PDB Short entry for 4GZI HEADER HYDROLASE 06-SEP-12 4GZI TITLE ACTIVE-SITE MUTANT OF POTATO ENDO-1,3-BETA-GLUCANASE IN COMPLEX WITH TITLE 2 LAMINARATRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCAN ENDO-1,3-BETA-D-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATURE ENDO-1,3-BETA-GLUCANASE, UNP RESIDUES 24-338; COMPND 5 SYNONYM: 1,3-BETA-D-GLUCAN GLUCANOHYDROLASE; COMPND 6 EC: 3.2.1.39; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM TUBEROSUM; SOURCE 3 ORGANISM_COMMON: POTATO; SOURCE 4 ORGANISM_TAXID: 4113; SOURCE 5 STRAIN: DESIREE; SOURCE 6 GENE: GLUB20-2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-30A(+) KEYWDS GLUCOSIDE HYDROLASE, GH17 FAMILY, PATHOGENESIS-RELATED CLASS-2 KEYWDS 2 PROTEIN (PR-2), CARBOHYDRATE/SUGAR BINDING, CATALYTIC NUCLEOPHILE KEYWDS 3 MUTATION, LAMINARATRIOSE, TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WOJTKOWIAK,K.WITEK,J.HENNIG,M.JASKOLSKI REVDAT 5 13-SEP-23 4GZI 1 HETSYN REVDAT 4 29-JUL-20 4GZI 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 27-SEP-17 4GZI 1 REMARK REVDAT 2 23-JAN-13 4GZI 1 JRNL REVDAT 1 02-JAN-13 4GZI 0 JRNL AUTH A.WOJTKOWIAK,K.WITEK,J.HENNIG,M.JASKOLSKI JRNL TITL STRUCTURES OF AN ACTIVE-SITE MUTANT OF A PLANT JRNL TITL 2 1,3-BETA-GLUCANASE IN COMPLEX WITH OLIGOSACCHARIDE PRODUCTS JRNL TITL 3 OF HYDROLYSIS JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 52 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 23275163 JRNL DOI 10.1107/S0907444912042175 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.WOJTKOWIAK,K.WITEK,J.HENNIG,M.JASKOLSKI REMARK 1 TITL TWO HIGH-RESOLUTION CRYSTAL STRUCTURES OF POTATO REMARK 1 TITL 2 1,3-BETA-GLUCANASE REVEAL SUBDOMAIN FLEXIBILITY WITH REMARK 1 TITL 3 IMPLICATIONS FOR SUBSTRATE BINDING REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 713 2012 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.N.VARGHESE,T.P.GARRETT,P.M.COLMAN,L.CHEN,P.B.H J, REMARK 1 AUTH 2 G.B.FINCHER REMARK 1 TITL THREE-DIMENSIONAL STRUCTURES OF TWO PLANT BETA-GLUCAN REMARK 1 TITL 2 ENDOHYDROLASES WITH DISTINCT SUBSTRATE SPECIFICITIES. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 91 2785 1994 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 3 REMARK 1 AUTH V.RECEVEUR-BR CHOT,M.CZJZEK,A.BARRE,A.ROUSSEL,W.J.PEUMANS, REMARK 1 AUTH 2 E.J.VAN DAMME,P.ROUG REMARK 1 TITL CRYSTAL STRUCTURE AT 1.45-A RESOLUTION OF THE MAJOR ALLERGEN REMARK 1 TITL 2 ENDO-BETA-1,3-GLUCANASE OF BANANA AS A MOLECULAR BASIS FOR REMARK 1 TITL 3 THE LATEX-FRUIT SYNDROME. REMARK 1 REF PROTEINS V. 63 235 2006 REMARK 1 REFN ISSN 0887-3585 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 33126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : R-FREE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2509 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.947 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2625 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2277 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3571 ; 1.567 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5305 ; 0.884 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 6.233 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;32.250 ;24.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;11.751 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2912 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 522 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 506 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2298 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1326 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1296 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.135 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.116 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2018 ; 1.363 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 634 ; 0.303 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2552 ; 1.550 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1229 ; 2.769 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1019 ; 3.885 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1140 -0.7513 20.4998 REMARK 3 T TENSOR REMARK 3 T11: -0.0133 T22: 0.0032 REMARK 3 T33: -0.0114 T12: -0.0023 REMARK 3 T13: 0.0164 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.5606 L22: 0.8543 REMARK 3 L33: 0.5217 L12: 0.0026 REMARK 3 L13: 0.0345 L23: 0.2234 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: 0.0527 S13: -0.0060 REMARK 3 S21: -0.0378 S22: 0.0003 S23: -0.0327 REMARK 3 S31: -0.0036 S32: 0.0017 S33: -0.0151 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 265 REMARK 3 ORIGIN FOR THE GROUP (A): -25.7748 7.8788 15.5883 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: 0.0206 REMARK 3 T33: 0.0201 T12: 0.0165 REMARK 3 T13: -0.0049 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.8887 L22: 0.9650 REMARK 3 L33: 0.6963 L12: 0.6518 REMARK 3 L13: 0.2575 L23: 0.4520 REMARK 3 S TENSOR REMARK 3 S11: -0.0627 S12: 0.0213 S13: 0.1042 REMARK 3 S21: -0.1044 S22: 0.0001 S23: 0.1140 REMARK 3 S31: -0.0866 S32: -0.0881 S33: 0.0626 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 266 A 338 REMARK 3 ORIGIN FOR THE GROUP (A): -24.0801 -6.5125 9.1642 REMARK 3 T TENSOR REMARK 3 T11: -0.0041 T22: 0.0240 REMARK 3 T33: -0.0268 T12: -0.0083 REMARK 3 T13: 0.0116 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.9470 L22: 1.1065 REMARK 3 L33: 1.3144 L12: -0.0768 REMARK 3 L13: 0.3337 L23: 0.0293 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.1080 S13: -0.0716 REMARK 3 S21: -0.1493 S22: 0.0016 S23: -0.0238 REMARK 3 S31: -0.0306 S32: -0.0122 S33: 0.0203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGEN ATOMS WERE ADDED AT RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.81620 REMARK 200 MONOCHROMATOR : GE(111) TRIANGULAR BENT CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34231 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.26400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3UR7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 0.2 M AMMONIUM REMARK 280 ACETATE, 24% PEG 8000, 0.2 MM LAMINARAHEXOSE, STREAK SEEDING, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.63650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 339 REMARK 465 ASN A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 276 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 276 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 32.36 -145.85 REMARK 500 ILE A 101 -66.60 -109.25 REMARK 500 THR A 158 -166.04 -114.35 REMARK 500 PHE A 181 -63.50 -98.09 REMARK 500 ALA A 259 135.13 -171.75 REMARK 500 HIS A 267 148.60 -171.93 REMARK 500 GLN A 329 -2.60 85.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UR7 RELATED DB: PDB REMARK 900 NATIVE ENDO-1,3-BETA-GLUCANASE REMARK 900 RELATED ID: 3UR8 RELATED DB: PDB REMARK 900 NATIVE ENDO-1,3-BETA-GLUCANASE REMARK 900 RELATED ID: 1GHS RELATED DB: PDB REMARK 900 THE THREE-DIMENSIONAL STRUCTURES OF TWO PLANT BETA-GLUCAN REMARK 900 ENDOHYDROLASES WITH DISTINCT SUBSTRATE SPECIFICITIES REMARK 900 RELATED ID: 2CYG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE AT 1.45- RESOLUTION OF THE MAJOR ALLERGEN ENDO- REMARK 900 BETA-1,3-GLUCANASE OF BANANA AS A MOLECULAR BASIS FOR THE LATEX- REMARK 900 FRUIT SYNDROME REMARK 900 RELATED ID: 3EM5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A NATIVE ENDO BETA-1,3-GLUCANASE (HEV B 2), A REMARK 900 MAJOR ALLERGEN FROM HEVEA BRASILIENSIS REMARK 900 RELATED ID: 3F55 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NATIVE ENDO BETA-1,3-GLUCANASE (HEV B 2), REMARK 900 A MAJOR ALLERGEN FROM HEVEA BRASILIENSIS (SPACE GROUP P41) REMARK 900 RELATED ID: 4GZJ RELATED DB: PDB REMARK 900 ACTIVE-SITE MUTANT OF POTATO ENDO-1,3-BETA-GLUCANASE IN COMPLEX REMARK 900 WITH LAMINARATRIOSE AND LAMINARATETROSE DBREF 4GZI A 24 338 UNP Q70C53 Q70C53_SOLTU 24 338 SEQADV 4GZI ALA A 259 UNP Q70C53 GLU 259 ENGINEERED MUTATION SEQADV 4GZI LEU A 339 UNP Q70C53 EXPRESSION TAG SEQADV 4GZI ASN A 340 UNP Q70C53 EXPRESSION TAG SEQADV 4GZI HIS A 341 UNP Q70C53 EXPRESSION TAG SEQADV 4GZI HIS A 342 UNP Q70C53 EXPRESSION TAG SEQADV 4GZI HIS A 343 UNP Q70C53 EXPRESSION TAG SEQADV 4GZI HIS A 344 UNP Q70C53 EXPRESSION TAG SEQADV 4GZI HIS A 345 UNP Q70C53 EXPRESSION TAG SEQADV 4GZI HIS A 346 UNP Q70C53 EXPRESSION TAG SEQRES 1 A 323 GLN PRO ILE GLY VAL CYS TYR GLY LYS ILE ALA ASN ASN SEQRES 2 A 323 LEU PRO SER ASP GLN ASP VAL ILE LYS LEU TYR ASN ALA SEQRES 3 A 323 ASN ASN ILE LYS LYS MET ARG ILE TYR TYR PRO HIS THR SEQRES 4 A 323 ASN VAL PHE ASN ALA LEU LYS GLY SER ASN ILE GLU ILE SEQRES 5 A 323 ILE LEU ASP VAL PRO ASN GLN ASP LEU GLU ALA LEU ALA SEQRES 6 A 323 ASN PRO SER ASN ALA ASN GLY TRP VAL GLN ASP ASN ILE SEQRES 7 A 323 ARG ASN HIS PHE PRO ASP VAL LYS PHE LYS TYR ILE ALA SEQRES 8 A 323 VAL GLY ASN GLU VAL ASP PRO GLY ARG GLU SER GLY LYS SEQRES 9 A 323 TYR ALA ARG PHE VAL GLY PRO ALA MET GLU ASN ILE TYR SEQRES 10 A 323 ASN ALA LEU SER SER ALA GLY LEU GLN ASN GLN ILE LYS SEQRES 11 A 323 VAL SER THR SER THR TYR SER GLY LEU LEU THR ASN THR SEQRES 12 A 323 TYR PRO PRO ARG ASP SER ILE PHE ARG GLU GLU TYR LYS SEQRES 13 A 323 SER PHE ILE ASN PRO ILE ILE GLY PHE LEU ALA ARG HIS SEQRES 14 A 323 ASN LEU PRO LEU LEU ALA ASN ILE TYR PRO TYR PHE GLY SEQRES 15 A 323 HIS ILE ASP ASN THR ASN ALA VAL PRO LEU SER TYR ALA SEQRES 16 A 323 LEU PHE ASN GLN GLN ARG ARG ASN ASP THR GLY TYR GLN SEQRES 17 A 323 ASN LEU PHE ASP ALA LEU VAL ASP SER MET TYR PHE ALA SEQRES 18 A 323 THR GLU LYS LEU GLY GLY GLN ASN ILE GLU ILE ILE VAL SEQRES 19 A 323 SER ALA SER GLY TRP PRO SER GLU GLY HIS PRO ALA ALA SEQRES 20 A 323 THR LEU LYS ASN ALA ARG THR TYR TYR THR ASN LEU ILE SEQRES 21 A 323 ASN HIS VAL LYS ARG GLY ALA GLY THR PRO LYS LYS PRO SEQRES 22 A 323 GLY LYS THR ILE GLU THR TYR LEU PHE ALA MET PHE ASP SEQRES 23 A 323 GLU ASN GLU LYS LYS GLY GLU ALA SER GLU LYS HIS PHE SEQRES 24 A 323 GLY LEU PHE ASN PRO ASP GLN ARG PRO LYS TYR GLN LEU SEQRES 25 A 323 ASN PHE ASN LEU ASN HIS HIS HIS HIS HIS HIS HET BGC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 BGC 3(C6 H12 O6) FORMUL 3 HOH *338(H2 O) HELIX 1 1 SER A 39 ASN A 50 1 12 HELIX 2 2 HIS A 61 LYS A 69 1 9 HELIX 3 3 PRO A 80 ALA A 88 5 9 HELIX 4 4 ASN A 89 ILE A 101 1 13 HELIX 5 5 ARG A 102 PHE A 105 5 4 HELIX 6 6 ARG A 123 ARG A 130 5 8 HELIX 7 7 PHE A 131 ALA A 146 1 16 HELIX 8 8 PRO A 168 SER A 172 5 5 HELIX 9 9 TYR A 178 HIS A 192 1 15 HELIX 10 10 TYR A 201 ASN A 209 1 9 HELIX 11 11 PRO A 214 LEU A 219 1 6 HELIX 12 12 ASN A 232 LEU A 248 1 17 HELIX 13 13 THR A 271 GLY A 289 1 19 HELIX 14 14 GLU A 316 PHE A 322 5 7 SHEET 1 A 9 ILE A 26 CYS A 29 0 SHEET 2 A 9 LYS A 54 ILE A 57 1 O LYS A 54 N VAL A 28 SHEET 3 A 9 GLU A 74 VAL A 79 1 O GLU A 74 N MET A 55 SHEET 4 A 9 LYS A 109 ASN A 117 1 O ALA A 114 N VAL A 79 SHEET 5 A 9 LYS A 153 TYR A 159 1 O SER A 155 N VAL A 115 SHEET 6 A 9 LEU A 196 ASN A 199 1 O LEU A 197 N THR A 158 SHEET 7 A 9 ILE A 255 SER A 260 1 O ILE A 256 N ALA A 198 SHEET 8 A 9 THR A 302 LEU A 304 1 O TYR A 303 N VAL A 257 SHEET 9 A 9 ILE A 26 CYS A 29 1 N CYS A 29 O LEU A 304 SHEET 1 B 2 LEU A 163 THR A 164 0 SHEET 2 B 2 ILE A 173 PHE A 174 -1 O ILE A 173 N THR A 164 LINK O3 BGC B 1 C1 BGC B 2 1555 1555 1.47 LINK O3 BGC B 2 C1 BGC B 3 1555 1555 1.42 CISPEP 1 PHE A 105 PRO A 106 0 4.71 CISPEP 2 TYR A 167 PRO A 168 0 -2.97 CISPEP 3 PHE A 305 ALA A 306 0 0.19 CRYST1 54.895 49.273 57.075 90.00 98.38 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018217 0.000000 0.002683 0.00000 SCALE2 0.000000 0.020295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017710 0.00000