PDB Short entry for 4H2D HEADER OXIDOREDUCTASE 12-SEP-12 4H2D TITLE CRYSTAL STRUCTURE OF NDOR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADPH-DEPENDENT DIFLAVIN OXIDOREDUCTASE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FMN-BINDING DOMAIN (UNP RESIDUES 1-161); COMPND 5 SYNONYM: NDOR1, NADPH-DEPENDENT FMN AND FAD-CONTAINING COMPND 6 OXIDOREDUCTASE, NOVEL REDUCTASE 1; COMPND 7 EC: 1.6.-.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NDOR1, NR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: GATEWAY PENTR-TEV-D-TOPO PTH-34 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.BANCI,I.BERTINI,V.CALDERONE,S.CIOFI-BAFFONI,M.MIKOLAJCZYK, AUTHOR 2 D.JAISWAL,J.WINKELMANN REVDAT 4 24-JAN-18 4H2D 1 AUTHOR REVDAT 3 15-MAY-13 4H2D 1 JRNL REVDAT 2 01-MAY-13 4H2D 1 JRNL REVDAT 1 17-APR-13 4H2D 0 JRNL AUTH L.BANCI,I.BERTINI,V.CALDERONE,S.CIOFI-BAFFONI,A.GIACHETTI, JRNL AUTH 2 D.JAISWAL,M.MIKOLAJCZYK,M.PICCIOLI,J.WINKELMANN JRNL TITL MOLECULAR VIEW OF AN ELECTRON TRANSFER PROCESS ESSENTIAL FOR JRNL TITL 2 IRON-SULFUR PROTEIN BIOGENESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 7136 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23596212 JRNL DOI 10.1073/PNAS.1302378110 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.A.HUBBARD,A.L.SHEN,R.PASCHKE,C.B.KASPER,J.J.KIM REMARK 1 TITL NADPH-CYTOCHROME P450 OXIDOREDUCTASE. STRUCTURAL BASIS FOR REMARK 1 TITL 2 HYDRIDE AND ELECTRON TRANSFER. REMARK 1 REF J.BIOL.CHEM. V. 276 29163 2001 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 11371558 REMARK 1 DOI 10.1074/JBC.M101731200 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.SIBILLE,M.BLACKLEDGE,B.BRUTSCHER,J.COVES,B.BERSCH REMARK 1 TITL SOLUTION STRUCTURE OF THE SULFITE REDUCTASE FLAVODOXIN-LIKE REMARK 1 TITL 2 DOMAIN FROM ESCHERICHIA COLI. REMARK 1 REF BIOCHEMISTRY V. 44 9086 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 15966732 REMARK 1 DOI 10.1021/BI050437P REMARK 1 REFERENCE 3 REMARK 1 AUTH D.HAMDANE,C.XIA,S.C.IM,H.ZHANG,J.J.KIM,L.WASKELL REMARK 1 TITL STRUCTURE AND FUNCTION OF AN NADPH-CYTOCHROME P450 REMARK 1 TITL 2 OXIDOREDUCTASE IN AN OPEN CONFORMATION CAPABLE OF REDUCING REMARK 1 TITL 3 CYTOCHROME P450. REMARK 1 REF J.BIOL.CHEM. V. 284 11374 2009 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 19171935 REMARK 1 DOI 10.1074/JBC.M807868200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1566 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2442 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.176 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2559 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3484 ; 1.285 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 5.633 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;27.964 ;22.906 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 409 ;16.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.137 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1960 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 161 REMARK 3 RESIDUE RANGE : A 200 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2304 -2.2956 -15.7737 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.0457 REMARK 3 T33: 0.0755 T12: 0.0073 REMARK 3 T13: -0.0005 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.0599 L22: 0.5076 REMARK 3 L33: 0.6656 L12: 0.0837 REMARK 3 L13: -0.0201 L23: 0.1673 REMARK 3 S TENSOR REMARK 3 S11: -0.0251 S12: 0.0222 S13: -0.0187 REMARK 3 S21: -0.0134 S22: 0.0387 S23: 0.0328 REMARK 3 S31: -0.0338 S32: 0.0327 S33: -0.0136 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 156 REMARK 3 RESIDUE RANGE : B 201 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0499 -14.2828 6.2452 REMARK 3 T TENSOR REMARK 3 T11: 0.0975 T22: 0.0018 REMARK 3 T33: 0.0562 T12: -0.0065 REMARK 3 T13: 0.0315 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.3973 L22: 0.8400 REMARK 3 L33: 0.9909 L12: 0.2228 REMARK 3 L13: -0.0432 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.0568 S12: -0.0057 S13: 0.0088 REMARK 3 S21: 0.1599 S22: -0.0268 S23: 0.0803 REMARK 3 S31: -0.0056 S32: -0.0015 S33: -0.0300 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 408 REMARK 3 RESIDUE RANGE : B 301 B 341 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7341 -5.7595 -10.5873 REMARK 3 T TENSOR REMARK 3 T11: 0.0470 T22: 0.0470 REMARK 3 T33: 0.0585 T12: 0.0067 REMARK 3 T13: -0.0103 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.1175 L22: 0.6029 REMARK 3 L33: 0.2817 L12: 0.2135 REMARK 3 L13: -0.1108 L23: -0.0067 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.0080 S13: 0.0151 REMARK 3 S21: 0.0178 S22: 0.0114 S23: 0.0210 REMARK 3 S31: -0.0076 S32: 0.0369 S33: -0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4H2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980110 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.65 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JA1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M MES, 30% REMARK 280 PEG5000 MME, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.74000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.22500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.22500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.11000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.22500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.22500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.37000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.22500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.22500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.11000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.22500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.22500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.37000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 PHE B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 TYR B 157 REMARK 465 PRO B 158 REMARK 465 PRO B 159 REMARK 465 PRO B 160 REMARK 465 PRO B 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 314 O HOH A 404 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 4 C GLN B 5 N 0.177 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 4 CA - C - O ANGL. DEV. = 19.6 DEGREES REMARK 500 PRO B 4 CA - C - N ANGL. DEV. = -28.4 DEGREES REMARK 500 PRO B 4 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 61 -166.29 -105.49 REMARK 500 LYS A 104 70.05 -103.49 REMARK 500 LEU A 129 68.46 -102.24 REMARK 500 ARG B 31 30.06 -92.18 REMARK 500 GLN B 63 41.77 -99.77 REMARK 500 LYS B 104 67.81 -102.49 REMARK 500 LEU B 129 64.77 -104.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 4 GLN A 5 -144.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO B 4 17.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JA1 RELATED DB: PDB REMARK 900 CYPOR-TRIPLE MUTANT REMARK 900 RELATED ID: 1J9Z RELATED DB: PDB REMARK 900 CYPOR-W677G REMARK 900 RELATED ID: 1YKG RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE FLAVODOXIN-LIKE DOMAIN FROM THE REMARK 900 ESCHERICHIA COLI SULFITE REDUCTASE REMARK 900 RELATED ID: 1ES9 RELATED DB: PDB REMARK 900 NADPH-CYTOCHROME P450 REDUCTASE IN AN OPEN CONFORMATION DBREF 4H2D A 1 161 UNP Q9UHB4 NDOR1_HUMAN 1 161 DBREF 4H2D B 1 161 UNP Q9UHB4 NDOR1_HUMAN 1 161 SEQADV 4H2D GLY A -3 UNP Q9UHB4 EXPRESSION TAG SEQADV 4H2D SER A -2 UNP Q9UHB4 EXPRESSION TAG SEQADV 4H2D PHE A -1 UNP Q9UHB4 EXPRESSION TAG SEQADV 4H2D THR A 0 UNP Q9UHB4 EXPRESSION TAG SEQADV 4H2D GLY B -3 UNP Q9UHB4 EXPRESSION TAG SEQADV 4H2D SER B -2 UNP Q9UHB4 EXPRESSION TAG SEQADV 4H2D PHE B -1 UNP Q9UHB4 EXPRESSION TAG SEQADV 4H2D THR B 0 UNP Q9UHB4 EXPRESSION TAG SEQRES 1 A 165 GLY SER PHE THR MET PRO SER PRO GLN LEU LEU VAL LEU SEQRES 2 A 165 PHE GLY SER GLN THR GLY THR ALA GLN ASP VAL SER GLU SEQRES 3 A 165 ARG LEU GLY ARG GLU ALA ARG ARG ARG ARG LEU GLY CYS SEQRES 4 A 165 ARG VAL GLN ALA LEU ASP SER TYR PRO VAL VAL ASN LEU SEQRES 5 A 165 ILE ASN GLU PRO LEU VAL ILE PHE VAL CYS ALA THR THR SEQRES 6 A 165 GLY GLN GLY ASP PRO PRO ASP ASN MET LYS ASN PHE TRP SEQRES 7 A 165 ARG PHE ILE PHE ARG LYS ASN LEU PRO SER THR ALA LEU SEQRES 8 A 165 CYS GLN MET ASP PHE ALA VAL LEU GLY LEU GLY ASP SER SEQRES 9 A 165 SER TYR ALA LYS PHE ASN PHE VAL ALA LYS LYS LEU HIS SEQRES 10 A 165 ARG ARG LEU LEU GLN LEU GLY GLY SER ALA LEU LEU PRO SEQRES 11 A 165 VAL CYS LEU GLY ASP ASP GLN HIS GLU LEU GLY PRO ASP SEQRES 12 A 165 ALA ALA VAL ASP PRO TRP LEU ARG ASP LEU TRP ASP ARG SEQRES 13 A 165 VAL LEU GLY LEU TYR PRO PRO PRO PRO SEQRES 1 B 165 GLY SER PHE THR MET PRO SER PRO GLN LEU LEU VAL LEU SEQRES 2 B 165 PHE GLY SER GLN THR GLY THR ALA GLN ASP VAL SER GLU SEQRES 3 B 165 ARG LEU GLY ARG GLU ALA ARG ARG ARG ARG LEU GLY CYS SEQRES 4 B 165 ARG VAL GLN ALA LEU ASP SER TYR PRO VAL VAL ASN LEU SEQRES 5 B 165 ILE ASN GLU PRO LEU VAL ILE PHE VAL CYS ALA THR THR SEQRES 6 B 165 GLY GLN GLY ASP PRO PRO ASP ASN MET LYS ASN PHE TRP SEQRES 7 B 165 ARG PHE ILE PHE ARG LYS ASN LEU PRO SER THR ALA LEU SEQRES 8 B 165 CYS GLN MET ASP PHE ALA VAL LEU GLY LEU GLY ASP SER SEQRES 9 B 165 SER TYR ALA LYS PHE ASN PHE VAL ALA LYS LYS LEU HIS SEQRES 10 B 165 ARG ARG LEU LEU GLN LEU GLY GLY SER ALA LEU LEU PRO SEQRES 11 B 165 VAL CYS LEU GLY ASP ASP GLN HIS GLU LEU GLY PRO ASP SEQRES 12 B 165 ALA ALA VAL ASP PRO TRP LEU ARG ASP LEU TRP ASP ARG SEQRES 13 B 165 VAL LEU GLY LEU TYR PRO PRO PRO PRO HET FMN A 200 31 HET FMN B 201 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *149(H2 O) HELIX 1 1 GLY A 15 ARG A 31 1 17 HELIX 2 2 PRO A 44 GLU A 51 5 8 HELIX 3 3 THR A 61 ASP A 65 5 5 HELIX 4 4 PRO A 67 ASN A 69 5 3 HELIX 5 5 MET A 70 PHE A 78 1 9 HELIX 6 6 ASN A 106 LEU A 119 1 14 HELIX 7 7 PRO A 138 TYR A 157 1 20 HELIX 8 8 GLY B 15 ARG B 31 1 17 HELIX 9 9 ASP B 41 TYR B 43 5 3 HELIX 10 10 PRO B 44 GLU B 51 5 8 HELIX 11 11 PRO B 67 ASN B 69 5 3 HELIX 12 12 MET B 70 PHE B 78 1 9 HELIX 13 13 ASN B 106 LEU B 119 1 14 HELIX 14 14 PRO B 138 LEU B 154 1 17 SHEET 1 A 5 GLY A 34 ALA A 39 0 SHEET 2 A 5 GLN A 5 GLY A 11 1 N VAL A 8 O ARG A 36 SHEET 3 A 5 LEU A 53 ALA A 59 1 O VAL A 57 N LEU A 9 SHEET 4 A 5 ASP A 91 GLY A 98 1 O LEU A 95 N PHE A 56 SHEET 5 A 5 SER A 122 ALA A 123 1 O SER A 122 N PHE A 92 SHEET 1 B 5 GLY A 34 ALA A 39 0 SHEET 2 B 5 GLN A 5 GLY A 11 1 N VAL A 8 O ARG A 36 SHEET 3 B 5 LEU A 53 ALA A 59 1 O VAL A 57 N LEU A 9 SHEET 4 B 5 ASP A 91 GLY A 98 1 O LEU A 95 N PHE A 56 SHEET 5 B 5 CYS A 128 ASP A 131 1 O CYS A 128 N VAL A 94 SHEET 1 C 5 GLY B 34 ALA B 39 0 SHEET 2 C 5 GLN B 5 GLY B 11 1 N VAL B 8 O ARG B 36 SHEET 3 C 5 LEU B 53 ALA B 59 1 O ILE B 55 N LEU B 7 SHEET 4 C 5 ASP B 91 GLY B 98 1 O LEU B 95 N PHE B 56 SHEET 5 C 5 SER B 122 ALA B 123 1 O SER B 122 N PHE B 92 SHEET 1 D 5 GLY B 34 ALA B 39 0 SHEET 2 D 5 GLN B 5 GLY B 11 1 N VAL B 8 O ARG B 36 SHEET 3 D 5 LEU B 53 ALA B 59 1 O ILE B 55 N LEU B 7 SHEET 4 D 5 ASP B 91 GLY B 98 1 O LEU B 95 N PHE B 56 SHEET 5 D 5 CYS B 128 ASP B 131 1 O CYS B 128 N VAL B 94 SITE 1 AC1 22 SER A 12 GLN A 13 THR A 14 GLY A 15 SITE 2 AC1 22 THR A 16 ALA A 17 ALA A 59 THR A 60 SITE 3 AC1 22 THR A 61 GLY A 62 GLY A 64 LEU A 97 SITE 4 AC1 22 GLY A 98 ASP A 99 TYR A 102 LYS A 104 SITE 5 AC1 22 PHE A 105 ASN A 106 ASP A 132 HOH A 305 SITE 6 AC1 22 HOH A 332 HOH A 339 SITE 1 AC2 21 SER B 12 GLN B 13 THR B 14 GLY B 15 SITE 2 AC2 21 THR B 16 ALA B 17 ALA B 59 THR B 60 SITE 3 AC2 21 THR B 61 GLY B 62 GLY B 64 LEU B 97 SITE 4 AC2 21 GLY B 98 ASP B 99 TYR B 102 LYS B 104 SITE 5 AC2 21 PHE B 105 ASN B 106 ASP B 132 HOH B 307 SITE 6 AC2 21 HOH B 335 CRYST1 80.450 80.450 101.480 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012430 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009854 0.00000