PDB Short entry for 4GDX HEADER HYDROLASE 01-AUG-12 4GDX TITLE CRYSTAL STRUCTURE OF HUMAN GAMMA-GLUTAMYL TRANSPEPTIDASE--GLUTAMATE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-GLUTAMYLTRANSPEPTIDASE 1 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GGT 1, GAMMA-GLUTAMYLTRANSFERASE 1, GLUTATHIONE HYDROLASE 1, COMPND 5 LEUKOTRIENE-C4 HYDROLASE; COMPND 6 EC: 2.3.2.2, 3.4.19.13, 3.4.19.14; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GAMMA-GLUTAMYLTRANSPEPTIDASE 1 LIGHT CHAIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: GGT 1, GAMMA-GLUTAMYLTRANSFERASE 1, GLUTATHIONE HYDROLASE 1, COMPND 12 LEUKOTRIENE-C4 HYDROLASE; COMPND 13 EC: 2.3.2.2, 3.4.19.13, 3.4.19.14; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GGT, GGT1; SOURCE 6 EXPRESSION_SYSTEM: PICHIA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4919; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GGT, GGT1; SOURCE 13 EXPRESSION_SYSTEM: PICHIA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 4919 KEYWDS PRODUCT-ENZYME COMPLEX, NTN-HYDROLASE FAMILY, GLYCOPROTEIN, N- KEYWDS 2 GLYCOSYLATION, CELL SURFACE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.B.WEST,Y.CHEN,S.WICKHAM,A.HEROUX,K.CAHILL,M.H.HANIGAN,B.H.M.MOOERS REVDAT 5 13-SEP-23 4GDX 1 HETSYN REVDAT 4 29-JUL-20 4GDX 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 27-NOV-13 4GDX 1 JRNL REVDAT 2 16-OCT-13 4GDX 1 JRNL REVDAT 1 25-SEP-13 4GDX 0 JRNL AUTH M.B.WEST,Y.CHEN,S.WICKHAM,A.HEROUX,K.CAHILL,M.H.HANIGAN, JRNL AUTH 2 B.H.MOOERS JRNL TITL NOVEL INSIGHTS INTO EUKARYOTIC GAMMA-GLUTAMYLTRANSPEPTIDASE JRNL TITL 2 1 FROM THE CRYSTAL STRUCTURE OF THE GLUTAMATE-BOUND HUMAN JRNL TITL 3 ENZYME. JRNL REF J.BIOL.CHEM. V. 288 31902 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24047895 JRNL DOI 10.1074/JBC.M113.498139 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1108) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 70751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0918 - 5.0679 1.00 2902 152 0.1987 0.2034 REMARK 3 2 5.0679 - 4.0232 1.00 2797 134 0.1256 0.1590 REMARK 3 3 4.0232 - 3.5148 1.00 2748 163 0.1272 0.1549 REMARK 3 4 3.5148 - 3.1935 1.00 2767 139 0.1361 0.1443 REMARK 3 5 3.1935 - 2.9647 1.00 2767 118 0.1344 0.1480 REMARK 3 6 2.9647 - 2.7899 1.00 2736 149 0.1267 0.1612 REMARK 3 7 2.7899 - 2.6502 1.00 2711 145 0.1181 0.1455 REMARK 3 8 2.6502 - 2.5348 1.00 2735 139 0.1205 0.1544 REMARK 3 9 2.5348 - 2.4373 1.00 2700 148 0.1261 0.1730 REMARK 3 10 2.4373 - 2.3532 1.00 2709 161 0.1214 0.1673 REMARK 3 11 2.3532 - 2.2796 1.00 2688 150 0.1221 0.1637 REMARK 3 12 2.2796 - 2.2144 1.00 2711 138 0.1238 0.1629 REMARK 3 13 2.2144 - 2.1561 1.00 2725 131 0.1274 0.1584 REMARK 3 14 2.1561 - 2.1035 1.00 2688 143 0.1339 0.1776 REMARK 3 15 2.1035 - 2.0557 1.00 2713 163 0.1425 0.1923 REMARK 3 16 2.0557 - 2.0120 1.00 2687 135 0.1514 0.1833 REMARK 3 17 2.0120 - 1.9717 1.00 2735 151 0.1522 0.1930 REMARK 3 18 1.9717 - 1.9345 1.00 2634 172 0.1578 0.1944 REMARK 3 19 1.9345 - 1.9000 1.00 2663 148 0.1637 0.1953 REMARK 3 20 1.9000 - 1.8678 1.00 2697 141 0.1679 0.1955 REMARK 3 21 1.8678 - 1.8376 0.99 2702 136 0.1769 0.2135 REMARK 3 22 1.8376 - 1.8093 0.98 2593 158 0.1852 0.2074 REMARK 3 23 1.8093 - 1.7827 0.97 2641 134 0.1889 0.2148 REMARK 3 24 1.7827 - 1.7576 0.97 2656 127 0.2068 0.2603 REMARK 3 25 1.7576 - 1.7339 0.96 2582 130 0.2175 0.2427 REMARK 3 26 1.7339 - 1.7114 0.94 2520 143 0.2316 0.2558 REMARK 3 27 1.7114 - 1.6900 0.88 2387 105 0.2436 0.2950 REMARK 3 28 1.6900 - 1.6696 0.80 2116 117 0.2555 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4466 REMARK 3 ANGLE : 1.261 6105 REMARK 3 CHIRALITY : 0.076 704 REMARK 3 PLANARITY : 0.007 802 REMARK 3 DIHEDRAL : 13.072 1633 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : A SI-111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR THAT PROVIDES A REMARK 200 BROAD RANGE 7-15 KEV (0.82-1.8 ) REMARK 200 X-RAYS. THE UNDULATOR BEAM IS REMARK 200 FOCUSED VERTICALLY BY A RH- REMARK 200 COATED MIRROR. REMARK 200 OPTICS : A SI-111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR THAT PROVIDES A REMARK 200 BROAD RANGE 7-15 KEV (0.8 2-1.8 ) REMARK 200 X-RAYS. THE UNDULATOR BEAM IS REMARK 200 FOCUSED VERTICALLY BY A RH- REMARK 200 COATED MIRROR. REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70751 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 47.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : 0.74000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2DBU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17.5% PEG3350, 100 MM AMMONIUM REMARK 280 CHLORIDE, 0.5 MM L-GLUTAMATE, AND 100 MM NA:CACODYLATE PH 6.0 , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.23400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.23400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.76200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.62350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.76200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.62350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.23400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.76200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.62350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.23400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.76200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.62350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 ALA A 12 REMARK 465 VAL A 13 REMARK 465 VAL A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 ILE A 19 REMARK 465 VAL A 20 REMARK 465 GLY A 21 REMARK 465 LEU A 22 REMARK 465 CYS A 23 REMARK 465 LEU A 24 REMARK 465 TRP A 25 REMARK 465 LEU A 26 REMARK 465 PRO A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 THR B 375 REMARK 465 PRO B 376 REMARK 465 ASP B 377 REMARK 465 ASP B 378 REMARK 465 GLY B 379 REMARK 465 GLY B 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 199 CD NE CZ NH1 NH2 REMARK 470 ARG B 549 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 230 C2 NAG A 605 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 199 -3.23 77.46 REMARK 500 ASN A 230 58.48 -160.35 REMARK 500 ASN B 401 -109.62 82.96 REMARK 500 CYS B 454 64.93 -156.77 REMARK 500 THR B 475 -42.25 78.64 REMARK 500 LEU B 508 -56.50 77.54 REMARK 500 HIS B 531 15.87 80.28 REMARK 500 THR B 539 -92.05 -118.16 REMARK 500 ALA B 542 178.61 66.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLU B 1102 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 607 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 O REMARK 620 2 ALA B 556 O 156.4 REMARK 620 3 HOH B1212 O 104.7 98.8 REMARK 620 4 HOH B1230 O 106.8 50.1 144.8 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DBU RELATED DB: PDB REMARK 900 RELATED ID: 2EOY RELATED DB: PDB REMARK 900 RELATED ID: 2EOX RELATED DB: PDB REMARK 900 RELATED ID: 2EOW RELATED DB: PDB REMARK 900 RELATED ID: 2DBX RELATED DB: PDB REMARK 900 RELATED ID: 2NQO RELATED DB: PDB REMARK 900 RELATED ID: 2DG5 RELATED DB: PDB REMARK 900 RELATED ID: 2DBW RELATED DB: PDB REMARK 900 RELATED ID: 4GG2 RELATED DB: PDB REMARK 900 RELATED ID: 4GG3 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE UNP P19440 HAS VAL272 WHEN THIS STRUCTURE HAS ALA272. ALA272 IS REMARK 999 A NATURAL VARIANT ON THIS HUMAN PROTEIN. THE SEQUENCE OF THIS REMARK 999 VARIANT IS GIVEN BY GENBANK AAA52546.1 DBREF 4GDX A 2 374 UNP P19440 GGT1_HUMAN 2 374 DBREF 4GDX B 375 569 UNP P19440 GGT1_HUMAN 375 569 SEQADV 4GDX VAL A 1 UNP P19440 EXPRESSION TAG SEQADV 4GDX ALA A 272 UNP P19440 VAL 272 SEE REMARK 999 SEQRES 1 A 374 VAL LYS LYS LYS LEU VAL VAL LEU GLY LEU LEU ALA VAL SEQRES 2 A 374 VAL LEU VAL LEU VAL ILE VAL GLY LEU CYS LEU TRP LEU SEQRES 3 A 374 PRO SER ALA SER LYS GLU PRO ASP ASN HIS VAL TYR THR SEQRES 4 A 374 ARG ALA ALA VAL ALA ALA ASP ALA LYS GLN CYS SER LYS SEQRES 5 A 374 ILE GLY ARG ASP ALA LEU ARG ASP GLY GLY SER ALA VAL SEQRES 6 A 374 ASP ALA ALA ILE ALA ALA LEU LEU CYS VAL GLY LEU MET SEQRES 7 A 374 ASN ALA HIS SER MET GLY ILE GLY GLY GLY LEU PHE LEU SEQRES 8 A 374 THR ILE TYR ASN SER THR THR ARG LYS ALA GLU VAL ILE SEQRES 9 A 374 ASN ALA ARG GLU VAL ALA PRO ARG LEU ALA PHE ALA THR SEQRES 10 A 374 MET PHE ASN SER SER GLU GLN SER GLN LYS GLY GLY LEU SEQRES 11 A 374 SER VAL ALA VAL PRO GLY GLU ILE ARG GLY TYR GLU LEU SEQRES 12 A 374 ALA HIS GLN ARG HIS GLY ARG LEU PRO TRP ALA ARG LEU SEQRES 13 A 374 PHE GLN PRO SER ILE GLN LEU ALA ARG GLN GLY PHE PRO SEQRES 14 A 374 VAL GLY LYS GLY LEU ALA ALA ALA LEU GLU ASN LYS ARG SEQRES 15 A 374 THR VAL ILE GLU GLN GLN PRO VAL LEU CYS GLU VAL PHE SEQRES 16 A 374 CYS ARG ASP ARG LYS VAL LEU ARG GLU GLY GLU ARG LEU SEQRES 17 A 374 THR LEU PRO GLN LEU ALA ASP THR TYR GLU THR LEU ALA SEQRES 18 A 374 ILE GLU GLY ALA GLN ALA PHE TYR ASN GLY SER LEU THR SEQRES 19 A 374 ALA GLN ILE VAL LYS ASP ILE GLN ALA ALA GLY GLY ILE SEQRES 20 A 374 VAL THR ALA GLU ASP LEU ASN ASN TYR ARG ALA GLU LEU SEQRES 21 A 374 ILE GLU HIS PRO LEU ASN ILE SER LEU GLY ASP ALA VAL SEQRES 22 A 374 LEU TYR MET PRO SER ALA PRO LEU SER GLY PRO VAL LEU SEQRES 23 A 374 ALA LEU ILE LEU ASN ILE LEU LYS GLY TYR ASN PHE SER SEQRES 24 A 374 ARG GLU SER VAL GLU SER PRO GLU GLN LYS GLY LEU THR SEQRES 25 A 374 TYR HIS ARG ILE VAL GLU ALA PHE ARG PHE ALA TYR ALA SEQRES 26 A 374 LYS ARG THR LEU LEU GLY ASP PRO LYS PHE VAL ASP VAL SEQRES 27 A 374 THR GLU VAL VAL ARG ASN MET THR SER GLU PHE PHE ALA SEQRES 28 A 374 ALA GLN LEU ARG ALA GLN ILE SER ASP ASP THR THR HIS SEQRES 29 A 374 PRO ILE SER TYR TYR LYS PRO GLU PHE TYR SEQRES 1 B 195 THR PRO ASP ASP GLY GLY THR ALA HIS LEU SER VAL VAL SEQRES 2 B 195 ALA GLU ASP GLY SER ALA VAL SER ALA THR SER THR ILE SEQRES 3 B 195 ASN LEU TYR PHE GLY SER LYS VAL ARG SER PRO VAL SER SEQRES 4 B 195 GLY ILE LEU PHE ASN ASN GLU MET ASP ASP PHE SER SER SEQRES 5 B 195 PRO SER ILE THR ASN GLU PHE GLY VAL PRO PRO SER PRO SEQRES 6 B 195 ALA ASN PHE ILE GLN PRO GLY LYS GLN PRO LEU SER SER SEQRES 7 B 195 MET CYS PRO THR ILE MET VAL GLY GLN ASP GLY GLN VAL SEQRES 8 B 195 ARG MET VAL VAL GLY ALA ALA GLY GLY THR GLN ILE THR SEQRES 9 B 195 THR ALA THR ALA LEU ALA ILE ILE TYR ASN LEU TRP PHE SEQRES 10 B 195 GLY TYR ASP VAL LYS ARG ALA VAL GLU GLU PRO ARG LEU SEQRES 11 B 195 HIS ASN GLN LEU LEU PRO ASN VAL THR THR VAL GLU ARG SEQRES 12 B 195 ASN ILE ASP GLN ALA VAL THR ALA ALA LEU GLU THR ARG SEQRES 13 B 195 HIS HIS HIS THR GLN ILE ALA SER THR PHE ILE ALA VAL SEQRES 14 B 195 VAL GLN ALA ILE VAL ARG THR ALA GLY GLY TRP ALA ALA SEQRES 15 B 195 ALA SER ASP SER ARG LYS GLY GLY GLU PRO ALA GLY TYR MODRES 4GDX ASN B 511 ASN GLYCOSYLATION SITE MODRES 4GDX ASN A 266 ASN GLYCOSYLATION SITE MODRES 4GDX ASN A 230 ASN GLYCOSYLATION SITE MODRES 4GDX ASN A 120 ASN GLYCOSYLATION SITE MODRES 4GDX ASN A 344 ASN GLYCOSYLATION SITE MODRES 4GDX ASN A 95 ASN GLYCOSYLATION SITE HET NAG A 601 26 HET NAG A 602 27 HET NAG A 603 27 HET NAG A 604 27 HET NAG A 605 27 HET CL A 606 1 HET NA A 607 1 HET NAG B1101 27 HET GLU B1102 5 HET CL B1103 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM GLU GLUTAMIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 8 CL 2(CL 1-) FORMUL 9 NA NA 1+ FORMUL 11 GLU C5 H9 N O4 FORMUL 13 HOH *599(H2 O) HELIX 1 1 ALA A 47 ASP A 60 1 14 HELIX 2 2 SER A 63 ASN A 79 1 17 HELIX 3 3 SER A 121 LYS A 127 1 7 HELIX 4 4 GLY A 128 VAL A 132 5 5 HELIX 5 5 GLY A 136 GLY A 149 1 14 HELIX 6 6 PRO A 152 GLY A 167 1 16 HELIX 7 7 GLY A 171 LYS A 181 1 11 HELIX 8 8 LYS A 181 GLN A 188 1 8 HELIX 9 9 GLN A 188 PHE A 195 1 8 HELIX 10 10 LEU A 210 GLY A 224 1 15 HELIX 11 11 ALA A 225 ASN A 230 1 6 HELIX 12 12 LEU A 233 ALA A 244 1 12 HELIX 13 13 THR A 249 TYR A 256 1 8 HELIX 14 14 SER A 282 GLY A 295 1 14 HELIX 15 15 SER A 299 GLU A 304 5 6 HELIX 16 16 SER A 305 THR A 328 1 24 HELIX 17 17 VAL A 338 THR A 346 1 9 HELIX 18 18 SER A 347 ALA A 356 1 10 HELIX 19 19 PRO A 365 LYS A 370 5 6 HELIX 20 20 ASN B 419 PHE B 424 5 6 HELIX 21 21 SER B 438 PHE B 442 5 5 HELIX 22 22 GLN B 476 TRP B 490 1 15 HELIX 23 23 ASP B 494 GLU B 501 1 8 HELIX 24 24 ASP B 520 ARG B 530 1 11 SHEET 1 A 7 HIS A 36 TYR A 38 0 SHEET 2 A 7 GLY B 553 ALA B 557 -1 O ALA B 556 N HIS A 36 SHEET 3 A 7 VAL B 543 THR B 550 -1 N THR B 550 O GLY B 553 SHEET 4 A 7 VAL B 465 ALA B 472 -1 N VAL B 468 O ILE B 547 SHEET 5 A 7 THR B 456 GLY B 460 -1 N MET B 458 O MET B 467 SHEET 6 A 7 ALA A 272 MET A 276 -1 N TYR A 275 O ILE B 457 SHEET 7 A 7 LEU A 265 LEU A 269 -1 N ILE A 267 O LEU A 274 SHEET 1 B 7 GLU A 259 ILE A 261 0 SHEET 2 B 7 LYS A 100 ALA A 106 -1 N VAL A 103 O ILE A 261 SHEET 3 B 7 GLY A 88 ASN A 95 -1 N ILE A 93 O GLU A 102 SHEET 4 B 7 ALA B 393 THR B 399 -1 O SER B 395 N THR A 92 SHEET 5 B 7 ALA B 382 VAL B 387 -1 N LEU B 384 O ALA B 396 SHEET 6 B 7 ALA A 42 ALA A 44 -1 N ALA A 44 O SER B 385 SHEET 7 B 7 ALA B 567 GLY B 568 -1 O ALA B 567 N VAL A 43 SHEET 1 C 2 PHE A 168 PRO A 169 0 SHEET 2 C 2 ARG A 207 LEU A 208 -1 O LEU A 208 N PHE A 168 SHEET 1 D 2 CYS A 196 ARG A 197 0 SHEET 2 D 2 LYS A 200 VAL A 201 -1 O LYS A 200 N ARG A 197 SHEET 1 E 3 LEU B 504 HIS B 505 0 SHEET 2 E 3 THR B 513 VAL B 515 -1 O THR B 514 N HIS B 505 SHEET 3 E 3 THR B 534 ILE B 536 1 O GLN B 535 N VAL B 515 SSBOND 1 CYS A 50 CYS A 74 1555 1555 2.11 SSBOND 2 CYS A 192 CYS A 196 1555 1555 2.07 LINK ND2 ASN A 95 C1 NAG A 601 1555 1555 1.46 LINK ND2 ASN A 120 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN A 230 C1 NAG A 605 1555 1555 1.44 LINK ND2 ASN A 266 C1 NAG A 604 1555 1555 1.44 LINK ND2 ASN A 344 C1 NAG A 603 1555 1555 1.45 LINK ND2 ASN B 511 C1 NAG B1101 1555 1555 1.43 LINK O ASP A 34 NA NA A 607 1555 1555 2.27 LINK NA NA A 607 O ALA B 556 1555 1555 3.17 LINK NA NA A 607 O HOH B1212 1555 1555 2.71 LINK NA NA A 607 O HOH B1230 1555 1555 2.93 CISPEP 1 ALA A 279 PRO A 280 0 13.59 CISPEP 2 LEU B 509 PRO B 510 0 -0.48 CRYST1 105.524 125.247 104.468 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009572 0.00000