PDB Short entry for 4H36 HEADER TRANSFERASE 13-SEP-12 4H36 TITLE CRYSTAL STRUCTURE OF JNK3 IN COMPLEX WITH ATF2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 45-400); COMPND 5 SYNONYM: MAP KINASE 10, MAPK 10, MAP KINASE P49 3F12, STRESS- COMPND 6 ACTIVATED PROTEIN KINASE 1B, SAPK1B, STRESS-ACTIVATED PROTEIN KINASE COMPND 7 JNK3, C-JUN N-TERMINAL KINASE 3; COMPND 8 EC: 2.7.11.24; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CYCLIC AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-2; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 48-55; COMPND 14 SYNONYM: CAMP-DEPENDENT TRANSCRIPTION FACTOR ATF-2, ACTIVATING COMPND 15 TRANSCRIPTION FACTOR 2, CYCLIC AMP-RESPONSIVE ELEMENT-BINDING PROTEIN COMPND 16 2, CREB-2, CAMP-RESPONSIVE ELEMENT-BINDING PROTEIN 2, HB16, CAMP COMPND 17 RESPONSE ELEMENT-BINDING PROTEIN CRE-BP1; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JNK3, JNK3A, MAPK10, PRKM10, SAPK1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ATF2, CREB2, CREBP1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.NWACHUKWU,J.D.LAUGHLIN,M.FIGUERA-LOSADA,L.CHERRY,K.W.NETTLES, AUTHOR 2 P.V.LOGRASSO REVDAT 6 20-SEP-23 4H36 1 REMARK REVDAT 5 15-NOV-17 4H36 1 REMARK REVDAT 4 17-JUN-15 4H36 1 ATOM COMPND DBREF SEQADV REVDAT 4 2 1 SEQRES REVDAT 3 26-DEC-12 4H36 1 JRNL REVDAT 2 28-NOV-12 4H36 1 JRNL REVDAT 1 21-NOV-12 4H36 0 JRNL AUTH J.D.LAUGHLIN,J.C.NWACHUKWU,M.FIGUERA-LOSADA,L.CHERRY, JRNL AUTH 2 K.W.NETTLES,P.V.LOGRASSO JRNL TITL STRUCTURAL MECHANISMS OF ALLOSTERY AND AUTOINHIBITION IN JNK JRNL TITL 2 FAMILY KINASES. JRNL REF STRUCTURE V. 20 2174 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 23142346 JRNL DOI 10.1016/J.STR.2012.09.021 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1294 - 4.7604 1.00 2731 119 0.2126 0.2850 REMARK 3 2 4.7604 - 3.7793 1.00 2594 142 0.1799 0.2151 REMARK 3 3 3.7793 - 3.3019 1.00 2572 134 0.2274 0.2817 REMARK 3 4 3.3019 - 3.0000 1.00 2546 133 0.2855 0.3369 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 11.74 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.71470 REMARK 3 B22 (A**2) : -2.71470 REMARK 3 B33 (A**2) : 5.42940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2930 REMARK 3 ANGLE : 0.845 3983 REMARK 3 CHIRALITY : 0.061 449 REMARK 3 PLANARITY : 0.004 512 REMARK 3 DIHEDRAL : 16.114 1084 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 45:52) REMARK 3 ORIGIN FOR THE GROUP (A): -52.3056 22.4258 -9.5284 REMARK 3 T TENSOR REMARK 3 T11: 0.3589 T22: 0.5998 REMARK 3 T33: 0.3587 T12: 0.1045 REMARK 3 T13: -0.1693 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 5.0065 L22: 7.4972 REMARK 3 L33: 5.8646 L12: -1.0379 REMARK 3 L13: 1.2040 L23: 3.7533 REMARK 3 S TENSOR REMARK 3 S11: -0.5726 S12: -0.6690 S13: 0.2303 REMARK 3 S21: 0.1066 S22: 0.5719 S23: 0.8076 REMARK 3 S31: -0.4746 S32: -0.8182 S33: -0.2555 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 53:76) REMARK 3 ORIGIN FOR THE GROUP (A): -43.0240 18.2385 -8.0143 REMARK 3 T TENSOR REMARK 3 T11: 0.4514 T22: 0.2084 REMARK 3 T33: 0.2219 T12: 0.1298 REMARK 3 T13: -0.1312 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.0555 L22: 1.6019 REMARK 3 L33: 0.3797 L12: 0.2973 REMARK 3 L13: -0.6257 L23: -0.2506 REMARK 3 S TENSOR REMARK 3 S11: -0.0834 S12: -0.0688 S13: -0.1226 REMARK 3 S21: -0.0892 S22: -0.2032 S23: -0.0242 REMARK 3 S31: 0.1438 S32: 0.0428 S33: -0.1500 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 77:87) REMARK 3 ORIGIN FOR THE GROUP (A): -39.7266 23.8069 -14.8001 REMARK 3 T TENSOR REMARK 3 T11: 0.4422 T22: 0.3433 REMARK 3 T33: 0.2279 T12: 0.1668 REMARK 3 T13: -0.1409 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 0.9345 L22: 1.0038 REMARK 3 L33: 0.6534 L12: -0.3473 REMARK 3 L13: 0.7724 L23: -0.2063 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0212 S13: 0.0533 REMARK 3 S21: -0.1934 S22: -0.0558 S23: 0.0717 REMARK 3 S31: -0.1299 S32: -0.1066 S33: 0.0059 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 88:103) REMARK 3 ORIGIN FOR THE GROUP (A): -39.8965 22.3410 1.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.4303 T22: 0.1252 REMARK 3 T33: 0.1757 T12: 0.0255 REMARK 3 T13: -0.0472 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.9729 L22: 1.1335 REMARK 3 L33: 1.5691 L12: -0.2327 REMARK 3 L13: 0.0556 L23: 1.2909 REMARK 3 S TENSOR REMARK 3 S11: 0.1495 S12: -0.1822 S13: -0.0929 REMARK 3 S21: 0.3699 S22: -0.0468 S23: 0.0266 REMARK 3 S31: 0.3079 S32: -0.1021 S33: -0.0323 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 104:126) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4274 31.3162 0.7458 REMARK 3 T TENSOR REMARK 3 T11: 0.3592 T22: 0.2504 REMARK 3 T33: 0.1764 T12: 0.1832 REMARK 3 T13: -0.0053 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.3916 L22: 0.4790 REMARK 3 L33: 2.7702 L12: 0.3787 REMARK 3 L13: -2.3803 L23: 0.4170 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.0029 S13: -0.0973 REMARK 3 S21: 0.0848 S22: -0.2408 S23: -0.1368 REMARK 3 S31: 0.1894 S32: 0.1825 S33: 0.1226 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 127:148) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2064 27.5924 -1.6582 REMARK 3 T TENSOR REMARK 3 T11: 0.2887 T22: 0.1891 REMARK 3 T33: 0.1468 T12: 0.0933 REMARK 3 T13: -0.0990 T23: -0.0825 REMARK 3 L TENSOR REMARK 3 L11: 0.9668 L22: 2.3616 REMARK 3 L33: 2.9443 L12: -0.7255 REMARK 3 L13: 0.9055 L23: 0.4810 REMARK 3 S TENSOR REMARK 3 S11: -0.1211 S12: -0.2499 S13: 0.0156 REMARK 3 S21: 0.2294 S22: -0.0073 S23: 0.3169 REMARK 3 S31: -0.0690 S32: -0.6073 S33: 0.2183 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 149:164) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8927 17.3401 -14.0556 REMARK 3 T TENSOR REMARK 3 T11: 0.6617 T22: 0.4496 REMARK 3 T33: 0.3159 T12: 0.3343 REMARK 3 T13: 0.0417 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.4804 L22: 1.3455 REMARK 3 L33: 0.0308 L12: 0.5409 REMARK 3 L13: -0.0077 L23: -0.1654 REMARK 3 S TENSOR REMARK 3 S11: 0.0447 S12: 0.2681 S13: -0.2981 REMARK 3 S21: -0.1606 S22: -0.0945 S23: -0.1979 REMARK 3 S31: 0.1838 S32: 0.1424 S33: -0.0013 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 165:192) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9262 29.2581 -4.4118 REMARK 3 T TENSOR REMARK 3 T11: 0.1987 T22: 0.1791 REMARK 3 T33: 0.1961 T12: 0.1096 REMARK 3 T13: 0.0036 T23: 0.0765 REMARK 3 L TENSOR REMARK 3 L11: 0.9712 L22: 1.3532 REMARK 3 L33: 0.3271 L12: -0.4545 REMARK 3 L13: 0.3051 L23: -0.2296 REMARK 3 S TENSOR REMARK 3 S11: 0.2442 S12: 0.1952 S13: -0.0148 REMARK 3 S21: -0.0801 S22: -0.1687 S23: 0.0736 REMARK 3 S31: 0.1720 S32: 0.1699 S33: -0.0323 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 193:207) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6696 24.0493 -10.1781 REMARK 3 T TENSOR REMARK 3 T11: 0.2616 T22: 0.1814 REMARK 3 T33: 0.0693 T12: 0.1062 REMARK 3 T13: -0.1438 T23: -0.1082 REMARK 3 L TENSOR REMARK 3 L11: 2.3086 L22: 2.1751 REMARK 3 L33: 0.5542 L12: 0.4804 REMARK 3 L13: 0.9851 L23: 0.7348 REMARK 3 S TENSOR REMARK 3 S11: 0.1316 S12: 0.1305 S13: -0.0728 REMARK 3 S21: -0.1560 S22: -0.1453 S23: 0.0124 REMARK 3 S31: 0.1220 S32: -0.0170 S33: -0.0590 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 208:220) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9673 19.9183 1.8213 REMARK 3 T TENSOR REMARK 3 T11: 0.7795 T22: 0.7227 REMARK 3 T33: 0.6825 T12: -0.0650 REMARK 3 T13: -0.0888 T23: 0.1323 REMARK 3 L TENSOR REMARK 3 L11: 0.3738 L22: 2.1769 REMARK 3 L33: 0.7502 L12: 0.7520 REMARK 3 L13: -0.4787 L23: -1.2627 REMARK 3 S TENSOR REMARK 3 S11: 0.2338 S12: -0.0844 S13: -0.3133 REMARK 3 S21: 0.3026 S22: 0.0102 S23: 0.0630 REMARK 3 S31: 0.2824 S32: 0.0089 S33: -0.1028 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 222:229) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7276 13.8307 1.8932 REMARK 3 T TENSOR REMARK 3 T11: 0.8016 T22: 0.3852 REMARK 3 T33: 0.1117 T12: 0.3022 REMARK 3 T13: -0.0260 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 2.8992 L22: 5.1534 REMARK 3 L33: 6.3445 L12: -1.3693 REMARK 3 L13: -2.8507 L23: -2.3909 REMARK 3 S TENSOR REMARK 3 S11: 0.1973 S12: 0.3741 S13: -0.1385 REMARK 3 S21: -0.5549 S22: -0.2209 S23: 0.2280 REMARK 3 S31: 0.4424 S32: -0.2788 S33: -0.0606 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 230:249) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7825 25.5741 8.1005 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.3150 REMARK 3 T33: 0.2615 T12: 0.2267 REMARK 3 T13: -0.0085 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.8353 L22: 0.9011 REMARK 3 L33: 1.1038 L12: -0.4504 REMARK 3 L13: 0.1864 L23: -0.6124 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: 0.1151 S13: 0.2092 REMARK 3 S21: 0.0918 S22: 0.1203 S23: -0.0179 REMARK 3 S31: -0.1456 S32: -0.0520 S33: 0.0197 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 250:259) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7402 16.9298 -6.8008 REMARK 3 T TENSOR REMARK 3 T11: 0.4531 T22: 0.3996 REMARK 3 T33: 0.3047 T12: 0.5642 REMARK 3 T13: -0.0193 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.3127 L22: 0.6339 REMARK 3 L33: 0.6996 L12: -0.1048 REMARK 3 L13: -0.2767 L23: 0.6135 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: 0.0394 S13: -0.0884 REMARK 3 S21: -0.0277 S22: 0.0108 S23: 0.0163 REMARK 3 S31: 0.1341 S32: 0.1007 S33: 0.1249 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 260:276) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2734 12.0757 7.3819 REMARK 3 T TENSOR REMARK 3 T11: 0.6773 T22: 0.3470 REMARK 3 T33: 0.2398 T12: 0.5045 REMARK 3 T13: 0.1002 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.1365 L22: 0.2547 REMARK 3 L33: 0.0771 L12: -0.1548 REMARK 3 L13: 0.0428 L23: -0.0641 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: 0.0253 S13: -0.0534 REMARK 3 S21: 0.0239 S22: 0.0442 S23: 0.0875 REMARK 3 S31: 0.0592 S32: -0.0122 S33: 0.2943 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 277:326) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4647 18.2322 6.0585 REMARK 3 T TENSOR REMARK 3 T11: 0.1770 T22: 0.6448 REMARK 3 T33: 0.1908 T12: 1.1450 REMARK 3 T13: 0.0327 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 0.0289 L22: 0.0175 REMARK 3 L33: 0.0860 L12: -0.0799 REMARK 3 L13: -0.0663 L23: 0.0509 REMARK 3 S TENSOR REMARK 3 S11: 0.0562 S12: 0.2211 S13: 0.0072 REMARK 3 S21: -0.0130 S22: -0.1192 S23: -0.1009 REMARK 3 S31: 0.1137 S32: 0.2892 S33: -0.2433 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 327:354) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9421 28.6708 -2.4915 REMARK 3 T TENSOR REMARK 3 T11: 0.2770 T22: 0.4793 REMARK 3 T33: 0.2560 T12: 0.1672 REMARK 3 T13: 0.0759 T23: 0.0979 REMARK 3 L TENSOR REMARK 3 L11: 1.0510 L22: 1.9045 REMARK 3 L33: 0.4765 L12: -0.4643 REMARK 3 L13: -0.0708 L23: 0.8530 REMARK 3 S TENSOR REMARK 3 S11: 0.2712 S12: -0.0040 S13: 0.0946 REMARK 3 S21: -0.2574 S22: 0.0560 S23: -0.4267 REMARK 3 S31: 0.0986 S32: 0.4759 S33: -0.2124 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 355:373) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3005 37.2545 -10.7155 REMARK 3 T TENSOR REMARK 3 T11: 0.4117 T22: 0.6465 REMARK 3 T33: 0.3469 T12: 0.1454 REMARK 3 T13: 0.1796 T23: 0.2287 REMARK 3 L TENSOR REMARK 3 L11: 1.6338 L22: 0.1058 REMARK 3 L33: 0.2020 L12: 0.3376 REMARK 3 L13: -0.5091 L23: -0.0694 REMARK 3 S TENSOR REMARK 3 S11: 0.2796 S12: 0.0167 S13: 0.4640 REMARK 3 S21: -0.0385 S22: -0.0616 S23: 0.0033 REMARK 3 S31: -0.3882 S32: 0.4355 S33: -0.1827 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 374:383) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1718 36.8983 10.7426 REMARK 3 T TENSOR REMARK 3 T11: 0.7265 T22: 0.4709 REMARK 3 T33: 0.4391 T12: 0.0619 REMARK 3 T13: 0.1379 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 6.4762 L22: 1.4057 REMARK 3 L33: 2.7679 L12: 1.9169 REMARK 3 L13: -3.4009 L23: -1.2507 REMARK 3 S TENSOR REMARK 3 S11: 0.0872 S12: -0.7761 S13: -0.1006 REMARK 3 S21: 0.5486 S22: 0.1491 S23: 0.5239 REMARK 3 S31: 0.0843 S32: -0.5018 S33: -0.2179 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 384:389) REMARK 3 ORIGIN FOR THE GROUP (A): -42.2776 31.1394 17.1276 REMARK 3 T TENSOR REMARK 3 T11: 0.5441 T22: 0.2895 REMARK 3 T33: 0.2900 T12: -0.0269 REMARK 3 T13: -0.0526 T23: -0.1202 REMARK 3 L TENSOR REMARK 3 L11: 3.0420 L22: 6.8633 REMARK 3 L33: 4.6861 L12: -1.3995 REMARK 3 L13: 1.1077 L23: 0.6868 REMARK 3 S TENSOR REMARK 3 S11: -0.2009 S12: -0.0980 S13: 0.3940 REMARK 3 S21: 0.0912 S22: -0.0766 S23: 0.0398 REMARK 3 S31: -0.3755 S32: -0.1022 S33: 0.0969 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 390:400) REMARK 3 ORIGIN FOR THE GROUP (A): -44.3554 34.1096 5.7771 REMARK 3 T TENSOR REMARK 3 T11: 0.3716 T22: 0.2775 REMARK 3 T33: 0.1695 T12: 0.0837 REMARK 3 T13: 0.0683 T23: -0.1152 REMARK 3 L TENSOR REMARK 3 L11: 2.0240 L22: 2.8210 REMARK 3 L33: 2.2991 L12: -0.5154 REMARK 3 L13: 0.3689 L23: 2.1847 REMARK 3 S TENSOR REMARK 3 S11: 0.1205 S12: 0.2287 S13: 0.1216 REMARK 3 S21: -0.3152 S22: -0.0770 S23: 0.0032 REMARK 3 S31: -0.3030 S32: -0.0294 S33: -0.1547 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H36 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.17 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL, ASYMMETRIC REMARK 200 CUT 4.965 DEGREES REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10970 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.126 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.1_743 REMARK 200 STARTING MODEL: PDB ENTRY 1JNK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M BIS-TRIS, REMARK 280 28-31% PEG3350, PH 5.5, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.70667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.70667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.35333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 320 REMARK 465 ASP A 321 REMARK 465 SER A 322 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 45 CG OD1 OD2 REMARK 470 LYS A 106 CE NZ REMARK 470 LYS A 116 CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 LYS A 198 CE NZ REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 THR A 213 OG1 CG2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 LYS A 288 CD CE NZ REMARK 470 LYS A 289 CE NZ REMARK 470 HIS A 324 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 ARG A 333 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 355 CG CD OE1 NE2 REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 GLN A 379 CG CD OE1 NE2 REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 ARG A 383 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE2 TYR A 223 O VAL A 224 1.64 REMARK 500 NZ LYS A 204 O HOH A 502 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 -66.06 62.99 REMARK 500 ALA A 74 -80.36 76.87 REMARK 500 GLN A 140 -18.12 -152.55 REMARK 500 LEU A 161 148.29 67.21 REMARK 500 ARG A 188 -34.38 70.69 REMARK 500 ALA A 214 -85.51 81.29 REMARK 500 MET A 220 -145.78 -121.83 REMARK 500 THR A 221 156.33 66.11 REMARK 500 PRO A 222 103.40 -59.59 REMARK 500 LYS A 241 -158.50 -139.81 REMARK 500 ASN A 243 20.36 -74.56 REMARK 500 LYS A 303 98.67 -67.51 REMARK 500 HIS B 49 -8.40 86.94 REMARK 500 GLU B 50 58.57 -102.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 221 PRO A 222 148.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H39 RELATED DB: PDB REMARK 900 JNK3 COMPLEXED WITH JIP1 PEPTIDE REMARK 900 RELATED ID: 4H3B RELATED DB: PDB REMARK 900 JNK3 COMPLEXED WITH SAB PEPTIDE DBREF 4H36 A 45 400 UNP P53779 MK10_HUMAN 45 400 DBREF 4H36 B 48 55 UNP P15336 ATF2_HUMAN 48 55 SEQRES 1 A 356 ASP ASN GLN PHE TYR SER VAL GLU VAL GLY ASP SER THR SEQRES 2 A 356 PHE THR VAL LEU LYS ARG TYR GLN ASN LEU LYS PRO ILE SEQRES 3 A 356 GLY SER GLY ALA GLN GLY ILE VAL CYS ALA ALA TYR ASP SEQRES 4 A 356 ALA VAL LEU ASP ARG ASN VAL ALA ILE LYS LYS LEU SER SEQRES 5 A 356 ARG PRO PHE GLN ASN GLN THR HIS ALA LYS ARG ALA TYR SEQRES 6 A 356 ARG GLU LEU VAL LEU MET LYS CYS VAL ASN HIS LYS ASN SEQRES 7 A 356 ILE ILE SER LEU LEU ASN VAL PHE THR PRO GLN LYS THR SEQRES 8 A 356 LEU GLU GLU PHE GLN ASP VAL TYR LEU VAL MET GLU LEU SEQRES 9 A 356 MET ASP ALA ASN LEU CYS GLN VAL ILE GLN MET GLU LEU SEQRES 10 A 356 ASP HIS GLU ARG MET SER TYR LEU LEU TYR GLN MET LEU SEQRES 11 A 356 CYS GLY ILE LYS HIS LEU HIS SER ALA GLY ILE ILE HIS SEQRES 12 A 356 ARG ASP LEU LYS PRO SER ASN ILE VAL VAL LYS SER ASP SEQRES 13 A 356 CYS THR LEU LYS ILE LEU ASP PHE GLY LEU ALA ARG THR SEQRES 14 A 356 ALA GLY THR SER PHE MET MET THR PRO TYR VAL VAL THR SEQRES 15 A 356 ARG TYR TYR ARG ALA PRO GLU VAL ILE LEU GLY MET GLY SEQRES 16 A 356 TYR LYS GLU ASN VAL ASP ILE TRP SER VAL GLY CYS ILE SEQRES 17 A 356 MET GLY GLU MET VAL ARG HIS LYS ILE LEU PHE PRO GLY SEQRES 18 A 356 ARG ASP TYR ILE ASP GLN TRP ASN LYS VAL ILE GLU GLN SEQRES 19 A 356 LEU GLY THR PRO CYS PRO GLU PHE MET LYS LYS LEU GLN SEQRES 20 A 356 PRO THR VAL ARG ASN TYR VAL GLU ASN ARG PRO LYS TYR SEQRES 21 A 356 ALA GLY LEU THR PHE PRO LYS LEU PHE PRO ASP SER LEU SEQRES 22 A 356 PHE PRO ALA ASP SER GLU HIS ASN LYS LEU LYS ALA SER SEQRES 23 A 356 GLN ALA ARG ASP LEU LEU SER LYS MET LEU VAL ILE ASP SEQRES 24 A 356 PRO ALA LYS ARG ILE SER VAL ASP ASP ALA LEU GLN HIS SEQRES 25 A 356 PRO TYR ILE ASN VAL TRP TYR ASP PRO ALA GLU VAL GLU SEQRES 26 A 356 ALA PRO PRO PRO GLN ILE TYR ASP LYS GLN LEU ASP GLU SEQRES 27 A 356 ARG GLU HIS THR ILE GLU GLU TRP LYS GLU LEU ILE TYR SEQRES 28 A 356 LYS GLU VAL MET ASN SEQRES 1 B 8 LYS HIS GLU MET THR LEU LYS PHE FORMUL 3 HOH *4(H2 O) HELIX 1 1 ASN A 101 MET A 115 1 15 HELIX 2 2 LEU A 153 GLN A 158 1 6 HELIX 3 3 ASP A 162 ALA A 183 1 22 HELIX 4 4 GLY A 215 MET A 220 1 6 HELIX 5 5 VAL A 225 ARG A 230 5 6 HELIX 6 6 ALA A 231 LEU A 236 1 6 HELIX 7 7 ASN A 243 HIS A 259 1 17 HELIX 8 8 ASP A 267 GLY A 280 1 14 HELIX 9 9 CYS A 283 LYS A 288 1 6 HELIX 10 10 GLN A 291 ASN A 300 1 10 HELIX 11 11 THR A 308 PHE A 313 1 6 HELIX 12 12 LYS A 326 LEU A 340 1 15 HELIX 13 13 ASP A 343 ARG A 347 5 5 HELIX 14 14 SER A 349 HIS A 356 1 8 HELIX 15 15 HIS A 356 VAL A 361 1 6 HELIX 16 16 ASP A 364 GLU A 369 1 6 HELIX 17 17 ASP A 377 ASP A 381 5 5 HELIX 18 18 THR A 386 ASN A 400 1 15 SHEET 1 A 2 PHE A 48 VAL A 53 0 SHEET 2 A 2 SER A 56 LEU A 61 -1 O PHE A 58 N VAL A 51 SHEET 1 B 5 TYR A 64 SER A 72 0 SHEET 2 B 5 GLY A 76 ASP A 83 -1 O TYR A 82 N GLN A 65 SHEET 3 B 5 ARG A 88 LEU A 95 -1 O ILE A 92 N CYS A 79 SHEET 4 B 5 TYR A 143 GLU A 147 -1 O MET A 146 N ALA A 91 SHEET 5 B 5 LEU A 126 PHE A 130 -1 N ASN A 128 O VAL A 145 SHEET 1 C 3 ALA A 151 ASN A 152 0 SHEET 2 C 3 ILE A 195 VAL A 197 -1 O VAL A 197 N ALA A 151 SHEET 3 C 3 LEU A 203 ILE A 205 -1 O LYS A 204 N VAL A 196 CISPEP 1 GLY A 73 ALA A 74 0 2.03 CISPEP 2 ARG A 212 THR A 213 0 0.68 CISPEP 3 THR A 213 ALA A 214 0 -3.41 CRYST1 84.580 84.580 127.060 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011823 0.006826 0.000000 0.00000 SCALE2 0.000000 0.013652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007870 0.00000