PDB Short entry for 4GVD HEADER SIGNALING PROTEIN 30-AUG-12 4GVD TITLE CRYSTAL STRUCTURE OF T-CELL LYMPHOMA INVASION AND METASTASIS-1 PDZ IN TITLE 2 COMPLEX WITH SYNDECAN1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-LYMPHOMA INVASION AND METASTASIS-INDUCING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PDZ DOMAIN (UNP RESIDUES 841-930); COMPND 5 SYNONYM: TIAM-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SYNDECAN-1; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 303-310; COMPND 11 SYNONYM: SYND1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: HUMAN; SOURCE 6 GENE: TIAM1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET21A-6HIS-RTEV; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS CONFORMATIONAL CHANGE DURING PHOSPHORYLATION, DIFFERENT BINDING KEYWDS 2 POCKET FROM PHOSPHORYLATED SYDENCAN1, SCAFFOLD SIGNALING PROTEIN FOR KEYWDS 3 CELL ADHESION AND CELL JUNCTION, SYDENCAN1 N-TERMINAL THR KEYWDS 4 DANSYLATION, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.LIU,T.R.SHEPHERD,A.M.MURRAY,Z.XU,E.J.FUENTES REVDAT 3 13-SEP-23 4GVD 1 REMARK SEQADV LINK REVDAT 2 27-MAY-15 4GVD 1 JRNL REVDAT 1 13-MAR-13 4GVD 0 JRNL AUTH X.LIU,T.R.SHEPHERD,A.M.MURRAY,Z.XU,E.J.FUENTES JRNL TITL THE STRUCTURE OF THE TIAM1 PDZ DOMAIN/ PHOSPHO-SYNDECAN1 JRNL TITL 2 COMPLEX REVEALS A LIGAND CONFORMATION THAT MODULATES PROTEIN JRNL TITL 3 DYNAMICS. JRNL REF STRUCTURE V. 21 342 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23395182 JRNL DOI 10.1016/J.STR.2013.01.004 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 655 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 905 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1428 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.161 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.956 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1476 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1986 ; 2.289 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 186 ; 6.764 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;43.026 ;23.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 252 ;14.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.696 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1066 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.946 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.91 REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3KZD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 20% PEG8000, PH 6.8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.05300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 851 REMARK 465 ASP A 852 REMARK 465 THR A 853 REMARK 465 ALA A 854 REMARK 465 ASP A 868 REMARK 465 GLY A 869 REMARK 465 LEU A 930 REMARK 465 GLY B 837 REMARK 465 ALA B 838 REMARK 465 MET B 839 REMARK 465 GLU B 929 REMARK 465 LEU B 930 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 856 CG OD1 OD2 REMARK 470 GLU A 866 CG CD OE1 OE2 REMARK 470 ILE A 870 CG1 CG2 CD1 REMARK 470 LYS A 879 CG CD CE NZ REMARK 470 GLU A 880 CG CD OE1 OE2 REMARK 470 GLU A 897 CG CD OE1 OE2 REMARK 470 GLU A 929 CG CD OE1 OE2 REMARK 470 LYS B 841 CG CD CE NZ REMARK 470 GLU B 849 CD OE1 OE2 REMARK 470 GLU B 867 CG CD OE1 OE2 REMARK 470 TYR B 927 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PRO B 928 CG CD REMARK 470 GLN D 3 CG CD OE1 NE2 REMARK 470 GLU D 4 CG CD OE1 OE2 REMARK 470 GLU D 5 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N THR D 1 C1 ANS D 100 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 838 -150.57 -140.37 REMARK 500 THR A 881 -9.64 82.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1136 O REMARK 620 2 HOH B1139 O 92.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANS C 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANS D 100 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KZD RELATED DB: PDB REMARK 900 THE TIAM1 PDZ DOMAIN IN APO STATE REMARK 900 RELATED ID: 3KZE RELATED DB: PDB REMARK 900 THE TIAM1 PDZ DOMAIN COMPLEXED WITH MODEL PEPTIDE REMARK 900 RELATED ID: 4GVC RELATED DB: PDB REMARK 900 THE TIAM1 PDZ DOMAIN COMPLEXED WITH PHOSPHORYLATED SYNDECAN1 PEPTIDE REMARK 999 REMARK 999 SEQUENCE REMARK 999 Q844H IS A NATURAL VARIANT. DBREF 4GVD A 841 930 UNP Q13009 TIAM1_HUMAN 841 930 DBREF 4GVD B 841 930 UNP Q13009 TIAM1_HUMAN 841 930 DBREF 4GVD C 1 8 UNP P18827 SDC1_HUMAN 303 310 DBREF 4GVD D 1 8 UNP P18827 SDC1_HUMAN 303 310 SEQADV 4GVD GLY A 837 UNP Q13009 EXPRESSION TAG SEQADV 4GVD ALA A 838 UNP Q13009 EXPRESSION TAG SEQADV 4GVD MET A 839 UNP Q13009 EXPRESSION TAG SEQADV 4GVD GLY A 840 UNP Q13009 EXPRESSION TAG SEQADV 4GVD HIS A 844 UNP Q13009 GLN 844 SEE REMARK 999 SEQADV 4GVD GLY B 837 UNP Q13009 EXPRESSION TAG SEQADV 4GVD ALA B 838 UNP Q13009 EXPRESSION TAG SEQADV 4GVD MET B 839 UNP Q13009 EXPRESSION TAG SEQADV 4GVD GLY B 840 UNP Q13009 EXPRESSION TAG SEQADV 4GVD HIS B 844 UNP Q13009 GLN 844 SEE REMARK 999 SEQRES 1 A 94 GLY ALA MET GLY LYS VAL THR HIS SER ILE HIS ILE GLU SEQRES 2 A 94 LYS SER ASP THR ALA ALA ASP THR TYR GLY PHE SER LEU SEQRES 3 A 94 SER SER VAL GLU GLU ASP GLY ILE ARG ARG LEU TYR VAL SEQRES 4 A 94 ASN SER VAL LYS GLU THR GLY LEU ALA SER LYS LYS GLY SEQRES 5 A 94 LEU LYS ALA GLY ASP GLU ILE LEU GLU ILE ASN ASN ARG SEQRES 6 A 94 ALA ALA ASP ALA LEU ASN SER SER MET LEU LYS ASP PHE SEQRES 7 A 94 LEU SER GLN PRO SER LEU GLY LEU LEU VAL ARG THR TYR SEQRES 8 A 94 PRO GLU LEU SEQRES 1 B 94 GLY ALA MET GLY LYS VAL THR HIS SER ILE HIS ILE GLU SEQRES 2 B 94 LYS SER ASP THR ALA ALA ASP THR TYR GLY PHE SER LEU SEQRES 3 B 94 SER SER VAL GLU GLU ASP GLY ILE ARG ARG LEU TYR VAL SEQRES 4 B 94 ASN SER VAL LYS GLU THR GLY LEU ALA SER LYS LYS GLY SEQRES 5 B 94 LEU LYS ALA GLY ASP GLU ILE LEU GLU ILE ASN ASN ARG SEQRES 6 B 94 ALA ALA ASP ALA LEU ASN SER SER MET LEU LYS ASP PHE SEQRES 7 B 94 LEU SER GLN PRO SER LEU GLY LEU LEU VAL ARG THR TYR SEQRES 8 B 94 PRO GLU LEU SEQRES 1 C 8 THR LYS GLN GLU GLU PHE TYR ALA SEQRES 1 D 8 THR LYS GLN GLU GLU PHE TYR ALA HET CL A1001 1 HET NA A1002 1 HET CL A1003 1 HET NA B1001 1 HET CL B1002 1 HET ANS C 100 16 HET ANS D 100 16 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM ANS 5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL HETNAM 2 ANS ACID) HETSYN ANS DANSYL ACID FORMUL 5 CL 3(CL 1-) FORMUL 6 NA 2(NA 1+) FORMUL 10 ANS 2(C12 H13 N O3 S) FORMUL 12 HOH *101(H2 O) HELIX 1 1 GLY A 882 LYS A 887 1 6 HELIX 2 2 ASN A 907 GLN A 917 1 11 HELIX 3 3 GLY B 882 LYS B 887 1 6 HELIX 4 4 ASP B 904 LEU B 906 5 3 HELIX 5 5 ASN B 907 SER B 916 1 10 SHEET 1 A 9 ARG A 901 ALA A 902 0 SHEET 2 A 9 GLU A 894 ILE A 898 -1 N ILE A 898 O ARG A 901 SHEET 3 A 9 SER A 919 ARG A 925 -1 O ARG A 925 N GLU A 894 SHEET 4 A 9 THR A 843 GLU A 849 -1 N ILE A 848 O LEU A 920 SHEET 5 A 9 GLN C 3 ALA C 8 -1 O GLU C 5 N SER A 845 SHEET 6 A 9 PHE B 860 GLU B 867 -1 N SER B 864 O GLN C 3 SHEET 7 A 9 ILE B 870 VAL B 878 -1 O ASN B 876 N SER B 861 SHEET 8 A 9 GLU B 894 ILE B 898 -1 O ILE B 895 N LEU B 873 SHEET 9 A 9 ARG B 901 ALA B 902 -1 O ARG B 901 N ILE B 898 SHEET 1 B12 VAL B 842 GLU B 849 0 SHEET 2 B12 SER B 919 THR B 926 -1 O VAL B 924 N HIS B 844 SHEET 3 B12 GLU B 894 ILE B 898 -1 N LEU B 896 O LEU B 923 SHEET 4 B12 ILE B 870 VAL B 878 -1 N LEU B 873 O ILE B 895 SHEET 5 B12 PHE B 860 GLU B 867 -1 N SER B 861 O ASN B 876 SHEET 6 B12 GLN C 3 ALA C 8 -1 O GLN C 3 N SER B 864 SHEET 7 B12 THR A 843 GLU A 849 -1 N SER A 845 O GLU C 5 SHEET 8 B12 SER A 919 ARG A 925 -1 O LEU A 920 N ILE A 848 SHEET 9 B12 GLU A 894 ILE A 898 -1 N GLU A 894 O ARG A 925 SHEET 10 B12 ARG A 872 VAL A 878 -1 N LEU A 873 O ILE A 895 SHEET 11 B12 PHE A 860 VAL A 865 -1 N VAL A 865 O ARG A 872 SHEET 12 B12 LYS D 2 ALA D 8 -1 O GLN D 3 N SER A 864 LINK N THR C 1 S ANS C 100 1555 1555 1.86 LINK N THR D 1 S ANS D 100 1555 1555 1.74 LINK NA NA B1001 O HOH B1136 1555 1555 2.94 LINK NA NA B1001 O HOH B1139 1555 1555 2.84 SITE 1 AC1 1 VAL A 878 SITE 1 AC2 2 MET A 839 CL A1003 SITE 1 AC3 1 NA A1002 SITE 1 AC4 4 PRO B 918 CL B1002 HOH B1136 HOH B1139 SITE 1 AC5 6 SER B 877 VAL B 878 GLN B 917 PRO B 918 SITE 2 AC5 6 NA B1001 HOH B1127 SITE 1 AC6 7 VAL B 865 ASN B 907 SER B 909 MET B 910 SITE 2 AC6 7 PHE B 914 HOH B1124 THR C 1 SITE 1 AC7 7 VAL A 865 ASN A 907 SER A 909 MET A 910 SITE 2 AC7 7 ASP A 913 PHE A 914 THR D 1 CRYST1 26.517 58.106 50.948 90.00 90.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.037712 0.000000 0.000329 0.00000 SCALE2 0.000000 0.017210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019629 0.00000