PDB Short entry for 4GUP HEADER IMMUNE SYSTEM 29-AUG-12 4GUP TITLE STRUCTURE OF MHC-CLASS I RELATED MOLECULE MR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I-RELATED GENE COMPND 3 PROTEIN; COMPND 4 CHAIN: A, C; COMPND 5 FRAGMENT: EXTRACELLULAR DOMAIN, RESIDUES 23-292; COMPND 6 SYNONYM: MHC CLASS I-RELATED GENE PROTEIN, CLASS I HISTOCOMPATIBILITY COMPND 7 ANTIGEN-LIKE PROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 12 CHAIN: B, D; COMPND 13 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: B2M; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS MHC CLASS I-RELATED PROTEIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR O.PATEL,J.LE NOURS,J.ROSSJOHN REVDAT 3 05-DEC-12 4GUP 1 JRNL REVDAT 2 24-OCT-12 4GUP 1 JRNL REVDAT 1 17-OCT-12 4GUP 0 JRNL AUTH L.KJER-NIELSEN,O.PATEL,A.J.CORBETT,J.LE NOURS,B.MEEHAN, JRNL AUTH 2 L.LIU,M.BHATI,Z.CHEN,L.KOSTENKO,R.REANTRAGOON, JRNL AUTH 3 N.A.WILLIAMSON,A.W.PURCELL,N.L.DUDEK,M.J.MCCONVILLE, JRNL AUTH 4 R.A.J.O'HAIR,G.N.KHAIRALLAH,D.I.GODFREY,D.P.FAIRLIE, JRNL AUTH 5 J.ROSSJOHN,J.MCCLUSKEY JRNL TITL MR1 PRESENTS MICROBIAL VITAMIN B METABOLITES TO MAIT CELLS JRNL REF NATURE V. 491 717 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23051753 JRNL DOI 10.1038/NATURE11605 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 15334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 764 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.66 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2652 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2240 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2521 REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.3154 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.94 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 131 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5762 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.13800 REMARK 3 B22 (A**2) : 1.20540 REMARK 3 B33 (A**2) : 4.93250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.52 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.875 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.808 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5975 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8150 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2602 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 138 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 868 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5975 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 751 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6241 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.22 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 3.67 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 4.7717 -5.6857 -18.0601 REMARK 3 T TENSOR REMARK 3 T11: -0.0662 T22: -0.0724 REMARK 3 T33: -0.0988 T12: 0.0490 REMARK 3 T13: 0.0092 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.8110 L22: 1.5225 REMARK 3 L33: 0.9757 L12: 0.4018 REMARK 3 L13: 0.0636 L23: -0.6503 REMARK 3 S TENSOR REMARK 3 S11: -0.0814 S12: 0.0040 S13: -0.0432 REMARK 3 S21: -0.0094 S22: 0.0762 S23: 0.0240 REMARK 3 S31: 0.0386 S32: -0.1400 S33: 0.0052 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 20.0959 1.1078 -8.2997 REMARK 3 T TENSOR REMARK 3 T11: -0.1966 T22: -0.0848 REMARK 3 T33: -0.1128 T12: 0.0063 REMARK 3 T13: -0.0731 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 3.6274 L22: 12.8014 REMARK 3 L33: 5.0510 L12: 5.8208 REMARK 3 L13: 1.6173 L23: -0.0338 REMARK 3 S TENSOR REMARK 3 S11: 0.1425 S12: 0.0723 S13: -0.2595 REMARK 3 S21: 0.4553 S22: 0.0806 S23: -0.4162 REMARK 3 S31: -0.0975 S32: 0.2096 S33: -0.2230 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 27.9801 44.9517 -28.1729 REMARK 3 T TENSOR REMARK 3 T11: -0.0853 T22: -0.1190 REMARK 3 T33: -0.1808 T12: 0.0323 REMARK 3 T13: 0.0098 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 1.2880 L22: 1.8578 REMARK 3 L33: 0.3642 L12: 0.4604 REMARK 3 L13: -0.0155 L23: -0.1708 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: 0.0819 S13: 0.0288 REMARK 3 S21: -0.0292 S22: 0.1325 S23: -0.1365 REMARK 3 S31: -0.1258 S32: 0.0238 S33: -0.1048 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 9.1657 41.0395 -19.2629 REMARK 3 T TENSOR REMARK 3 T11: -0.1724 T22: -0.1100 REMARK 3 T33: -0.1200 T12: 0.0215 REMARK 3 T13: -0.0084 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 2.6094 L22: 8.5250 REMARK 3 L33: 4.3693 L12: 0.1485 REMARK 3 L13: -2.0673 L23: 2.4521 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: -0.2489 S13: -0.3411 REMARK 3 S21: -0.1185 S22: -0.0316 S23: -0.0491 REMARK 3 S31: -0.1048 S32: -0.0517 S33: -0.0511 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB074655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95453 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15374 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 89.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.26600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.68600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YDP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M MGCL2, 0.1M HEPES, 22% REMARK 280 POLYACRYLIC ACID 5100 SODIUM SALT, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.57700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.66900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.88850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.66900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.57700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.88850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ARG A 1 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 SER A 251 REMARK 465 ASN A 252 REMARK 465 ASP B 98 REMARK 465 MET B 99 REMARK 465 MET C 0 REMARK 465 ARG C 1 REMARK 465 GLY C 18 REMARK 465 VAL C 19 REMARK 465 GLU C 190 REMARK 465 THR C 191 REMARK 465 PHE C 192 REMARK 465 PRO C 193 REMARK 465 GLY C 194 REMARK 465 VAL C 195 REMARK 465 GLN C 249 REMARK 465 SER C 250 REMARK 465 SER C 251 REMARK 465 MET D 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 6 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 16 CG1 CG2 CD1 REMARK 470 VAL A 19 CG1 CG2 REMARK 470 ASN A 146 CG OD1 ND2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 ILE A 221 CG1 CG2 CD1 REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 ILE B 1 CG1 CG2 CD1 REMARK 470 ARG B 3 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 GLU C 52 CG CD OE1 OE2 REMARK 470 LEU C 101 O REMARK 470 GLU C 102 CG CD OE1 OE2 REMARK 470 LYS C 140 CG CD CE NZ REMARK 470 GLN C 141 CG CD OE1 NE2 REMARK 470 GLU C 144 CG CD OE1 OE2 REMARK 470 GLN C 147 CG CD OE1 NE2 REMARK 470 ARG C 185 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 188 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 189 CG CD CE NZ REMARK 470 LYS C 201 CG CD CE NZ REMARK 470 ILE C 221 CG1 CG2 CD1 REMARK 470 GLN C 223 CG CD OE1 NE2 REMARK 470 LYS D 19 CG CD CE NZ REMARK 470 ASP D 34 CG OD1 OD2 REMARK 470 GLU D 36 CG CD OE1 OE2 REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 GLU D 47 CG CD OE1 OE2 REMARK 470 LYS D 48 CG CD CE NZ REMARK 470 GLU D 50 CG CD OE1 OE2 REMARK 470 PHE D 56 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 58 CG CD CE NZ REMARK 470 ASP D 59 CG OD1 OD2 REMARK 470 GLU D 74 CG CD OE1 OE2 REMARK 470 LYS D 75 CG CD CE NZ REMARK 470 GLU D 77 CG CD OE1 OE2 REMARK 470 LYS D 91 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 13 -78.68 -67.55 REMARK 500 ASP A 14 79.80 -115.32 REMARK 500 HIS A 17 -62.50 -154.07 REMARK 500 ASP A 29 -108.85 64.56 REMARK 500 ASN A 53 -46.04 75.31 REMARK 500 THR A 107 -162.82 -114.89 REMARK 500 GLU A 159 -91.06 -123.38 REMARK 500 ASP A 174 -44.87 -151.18 REMARK 500 HIS A 260 114.94 -163.67 REMARK 500 ASN B 21 -159.30 -154.43 REMARK 500 PRO B 32 -168.52 -77.58 REMARK 500 SER B 57 -179.75 -69.82 REMARK 500 SER C 13 -78.85 -68.26 REMARK 500 ASP C 14 78.94 -115.48 REMARK 500 ASP C 29 -109.04 63.97 REMARK 500 ASN C 53 -44.55 74.55 REMARK 500 THR C 107 -163.70 -115.04 REMARK 500 GLU C 159 -93.34 -119.58 REMARK 500 ASP C 174 -45.08 -150.75 REMARK 500 HIS C 260 112.76 -164.32 REMARK 500 ASN D 21 -158.84 -154.18 REMARK 500 PRO D 32 -167.67 -77.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6FP A 301 REMARK 610 6FP C 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6FP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6FP C 301 DBREF 4GUP A 1 270 UNP Q95460 HMR1_HUMAN 23 292 DBREF 4GUP B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 4GUP C 1 270 UNP Q95460 HMR1_HUMAN 23 292 DBREF 4GUP D 1 99 UNP P61769 B2MG_HUMAN 21 119 SEQADV 4GUP MET A 0 UNP Q95460 EXPRESSION TAG SEQADV 4GUP SER A 261 UNP Q95460 CYS 283 ENGINEERED MUTATION SEQADV 4GUP MET C 0 UNP Q95460 EXPRESSION TAG SEQADV 4GUP SER C 261 UNP Q95460 CYS 283 ENGINEERED MUTATION SEQRES 1 A 271 MET ARG THR HIS SER LEU ARG TYR PHE ARG LEU GLY VAL SEQRES 2 A 271 SER ASP PRO ILE HIS GLY VAL PRO GLU PHE ILE SER VAL SEQRES 3 A 271 GLY TYR VAL ASP SER HIS PRO ILE THR THR TYR ASP SER SEQRES 4 A 271 VAL THR ARG GLN LYS GLU PRO ARG ALA PRO TRP MET ALA SEQRES 5 A 271 GLU ASN LEU ALA PRO ASP HIS TRP GLU ARG TYR THR GLN SEQRES 6 A 271 LEU LEU ARG GLY TRP GLN GLN MET PHE LYS VAL GLU LEU SEQRES 7 A 271 LYS ARG LEU GLN ARG HIS TYR ASN HIS SER GLY SER HIS SEQRES 8 A 271 THR TYR GLN ARG MET ILE GLY CYS GLU LEU LEU GLU ASP SEQRES 9 A 271 GLY SER THR THR GLY PHE LEU GLN TYR ALA TYR ASP GLY SEQRES 10 A 271 GLN ASP PHE LEU ILE PHE ASN LYS ASP THR LEU SER TRP SEQRES 11 A 271 LEU ALA VAL ASP ASN VAL ALA HIS THR ILE LYS GLN ALA SEQRES 12 A 271 TRP GLU ALA ASN GLN HIS GLU LEU LEU TYR GLN LYS ASN SEQRES 13 A 271 TRP LEU GLU GLU GLU CYS ILE ALA TRP LEU LYS ARG PHE SEQRES 14 A 271 LEU GLU TYR GLY LYS ASP THR LEU GLN ARG THR GLU PRO SEQRES 15 A 271 PRO LEU VAL ARG VAL ASN ARG LYS GLU THR PHE PRO GLY SEQRES 16 A 271 VAL THR ALA LEU PHE CYS LYS ALA HIS GLY PHE TYR PRO SEQRES 17 A 271 PRO GLU ILE TYR MET THR TRP MET LYS ASN GLY GLU GLU SEQRES 18 A 271 ILE VAL GLN GLU ILE ASP TYR GLY ASP ILE LEU PRO SER SEQRES 19 A 271 GLY ASP GLY THR TYR GLN ALA TRP ALA SER ILE GLU LEU SEQRES 20 A 271 ASP PRO GLN SER SER ASN LEU TYR SER CYS HIS VAL GLU SEQRES 21 A 271 HIS SER GLY VAL HIS MET VAL LEU GLN VAL PRO SEQRES 1 B 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 B 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 B 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 B 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 271 MET ARG THR HIS SER LEU ARG TYR PHE ARG LEU GLY VAL SEQRES 2 C 271 SER ASP PRO ILE HIS GLY VAL PRO GLU PHE ILE SER VAL SEQRES 3 C 271 GLY TYR VAL ASP SER HIS PRO ILE THR THR TYR ASP SER SEQRES 4 C 271 VAL THR ARG GLN LYS GLU PRO ARG ALA PRO TRP MET ALA SEQRES 5 C 271 GLU ASN LEU ALA PRO ASP HIS TRP GLU ARG TYR THR GLN SEQRES 6 C 271 LEU LEU ARG GLY TRP GLN GLN MET PHE LYS VAL GLU LEU SEQRES 7 C 271 LYS ARG LEU GLN ARG HIS TYR ASN HIS SER GLY SER HIS SEQRES 8 C 271 THR TYR GLN ARG MET ILE GLY CYS GLU LEU LEU GLU ASP SEQRES 9 C 271 GLY SER THR THR GLY PHE LEU GLN TYR ALA TYR ASP GLY SEQRES 10 C 271 GLN ASP PHE LEU ILE PHE ASN LYS ASP THR LEU SER TRP SEQRES 11 C 271 LEU ALA VAL ASP ASN VAL ALA HIS THR ILE LYS GLN ALA SEQRES 12 C 271 TRP GLU ALA ASN GLN HIS GLU LEU LEU TYR GLN LYS ASN SEQRES 13 C 271 TRP LEU GLU GLU GLU CYS ILE ALA TRP LEU LYS ARG PHE SEQRES 14 C 271 LEU GLU TYR GLY LYS ASP THR LEU GLN ARG THR GLU PRO SEQRES 15 C 271 PRO LEU VAL ARG VAL ASN ARG LYS GLU THR PHE PRO GLY SEQRES 16 C 271 VAL THR ALA LEU PHE CYS LYS ALA HIS GLY PHE TYR PRO SEQRES 17 C 271 PRO GLU ILE TYR MET THR TRP MET LYS ASN GLY GLU GLU SEQRES 18 C 271 ILE VAL GLN GLU ILE ASP TYR GLY ASP ILE LEU PRO SER SEQRES 19 C 271 GLY ASP GLY THR TYR GLN ALA TRP ALA SER ILE GLU LEU SEQRES 20 C 271 ASP PRO GLN SER SER ASN LEU TYR SER CYS HIS VAL GLU SEQRES 21 C 271 HIS SER GLY VAL HIS MET VAL LEU GLN VAL PRO SEQRES 1 D 99 ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG HIS SEQRES 2 D 99 PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS TYR SEQRES 3 D 99 VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP LEU SEQRES 4 D 99 LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SER SEQRES 5 D 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 D 99 TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU TYR SEQRES 7 D 99 ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO LYS SEQRES 8 D 99 ILE VAL LYS TRP ASP ARG ASP MET HET 6FP A 301 13 HET CL A 302 1 HET PO4 A 303 5 HET 6FP C 301 13 HETNAM 6FP 2-AMINO-4-OXO-3,4-DIHYDROPTERIDINE-6-CARBALDEHYDE HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETSYN 6FP 6-FORMYLPTERIN FORMUL 5 6FP 2(C7 H5 N5 O2) FORMUL 6 CL CL 1- FORMUL 7 PO4 O4 P 3- HELIX 1 1 ALA A 47 GLU A 52 1 6 HELIX 2 2 ALA A 55 TYR A 84 1 30 HELIX 3 3 ASP A 133 ASN A 146 1 14 HELIX 4 4 ASN A 146 GLU A 159 1 14 HELIX 5 5 GLU A 159 GLU A 170 1 12 HELIX 6 6 ALA C 47 GLU C 52 1 6 HELIX 7 7 ALA C 55 TYR C 84 1 30 HELIX 8 8 ASP C 133 ALA C 142 1 10 HELIX 9 9 ALA C 145 GLU C 159 1 15 HELIX 10 10 GLU C 159 GLU C 170 1 12 SHEET 1 A 8 GLU A 44 PRO A 45 0 SHEET 2 A 8 HIS A 31 ASP A 37 -1 N THR A 35 O GLU A 44 SHEET 3 A 8 PHE A 22 VAL A 28 -1 N SER A 24 O TYR A 36 SHEET 4 A 8 SER A 4 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 A 8 THR A 91 GLU A 99 -1 O TYR A 92 N GLY A 11 SHEET 6 A 8 PHE A 109 TYR A 114 -1 O PHE A 109 N GLY A 97 SHEET 7 A 8 GLN A 117 ASN A 123 -1 O PHE A 122 N LEU A 110 SHEET 8 A 8 SER A 128 ALA A 131 -1 O SER A 128 N ASN A 123 SHEET 1 B 4 LEU A 183 PHE A 192 0 SHEET 2 B 4 VAL A 195 PHE A 205 -1 O VAL A 195 N PHE A 192 SHEET 3 B 4 TYR A 238 GLU A 245 -1 O ALA A 240 N ALA A 202 SHEET 4 B 4 ILE A 225 TYR A 227 -1 N ASP A 226 O SER A 243 SHEET 1 C 4 LEU A 183 PHE A 192 0 SHEET 2 C 4 VAL A 195 PHE A 205 -1 O VAL A 195 N PHE A 192 SHEET 3 C 4 TYR A 238 GLU A 245 -1 O ALA A 240 N ALA A 202 SHEET 4 C 4 LEU A 231 PRO A 232 -1 N LEU A 231 O GLN A 239 SHEET 1 D 8 GLU A 219 GLU A 220 0 SHEET 2 D 8 TYR A 211 LYS A 216 -1 N LYS A 216 O GLU A 219 SHEET 3 D 8 TYR A 254 HIS A 260 -1 O HIS A 257 N THR A 213 SHEET 4 D 8 VAL A 263 GLN A 268 -1 O LEU A 267 N CYS A 256 SHEET 5 D 8 VAL C 263 GLN C 268 -1 O HIS C 264 N GLN A 268 SHEET 6 D 8 TYR C 254 HIS C 260 -1 N CYS C 256 O LEU C 267 SHEET 7 D 8 TYR C 211 LYS C 216 -1 N THR C 213 O HIS C 257 SHEET 8 D 8 GLU C 219 GLU C 220 -1 O GLU C 219 N LYS C 216 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 ASN B 83 -1 O ASN B 83 N GLU B 36 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 H 8 GLU C 44 PRO C 45 0 SHEET 2 H 8 HIS C 31 ASP C 37 -1 N THR C 35 O GLU C 44 SHEET 3 H 8 PHE C 22 VAL C 28 -1 N SER C 24 O TYR C 36 SHEET 4 H 8 SER C 4 VAL C 12 -1 N PHE C 8 O VAL C 25 SHEET 5 H 8 THR C 91 GLU C 99 -1 O TYR C 92 N GLY C 11 SHEET 6 H 8 PHE C 109 TYR C 114 -1 O PHE C 109 N GLY C 97 SHEET 7 H 8 GLN C 117 ASN C 123 -1 O PHE C 122 N LEU C 110 SHEET 8 H 8 SER C 128 ALA C 131 -1 O SER C 128 N ASN C 123 SHEET 1 I 4 LEU C 183 ARG C 188 0 SHEET 2 I 4 ALA C 197 PHE C 205 -1 O LYS C 201 N ARG C 185 SHEET 3 I 4 TYR C 238 GLU C 245 -1 O ALA C 240 N ALA C 202 SHEET 4 I 4 ILE C 225 TYR C 227 -1 N ASP C 226 O SER C 243 SHEET 1 J 4 LEU C 183 ARG C 188 0 SHEET 2 J 4 ALA C 197 PHE C 205 -1 O LYS C 201 N ARG C 185 SHEET 3 J 4 TYR C 238 GLU C 245 -1 O ALA C 240 N ALA C 202 SHEET 4 J 4 LEU C 231 PRO C 232 -1 N LEU C 231 O GLN C 239 SHEET 1 K 4 LYS D 6 SER D 11 0 SHEET 2 K 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 K 4 PHE D 62 PHE D 70 -1 O THR D 68 N LEU D 23 SHEET 4 K 4 GLU D 50 HIS D 51 -1 N GLU D 50 O TYR D 67 SHEET 1 L 4 LYS D 6 SER D 11 0 SHEET 2 L 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 L 4 PHE D 62 PHE D 70 -1 O THR D 68 N LEU D 23 SHEET 4 L 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 M 4 GLU D 44 ARG D 45 0 SHEET 2 M 4 GLU D 36 LYS D 41 -1 N LYS D 41 O GLU D 44 SHEET 3 M 4 TYR D 78 ASN D 83 -1 O ALA D 79 N LEU D 40 SHEET 4 M 4 LYS D 91 LYS D 94 -1 O LYS D 91 N VAL D 82 SSBOND 1 CYS A 98 CYS A 161 1555 1555 2.86 SSBOND 2 CYS A 200 CYS A 256 1555 1555 2.84 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 4 CYS C 98 CYS C 161 1555 1555 2.74 SSBOND 5 CYS C 200 CYS C 256 1555 1555 2.85 SSBOND 6 CYS D 25 CYS D 80 1555 1555 2.03 LINK NZ LYS A 43 C9 6FP A 301 1555 1555 1.36 LINK NZ LYS C 43 C9 6FP C 301 1555 1555 1.35 CISPEP 1 VAL A 19 PRO A 20 0 2.19 CISPEP 2 PRO A 193 GLY A 194 0 -1.39 CISPEP 3 TYR A 206 PRO A 207 0 0.43 CISPEP 4 HIS B 31 PRO B 32 0 3.29 CISPEP 5 TYR C 206 PRO C 207 0 0.99 CISPEP 6 HIS D 31 PRO D 32 0 3.35 SITE 1 AC1 7 TYR A 7 ARG A 9 LYS A 43 TYR A 62 SITE 2 AC1 7 TRP A 69 ARG A 94 ILE A 96 SITE 1 AC2 1 ARG A 94 SITE 1 AC3 3 MET A 72 GLU A 76 GLU A 149 SITE 1 AC4 8 TYR C 7 ARG C 9 LYS C 43 TYR C 62 SITE 2 AC4 8 TRP C 69 ARG C 94 ILE C 96 GLN C 153 CRYST1 59.154 89.777 171.338 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016905 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005836 0.00000