PDB Short entry for 4H10 HEADER TRANSCRIPTION/DNA 10-SEP-12 4H10 TITLE INTERMOLECULAR RECOGNITION REVEALED BY THE COMPLEX STRUCTURE OF HUMAN TITLE 2 CLOCK-BMAL1 BASIC HELIX-LOOP-HELIX DOMAINS WITH E-BOX DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR-LIKE PROTEIN COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 66-128; COMPND 6 SYNONYM: BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP3, BRAIN AND MUSCLE COMPND 7 ARNT-LIKE 1, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 5, BHLHE5, MEMBER COMPND 8 OF PAS PROTEIN 3, PAS DOMAIN-CONTAINING PROTEIN 3, BHLH-PAS PROTEIN COMPND 9 JAP3; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: UNP RESIDUES 29-89; COMPND 15 SYNONYM: HCLOCK, CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 8, BHLHE8; COMPND 16 EC: 2.3.1.48; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: E-BOX DNA SENSE STRAND; COMPND 20 CHAIN: C; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 4; COMPND 23 MOLECULE: E-BOX DNA ANTISENSE STRAND; COMPND 24 CHAIN: D; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARNTL, BHLHE5, BMAL1, MOP3, PASD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CLOCK, BHLHE8, KIAA0334; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET-21B; SOURCE 21 MOL_ID: 3; SOURCE 22 SYNTHETIC: YES; SOURCE 23 OTHER_DETAILS: SYNTHESIZED SINGLE-STRAND DNA; SOURCE 24 MOL_ID: 4; SOURCE 25 SYNTHETIC: YES; SOURCE 26 OTHER_DETAILS: SYNTHESIZED SINGLE-STRAND DNA KEYWDS BHLH, CIRCADIAN TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,X.-D.SU REVDAT 3 28-FEB-24 4H10 1 SEQADV REVDAT 2 20-FEB-13 4H10 1 JRNL REVDAT 1 26-DEC-12 4H10 0 JRNL AUTH Z.WANG,Y.WU,L.LI,X.D.SU JRNL TITL INTERMOLECULAR RECOGNITION REVEALED BY THE COMPLEX STRUCTURE JRNL TITL 2 OF HUMAN CLOCK-BMAL1 BASIC HELIX-LOOP-HELIX DOMAINS WITH JRNL TITL 3 E-BOX DNA. JRNL REF CELL RES. V. 23 213 2013 JRNL REFN ISSN 1001-0602 JRNL PMID 23229515 JRNL DOI 10.1038/CR.2012.170 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8363 - 4.1056 1.00 2774 143 0.1630 0.2095 REMARK 3 2 4.1056 - 3.2593 0.99 2669 125 0.1702 0.2127 REMARK 3 3 3.2593 - 2.8474 1.00 2655 138 0.2078 0.2444 REMARK 3 4 2.8474 - 2.5871 1.00 2663 132 0.2764 0.3215 REMARK 3 5 2.5871 - 2.4020 0.99 2580 166 0.2913 0.3564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.61 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 49.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.63540 REMARK 3 B22 (A**2) : -4.63540 REMARK 3 B33 (A**2) : 9.27070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1648 REMARK 3 ANGLE : 1.255 2338 REMARK 3 CHIRALITY : 0.062 266 REMARK 3 PLANARITY : 0.004 195 REMARK 3 DIHEDRAL : 25.070 670 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 26.8482 -17.1231 9.8084 REMARK 3 T TENSOR REMARK 3 T11: 0.2933 T22: 0.2302 REMARK 3 T33: 0.0480 T12: -0.0833 REMARK 3 T13: -0.0316 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.4830 L22: 0.7957 REMARK 3 L33: 0.7905 L12: 0.3245 REMARK 3 L13: 0.3883 L23: -0.0301 REMARK 3 S TENSOR REMARK 3 S11: -0.3613 S12: -0.2052 S13: -0.2458 REMARK 3 S21: 0.0042 S22: 0.0309 S23: -0.0831 REMARK 3 S31: -0.1695 S32: -0.2899 S33: 0.1053 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 22.9310 -12.1304 5.7056 REMARK 3 T TENSOR REMARK 3 T11: 0.4028 T22: 0.3959 REMARK 3 T33: 0.0148 T12: -0.0576 REMARK 3 T13: -0.0615 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 0.7515 L22: 1.3360 REMARK 3 L33: 0.2159 L12: 0.6397 REMARK 3 L13: -0.2980 L23: -0.0035 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: 0.3096 S13: 0.2115 REMARK 3 S21: -0.3779 S22: -0.0255 S23: -0.1456 REMARK 3 S31: -0.2218 S32: -0.4386 S33: 0.1164 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 34.9013 -23.3106 -2.4323 REMARK 3 T TENSOR REMARK 3 T11: 0.5122 T22: 0.0970 REMARK 3 T33: 0.3659 T12: -0.1872 REMARK 3 T13: 0.2164 T23: -0.0266 REMARK 3 L TENSOR REMARK 3 L11: 1.8951 L22: 3.5237 REMARK 3 L33: 2.2158 L12: 0.5934 REMARK 3 L13: -0.4383 L23: -0.3871 REMARK 3 S TENSOR REMARK 3 S11: -0.5776 S12: -0.1334 S13: -0.2577 REMARK 3 S21: -1.3170 S22: -0.0257 S23: -1.1119 REMARK 3 S31: 0.4519 S32: 0.2878 S33: 0.4559 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 37.8154 -20.6268 -0.5949 REMARK 3 T TENSOR REMARK 3 T11: 0.3456 T22: 0.2116 REMARK 3 T33: 0.4647 T12: -0.2187 REMARK 3 T13: 0.2019 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.1568 L22: 4.7060 REMARK 3 L33: 1.3441 L12: -0.4300 REMARK 3 L13: 0.4061 L23: -0.8775 REMARK 3 S TENSOR REMARK 3 S11: -0.4493 S12: -0.0764 S13: -0.1077 REMARK 3 S21: -0.6691 S22: 0.0912 S23: -1.5536 REMARK 3 S31: 0.1037 S32: 0.0299 S33: 0.2511 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H10 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14045 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350 AND 0.2 M MAGNESIUM REMARK 280 FORMATE, PH 7.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.96000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.92000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.92000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 65 REMARK 465 HIS A 66 REMARK 465 GLN A 67 REMARK 465 GLY A 68 REMARK 465 TRP A 129 REMARK 465 LEU A 130 REMARK 465 GLU A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 MET B 28 REMARK 465 ASP B 29 REMARK 465 ASP B 30 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 HIS B 96 REMARK 465 HIS B 97 REMARK 465 HIS B 98 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 70 CG1 CG2 CD1 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS B 31 CG CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 HIS B 93 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 305 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG D 305 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT D 312 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT D 312 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG D 313 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 314 O4' - C1' - N1 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT D 315 O4' - C1' - N1 ANGL. DEV. = -7.1 DEGREES REMARK 500 DC D 316 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 91 4.67 -56.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 4H10 A 66 128 UNP O00327 BMAL1_HUMAN 66 128 DBREF 4H10 B 29 89 UNP O15516 CLOCK_HUMAN 29 89 DBREF 4H10 C 103 117 PDB 4H10 4H10 103 117 DBREF 4H10 D 303 317 PDB 4H10 4H10 303 317 SEQADV 4H10 MET A 65 UNP O00327 EXPRESSION TAG SEQADV 4H10 TRP A 129 UNP O00327 EXPRESSION TAG SEQADV 4H10 LEU A 130 UNP O00327 EXPRESSION TAG SEQADV 4H10 GLU A 131 UNP O00327 EXPRESSION TAG SEQADV 4H10 HIS A 132 UNP O00327 EXPRESSION TAG SEQADV 4H10 HIS A 133 UNP O00327 EXPRESSION TAG SEQADV 4H10 HIS A 134 UNP O00327 EXPRESSION TAG SEQADV 4H10 HIS A 135 UNP O00327 EXPRESSION TAG SEQADV 4H10 HIS A 136 UNP O00327 EXPRESSION TAG SEQADV 4H10 HIS A 137 UNP O00327 EXPRESSION TAG SEQADV 4H10 MET B 28 UNP O15516 EXPRESSION TAG SEQADV 4H10 TRP B 90 UNP O15516 EXPRESSION TAG SEQADV 4H10 LEU B 91 UNP O15516 EXPRESSION TAG SEQADV 4H10 GLU B 92 UNP O15516 EXPRESSION TAG SEQADV 4H10 HIS B 93 UNP O15516 EXPRESSION TAG SEQADV 4H10 HIS B 94 UNP O15516 EXPRESSION TAG SEQADV 4H10 HIS B 95 UNP O15516 EXPRESSION TAG SEQADV 4H10 HIS B 96 UNP O15516 EXPRESSION TAG SEQADV 4H10 HIS B 97 UNP O15516 EXPRESSION TAG SEQADV 4H10 HIS B 98 UNP O15516 EXPRESSION TAG SEQRES 1 A 73 MET HIS GLN GLY ARG ILE LYS ASN ALA ARG GLU ALA HIS SEQRES 2 A 73 SER GLN ILE GLU LYS ARG ARG ARG ASP LYS MET ASN SER SEQRES 3 A 73 PHE ILE ASP GLU LEU ALA SER LEU VAL PRO THR CYS ASN SEQRES 4 A 73 ALA MET SER ARG LYS LEU ASP LYS LEU THR VAL LEU ARG SEQRES 5 A 73 MET ALA VAL GLN HIS MET LYS THR LEU ARG GLY ALA TRP SEQRES 6 A 73 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 71 MET ASP ASP LYS ASP LYS ALA LYS ARG VAL SER ARG ASN SEQRES 2 B 71 LYS SER GLU LYS LYS ARG ARG ASP GLN PHE ASN VAL LEU SEQRES 3 B 71 ILE LYS GLU LEU GLY SER MET LEU PRO GLY ASN ALA ARG SEQRES 4 B 71 LYS MET ASP LYS SER THR VAL LEU GLN LYS SER ILE ASP SEQRES 5 B 71 PHE LEU ARG LYS HIS LYS GLU ILE THR ALA TRP LEU GLU SEQRES 6 B 71 HIS HIS HIS HIS HIS HIS SEQRES 1 C 15 DA DG DG DA DA DC DA DC DG DT DG DA DC SEQRES 2 C 15 DC DC SEQRES 1 D 15 DT DG DG DG DT DC DA DC DG DT DG DT DT SEQRES 2 D 15 DC DC FORMUL 5 HOH *106(H2 O) HELIX 1 1 ILE A 70 VAL A 99 1 30 HELIX 2 2 VAL A 99 ALA A 104 1 6 HELIX 3 3 ASP A 110 ARG A 126 1 17 HELIX 4 4 ASP B 32 SER B 59 1 28 HELIX 5 5 ASP B 69 LEU B 91 1 23 CISPEP 1 GLY B 63 ASN B 64 0 -2.98 CISPEP 2 ARG B 66 LYS B 67 0 2.94 CRYST1 98.740 98.740 62.880 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010128 0.005847 0.000000 0.00000 SCALE2 0.000000 0.011694 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015903 0.00000