HIS TYR CYS LYS SER GLN ALA TRP GLY SEQRES 1 E 275 MET THR ASP ASP LYS ASP VAL LEU ARG ASP VAL TRP PHE SEQRES 2 E 275 GLY ARG ILE PRO THR CYS PHE THR LEU TYR GLN ASP GLU SEQRES 3 E 275 ILE THR GLU ARG GLU ALA GLU PRO TYR TYR LEU LEU LEU SEQRES 4 E 275 PRO ARG VAL SER TYR LEU THR LEU VAL THR ASP LYS VAL SEQRES 5 E 275 LYS LYS HIS PHE GLN LYS VAL MET ARG GLN GLU ASP ILE SEQRES 6 E 275 SER GLU ILE TRP PHE GLU TYR GLU GLY THR PRO LEU LYS SEQRES 7 E 275 TRP HIS TYR PRO ILE GLY LEU LEU PHE ASP LEU LEU ALA SEQRES 8 E 275 SER SER SER ALA LEU PRO TRP ASN ILE THR VAL HIS PHE SEQRES 9 E 275 LYS SER PHE PRO GLU LYS ASP LEU LEU HIS CYS PRO SER SEQRES 10 E 275 LYS ASP ALA ILE GLU ALA HIS PHE MET SER CYS MET LYS SEQRES 11 E 275 GLU ALA ASP ALA LEU LYS HIS LYS SER GLN VAL ILE ASN SEQRES 12 E 275 GLU MET GLN LYS LYS ASP HIS LYS GLN LEU TRP MET GLY SEQRES 13 E 275 LEU GLN ASN ASP ARG PHE ASP GLN PHE TRP ALA ILE ASN SEQRES 14 E 275 ARG LYS LEU MET GLU TYR PRO ALA GLU GLU ASN GLY PHE SEQRES 15 E 275 ARG TYR ILE PRO PHE ARG ILE TYR GLN THR THR THR GLU SEQRES 16 E 275 ARG PRO PHE ILE GLN LYS LEU PHE ARG PRO VAL ALA ALA SEQRES 17 E 275 ASP GLY GLN LEU HIS THR LEU GLY ASP LEU LEU LYS GLU SEQRES 18 E 275 VAL CYS PRO SER ALA ILE ASP PRO GLU ASP GLY GLU LYS SEQRES 19 E 275 LYS ASN GLN VAL MET ILE HIS GLY ILE GLU PRO MET LEU SEQRES 20 E 275 GLU THR PRO LEU GLN TRP LEU SER GLU HIS LEU SER TYR SEQRES 21 E 275 PRO ASP ASN PHE LEU HIS ILE SER ILE ILE PRO GLN PRO SEQRES 22 E 275 THR ASP SEQRES 1 F 36 SER HIS MET PRO ARG TRP LYS ARG HIS ILE SER GLU GLN SEQRES 2 F 36 LEU ARG ARG ARG ASP ARG LEU GLN ARG GLN ALA PHE GLU SEQRES 3 F 36 GLU ILE ILE LEU GLN TYR ASN LYS LEU LEU HET NA B 301 1 HET NA E 301 1 HETNAM NA SODIUM ION FORMUL 7 NA 2(NA 1+) FORMUL 9 HOH *76(H2 O) HELIX 1 1 THR A 80 LEU A 92 1 13 HELIX 2 2 GLU A 115 GLY A 124 1 10 HELIX 3 3 ASP B 4 PHE B 13 1 10 HELIX 4 4 TYR B 44 THR B 49 1 6 HELIX 5 5 THR B 49 LYS B 58 1 10 HELIX 6 6 VAL B 59 MET B 60 5 2 HELIX 7 7 ARG B 61 ILE B 65 5 5 HELIX 8 8 PRO B 82 SER B 92 1 11 HELIX 9 9 SER B 117 LYS B 138 1 22 HELIX 10 10 GLN B 146 ASN B 159 1 14 HELIX 11 11 ARG B 161 ARG B 170 1 10 HELIX 12 12 LYS B 171 GLU B 174 5 4 HELIX 13 13 THR B 214 CYS B 223 1 10 HELIX 14 14 PRO B 224 ILE B 227 5 4 HELIX 15 15 PRO B 250 LEU B 258 1 9 HELIX 16 16 PRO C 11 ARG C 29 1 19 HELIX 17 17 ARG C 29 LEU C 42 1 14 HELIX 18 18 THR D 80 LEU D 92 1 13 HELIX 19 19 GLU D 115 GLY D 124 1 10 HELIX 20 20 ASP E 4 PHE E 13 1 10 HELIX 21 21 TYR E 44 THR E 49 1 6 HELIX 22 22 THR E 49 LYS E 58 1 10 HELIX 23 23 PRO E 82 ALA E 91 1 10 HELIX 24 24 SER E 117 LYS E 138 1 22 HELIX 25 25 SER E 139 GLU E 144 1 6 HELIX 26 26 GLN E 146 ASN E 159 1 14 HELIX 27 27 ARG E 161 ARG E 170 1 10 HELIX 28 28 LYS E 171 GLU E 174 5 4 HELIX 29 29 THR E 214 CYS E 223 1 10 HELIX 30 30 PRO E 250 LEU E 258 1 9 HELIX 31 31 PRO F 11 GLN F 28 1 18 HELIX 32 32 GLN F 28 LEU F 42 1 15 SHEET 1 A 4 LYS A 72 GLU A 76 0 SHEET 2 A 4 LYS A 54 ALA A 61 -1 N ILE A 55 O VAL A 75 SHEET 3 A 4 LYS A 128 CYS A 134 1 O LEU A 129 N ASP A 56 SHEET 4 A 4 PHE A 101 VAL A 104 -1 N PHE A 101 O CYS A 134 SHEET 1 B 5 TYR B 35 PRO B 40 0 SHEET 2 B 5 ARG B 15 LEU B 22 -1 N PHE B 20 O TYR B 35 SHEET 3 B 5 TRP B 98 HIS B 103 1 O TRP B 98 N CYS B 19 SHEET 4 B 5 TRP B 69 TYR B 72 -1 N GLU B 71 O THR B 101 SHEET 5 B 5 THR B 75 PRO B 76 -1 O THR B 75 N TYR B 72 SHEET 1 C 4 PHE B 198 ILE B 199 0 SHEET 2 C 4 PHE B 187 TYR B 190 -1 N ILE B 189 O ILE B 199 SHEET 3 C 4 LEU B 265 PRO B 271 1 O ILE B 267 N TYR B 190 SHEET 4 C 4 ASN B 236 MET B 239 -1 N GLN B 237 O ILE B 270 SHEET 1 D 4 LYS D 72 VAL D 75 0 SHEET 2 D 4 ILE D 55 ALA D 61 -1 N ILE D 57 O TRP D 73 SHEET 3 D 4 LEU D 129 CYS D 134 1 O LEU D 131 N LEU D 58 SHEET 4 D 4 PHE D 101 VAL D 104 -1 N PHE D 101 O CYS D 134 SHEET 1 E 5 TYR E 35 PRO E 40 0 SHEET 2 E 5 ARG E 15 LEU E 22 -1 N PHE E 20 O TYR E 35 SHEET 3 E 5 TRP E 98 HIS E 103 1 O TRP E 98 N CYS E 19 SHEET 4 E 5 TRP E 69 TYR E 72 -1 N TRP E 69 O HIS E 103 SHEET 5 E 5 THR E 75 PRO E 76 -1 O THR E 75 N TYR E 72 SHEET 1 F 3 PHE E 187 GLN E 191 0 SHEET 2 F 3 LEU E 265 PRO E 271 1 O ILE E 267 N TYR E 190 SHEET 3 F 3 ASN E 236 MET E 239 -1 N GLN E 237 O ILE E 270 LINK O ALA E 95 NA NA E 301 1555 1555 2.40 LINK OD1 ASN E 99 NA NA E 301 1555 1555 2.40 LINK OD1 ASN B 99 NA NA B 301 1555 1555 2.42 LINK NA NA B 301 O HOH B 438 1555 1555 2.43 LINK O PRO B 97 NA NA B 301 1555 1555 2.44 LINK NA NA E 301 O HOH E 413 1555 1555 2.44 LINK NA NA B 301 O HOH B 424 1555 1555 2.45 LINK NA NA B 301 O HOH B 437 1555 1555 2.46 LINK O ALA B 95 NA NA B 301 1555 1555 2.46 LINK NA NA E 301 O HOH E 407 1555 1555 2.49 LINK O PRO E 97 NA NA E 301 1555 1555 2.52 LINK C GLY A 140 NZ LYS B 130 1555 1555 1.33 LINK C GLY D 140 NZ LYS E 130 1555 1555 1.33 CISPEP 1 GLY A 63 ASP A 64 0 -1.74 CISPEP 2 LEU B 96 PRO B 97 0 -7.79 CISPEP 3 GLY D 63 ASP D 64 0 -2.64 CISPEP 4 LEU E 96 PRO E 97 0 -5.84 SITE 1 AC1 6 ALA B 95 PRO B 97 ASN B 99 HOH B 424 SITE 2 AC1 6 HOH B 437 HOH B 438 SITE 1 AC2 5 ALA E 95 PRO E 97 ASN E 99 HOH E 407 SITE 2 AC2 5 HOH E 413 CRYST1 43.757 113.153 210.685 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004746 0.00000