PDB Short entry for 4H3E HEADER OXIDOREDUCTASE 13-SEP-12 4H3E TITLE CRYSTAL STRUCTURE OF A PUTATIVE IRON SUPEROXIDE DISMUTASE FROM TITLE 2 TRYPANOSOMA CRUZI BOUND TO IRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FESOD; COMPND 5 EC: 1.15.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 353153; SOURCE 4 STRAIN: CL BRENER; SOURCE 5 GENE: TC00.1047053509775.40; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PAVA0421 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, RADICAL OXYGEN SPECIES, TRYPANOSOMIASIS, KEYWDS 4 PARASITIC EUGLENOID TRYPANOSOME, CHAGAS DISEASE, RADICAL SCAVENGER, KEYWDS 5 HYDROGEN PEROXIDE, ANTIOXIDANT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 20-SEP-23 4H3E 1 REMARK SEQADV LINK REVDAT 2 03-JUN-15 4H3E 1 JRNL REVDAT 1 26-SEP-12 4H3E 0 JRNL AUTH I.Q.PHAN,D.R.DAVIES,N.S.MORETTI,D.SHANMUGAM,I.CESTARI, JRNL AUTH 2 A.ANUPAMA,J.W.FAIRMAN,T.E.EDWARDS,K.STUART,S.SCHENKMAN, JRNL AUTH 3 P.J.MYLER JRNL TITL IRON SUPEROXIDE DISMUTASES IN EUKARYOTIC PATHOGENS: NEW JRNL TITL 2 INSIGHTS FROM APICOMPLEXA AND TRYPANOSOMA STRUCTURES. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 71 615 2015 JRNL REF 2 BIOL COMMUN JRNL REFN JRNL PMID 25961325 JRNL DOI 10.1107/S2053230X15004185 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 19189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1038 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1368 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 348 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.364 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.698 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3456 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3150 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4712 ; 1.407 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7242 ; 1.008 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 6.073 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;38.245 ;24.534 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;12.935 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.965 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 499 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3993 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 841 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 20 233 B 20 233 12529 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 233 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2983 1.0483 6.1511 REMARK 3 T TENSOR REMARK 3 T11: 0.0531 T22: 0.0108 REMARK 3 T33: 0.0024 T12: 0.0000 REMARK 3 T13: -0.0076 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.6030 L22: 0.2751 REMARK 3 L33: 0.1527 L12: -0.0847 REMARK 3 L13: 0.0463 L23: -0.0099 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: 0.0231 S13: -0.0274 REMARK 3 S21: -0.0343 S22: -0.0256 S23: 0.0054 REMARK 3 S31: -0.0137 S32: -0.0050 S33: -0.0031 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 233 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5696 11.2692 31.6990 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0120 REMARK 3 T33: 0.0273 T12: 0.0022 REMARK 3 T13: -0.0133 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.4817 L22: 0.2454 REMARK 3 L33: 0.2134 L12: -0.1651 REMARK 3 L13: -0.1367 L23: -0.0257 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.0289 S13: 0.0100 REMARK 3 S21: 0.0047 S22: 0.0275 S23: -0.0346 REMARK 3 S31: -0.0024 S32: -0.0133 S33: -0.0162 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 4H3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 4F2N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRCRA.00198.B.B1 PS01521 AT 23.05 REMARK 280 MG/ML AGAINST JCSG+ SCREEN CONDITION G1: 0.1 M HEPES, PH 7.0, 30% REMARK 280 JEFFAMINE ED-2001, CRYSTAL TRACKING ID 235439G1, UNIQUE PUCK ID REMARK 280 GVR7-6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.82500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.72500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.72500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.82500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ASN A 7 REMARK 465 ILE A 8 REMARK 465 SER A 9 REMARK 465 ILE A 10 REMARK 465 ALA A 11 REMARK 465 ARG A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 MET A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 MET A 18 REMARK 465 SER A 19 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 ARG B 3 REMARK 465 ARG B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 6 REMARK 465 ASN B 7 REMARK 465 ILE B 8 REMARK 465 SER B 9 REMARK 465 ILE B 10 REMARK 465 ALA B 11 REMARK 465 ARG B 12 REMARK 465 GLY B 13 REMARK 465 ARG B 14 REMARK 465 MET B 15 REMARK 465 ALA B 16 REMARK 465 LEU B 17 REMARK 465 MET B 18 REMARK 465 SER B 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLN A 170 CG CD OE1 NE2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 GLN B 148 CG CD OE1 NE2 REMARK 470 GLN B 170 CG CD OE1 NE2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 GLN B 230 CG CD OE1 NE2 REMARK 470 LYS B 233 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 -63.95 -107.86 REMARK 500 ASN A 178 -112.52 62.88 REMARK 500 GLU A 205 -130.73 51.71 REMARK 500 LYS B 62 -63.21 -109.52 REMARK 500 ASN B 178 -111.63 59.51 REMARK 500 GLU B 205 -131.12 50.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 NE2 REMARK 620 2 HIS A 110 NE2 98.6 REMARK 620 3 ASP A 194 OD2 79.9 116.0 REMARK 620 4 HIS A 198 NE2 99.4 120.3 123.0 REMARK 620 5 HOH A 402 O 166.0 89.5 86.3 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 59 NE2 REMARK 620 2 HIS B 110 NE2 95.9 REMARK 620 3 ASP B 194 OD2 81.1 118.1 REMARK 620 4 HIS B 198 NE2 95.6 119.8 122.0 REMARK 620 5 HOH B 402 O 171.2 89.8 90.3 87.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4F2N RELATED DB: PDB REMARK 900 FESOD FROM L. MAJOR REMARK 900 RELATED ID: SSGCID-TRCRA.00198.B RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 L128F IS A NATURAL VARIANT. DBREF 4H3E A 1 233 UNP Q4DCQ3 Q4DCQ3_TRYCC 1 233 DBREF 4H3E B 1 233 UNP Q4DCQ3 Q4DCQ3_TRYCC 1 233 SEQADV 4H3E MET A -7 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E ALA A -6 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS A -5 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS A -4 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS A -3 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS A -2 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS A -1 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS A 0 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E PHE A 128 UNP Q4DCQ3 LEU 128 SEE REMARK 999 SEQADV 4H3E MET B -7 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E ALA B -6 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS B -5 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS B -4 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS B -3 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS B -2 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS B -1 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E HIS B 0 UNP Q4DCQ3 EXPRESSION TAG SEQADV 4H3E PHE B 128 UNP Q4DCQ3 LEU 128 SEE REMARK 999 SEQRES 1 A 241 MET ALA HIS HIS HIS HIS HIS HIS MET LEU ARG ARG ALA SEQRES 2 A 241 VAL ASN ILE SER ILE ALA ARG GLY ARG MET ALA LEU MET SEQRES 3 A 241 SER TYR ALA THR LEU PRO ASP LEU LEU LYS PRO SER GLY SEQRES 4 A 241 ALA PRO ALA GLU LEU PRO LYS LEU GLY PHE ASN TRP LYS SEQRES 5 A 241 ASP GLY CYS ALA PRO VAL PHE SER PRO ARG GLN MET GLU SEQRES 6 A 241 LEU HIS TYR THR LYS HIS HIS LYS ALA TYR VAL ASP LYS SEQRES 7 A 241 LEU ASN ALA LEU ALA GLY THR THR TYR ASP GLY LYS SER SEQRES 8 A 241 ILE GLU GLU ILE ILE LEU ALA VAL ALA ASN ASP ALA GLU SEQRES 9 A 241 LYS LYS GLY LEU PHE ASN GLN ALA ALA GLN HIS PHE ASN SEQRES 10 A 241 HIS THR PHE TYR PHE ARG CYS ILE THR PRO ASN GLY LYS SEQRES 11 A 241 ALA MET PRO LYS SER PHE GLU SER ALA VAL THR ALA GLN SEQRES 12 A 241 PHE GLY SER VAL GLU GLN PHE LYS ASP ALA PHE VAL GLN SEQRES 13 A 241 ALA GLY VAL ASN ASN PHE GLY SER GLY TRP THR TRP LEU SEQRES 14 A 241 CYS VAL ASP PRO SER ASN LYS ASN GLN LEU VAL ILE ASP SEQRES 15 A 241 ASN THR SER ASN ALA GLY CYS PRO LEU THR LYS GLY LEU SEQRES 16 A 241 ARG PRO VAL LEU ALA VAL ASP VAL TRP GLU HIS ALA TYR SEQRES 17 A 241 TYR LYS ASP PHE GLU ASN ARG ARG PRO ASP TYR LEU LYS SEQRES 18 A 241 GLU ILE TRP SER VAL ILE ASP TRP GLU PHE VAL ALA LYS SEQRES 19 A 241 MET HIS ALA GLN ALA ILE LYS SEQRES 1 B 241 MET ALA HIS HIS HIS HIS HIS HIS MET LEU ARG ARG ALA SEQRES 2 B 241 VAL ASN ILE SER ILE ALA ARG GLY ARG MET ALA LEU MET SEQRES 3 B 241 SER TYR ALA THR LEU PRO ASP LEU LEU LYS PRO SER GLY SEQRES 4 B 241 ALA PRO ALA GLU LEU PRO LYS LEU GLY PHE ASN TRP LYS SEQRES 5 B 241 ASP GLY CYS ALA PRO VAL PHE SER PRO ARG GLN MET GLU SEQRES 6 B 241 LEU HIS TYR THR LYS HIS HIS LYS ALA TYR VAL ASP LYS SEQRES 7 B 241 LEU ASN ALA LEU ALA GLY THR THR TYR ASP GLY LYS SER SEQRES 8 B 241 ILE GLU GLU ILE ILE LEU ALA VAL ALA ASN ASP ALA GLU SEQRES 9 B 241 LYS LYS GLY LEU PHE ASN GLN ALA ALA GLN HIS PHE ASN SEQRES 10 B 241 HIS THR PHE TYR PHE ARG CYS ILE THR PRO ASN GLY LYS SEQRES 11 B 241 ALA MET PRO LYS SER PHE GLU SER ALA VAL THR ALA GLN SEQRES 12 B 241 PHE GLY SER VAL GLU GLN PHE LYS ASP ALA PHE VAL GLN SEQRES 13 B 241 ALA GLY VAL ASN ASN PHE GLY SER GLY TRP THR TRP LEU SEQRES 14 B 241 CYS VAL ASP PRO SER ASN LYS ASN GLN LEU VAL ILE ASP SEQRES 15 B 241 ASN THR SER ASN ALA GLY CYS PRO LEU THR LYS GLY LEU SEQRES 16 B 241 ARG PRO VAL LEU ALA VAL ASP VAL TRP GLU HIS ALA TYR SEQRES 17 B 241 TYR LYS ASP PHE GLU ASN ARG ARG PRO ASP TYR LEU LYS SEQRES 18 B 241 GLU ILE TRP SER VAL ILE ASP TRP GLU PHE VAL ALA LYS SEQRES 19 B 241 MET HIS ALA GLN ALA ILE LYS HET FE2 A 301 1 HET FE2 B 301 1 HETNAM FE2 FE (II) ION FORMUL 3 FE2 2(FE 2+) FORMUL 5 HOH *348(H2 O) HELIX 1 1 ASN A 42 GLY A 46 5 5 HELIX 2 2 SER A 52 LYS A 62 1 11 HELIX 3 3 LYS A 62 GLY A 76 1 15 HELIX 4 4 SER A 83 ALA A 92 1 10 HELIX 5 5 ASP A 94 GLU A 96 5 3 HELIX 6 6 LYS A 97 CYS A 116 1 20 HELIX 7 7 PRO A 125 GLY A 137 1 13 HELIX 8 8 SER A 138 ASN A 152 1 15 HELIX 9 9 PRO A 165 LYS A 168 5 4 HELIX 10 10 CYS A 181 GLY A 186 5 6 HELIX 11 11 TRP A 196 ALA A 199 5 4 HELIX 12 12 TYR A 200 GLU A 205 1 6 HELIX 13 13 ARG A 207 ILE A 215 1 9 HELIX 14 14 TRP A 216 ILE A 219 5 4 HELIX 15 15 ASP A 220 LYS A 233 1 14 HELIX 16 16 ASN B 42 GLY B 46 5 5 HELIX 17 17 SER B 52 LYS B 62 1 11 HELIX 18 18 LYS B 62 GLY B 76 1 15 HELIX 19 19 SER B 83 ALA B 92 1 10 HELIX 20 20 ASP B 94 GLU B 96 5 3 HELIX 21 21 LYS B 97 CYS B 116 1 20 HELIX 22 22 PRO B 125 GLY B 137 1 13 HELIX 23 23 SER B 138 ASN B 152 1 15 HELIX 24 24 PRO B 165 LYS B 168 5 4 HELIX 25 25 CYS B 181 GLY B 186 5 6 HELIX 26 26 TRP B 196 ALA B 199 5 4 HELIX 27 27 TYR B 200 GLU B 205 1 6 HELIX 28 28 ARG B 207 ILE B 215 1 9 HELIX 29 29 TRP B 216 ILE B 219 5 4 HELIX 30 30 ASP B 220 LYS B 233 1 14 SHEET 1 A 3 LEU A 171 SER A 177 0 SHEET 2 A 3 GLY A 157 VAL A 163 -1 N CYS A 162 O VAL A 172 SHEET 3 A 3 ARG A 188 ASP A 194 -1 O VAL A 190 N LEU A 161 SHEET 1 B 3 LEU B 171 SER B 177 0 SHEET 2 B 3 GLY B 157 VAL B 163 -1 N CYS B 162 O VAL B 172 SHEET 3 B 3 ARG B 188 ASP B 194 -1 O VAL B 190 N LEU B 161 LINK NE2 HIS A 59 FE FE2 A 301 1555 1555 2.26 LINK NE2 HIS A 110 FE FE2 A 301 1555 1555 2.16 LINK OD2 ASP A 194 FE FE2 A 301 1555 1555 2.01 LINK NE2 HIS A 198 FE FE2 A 301 1555 1555 2.15 LINK FE FE2 A 301 O HOH A 402 1555 1555 2.32 LINK NE2 HIS B 59 FE FE2 B 301 1555 1555 2.33 LINK NE2 HIS B 110 FE FE2 B 301 1555 1555 2.14 LINK OD2 ASP B 194 FE FE2 B 301 1555 1555 1.94 LINK NE2 HIS B 198 FE FE2 B 301 1555 1555 2.15 LINK FE FE2 B 301 O HOH B 402 1555 1555 2.30 CISPEP 1 ALA A 48 PRO A 49 0 4.54 CISPEP 2 ALA B 48 PRO B 49 0 2.10 SITE 1 AC1 5 HIS A 59 HIS A 110 ASP A 194 HIS A 198 SITE 2 AC1 5 HOH A 402 SITE 1 AC2 5 HIS B 59 HIS B 110 ASP B 194 HIS B 198 SITE 2 AC2 5 HOH B 402 CRYST1 47.650 75.680 117.450 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020986 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008514 0.00000