PDB Short entry for 4HDA HEADER HYDROLASE/HYDROLASE ACTIVATOR 02-OCT-12 4HDA TITLE CRYSTAL STRUCTURE OF HUMAN SIRT5 IN COMPLEX WITH FLUOR-DE-LYS PEPTIDE TITLE 2 AND RESVERATROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 34-302; COMPND 5 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 5, SIR2-LIKE PROTEIN 5; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: FLUOR-DE-LYS PEPTIDE; COMPND 10 CHAIN: F; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIR2L5, SIRT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: COUMARIN-MODIFIED TETRA PEPTIDE KEYWDS NAD-DEPENDENT DEACETYLASE, SIRTUIN, MITOCHONDRIAL, ACTIVATOR COMPLEX, KEYWDS 2 RESVERATROL, HYDROLASE-HYDROLASE ACTIVATOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.GERTZ,C.STEEGBORN REVDAT 3 28-FEB-24 4HDA 1 REMARK SEQADV LINK REVDAT 2 20-FEB-13 4HDA 1 JRNL REVDAT 1 05-DEC-12 4HDA 0 JRNL AUTH M.GERTZ,G.T.NGUYEN,F.FISCHER,B.SUENKEL,C.SCHLICKER, JRNL AUTH 2 B.FRANZEL,J.TOMASCHEWSKI,F.ALADINI,C.BECKER,D.WOLTERS, JRNL AUTH 3 C.STEEGBORN JRNL TITL A MOLECULAR MECHANISM FOR DIRECT SIRTUIN ACTIVATION BY JRNL TITL 2 RESVERATROL. JRNL REF PLOS ONE V. 7 49761 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23185430 JRNL DOI 10.1371/JOURNAL.PONE.0049761 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 15353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9466 - 4.4511 0.94 2991 150 0.1689 0.2152 REMARK 3 2 4.4511 - 3.5352 0.94 2948 154 0.1771 0.2270 REMARK 3 3 3.5352 - 3.0890 0.93 2915 154 0.2055 0.2544 REMARK 3 4 3.0890 - 2.8069 0.93 2882 151 0.2505 0.3281 REMARK 3 5 2.8069 - 2.6058 0.91 2834 151 0.3218 0.3782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 25.67 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.02000 REMARK 3 B22 (A**2) : 11.99110 REMARK 3 B33 (A**2) : -17.01110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.08060 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.5210 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4289 REMARK 3 ANGLE : 1.325 5821 REMARK 3 CHIRALITY : 0.069 621 REMARK 3 PLANARITY : 0.008 767 REMARK 3 DIHEDRAL : 19.959 1567 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HDA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 38.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 MM NH4CL, 15% (W/V) PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.34500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 28 REMARK 465 ILE A 29 REMARK 465 ASP A 30 REMARK 465 PRO A 31 REMARK 465 PHE A 32 REMARK 465 THR A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 302 REMARK 465 GLY B 28 REMARK 465 ILE B 29 REMARK 465 ASP B 30 REMARK 465 PRO B 31 REMARK 465 PHE B 32 REMARK 465 ARG F 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 129 N GLN B 131 2.06 REMARK 500 O CYS A 242 NH2 ARG A 267 2.07 REMARK 500 OG SER A 62 OD2 ASP A 143 2.19 REMARK 500 O ALA B 82 N ASP B 84 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 68 C - N - CA ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 36 94.34 -18.05 REMARK 500 SER A 65 -134.18 -61.84 REMARK 500 PHE A 70 -50.91 -131.47 REMARK 500 ARG A 71 73.13 -60.69 REMARK 500 TRP A 77 112.73 66.30 REMARK 500 ARG A 78 -128.34 34.35 REMARK 500 ALA A 86 38.08 -94.00 REMARK 500 ARG A 105 -78.73 -37.14 REMARK 500 GLU A 107 -78.77 -63.48 REMARK 500 VAL A 108 -28.45 -25.74 REMARK 500 ARG A 127 -77.85 -34.09 REMARK 500 LEU A 161 34.94 -94.93 REMARK 500 PHE A 162 29.94 -142.96 REMARK 500 SER A 168 -66.51 -109.25 REMARK 500 CYS A 169 48.21 -102.11 REMARK 500 ALA A 189 122.81 -30.19 REMARK 500 ASP A 196 -137.00 -65.90 REMARK 500 ALA A 197 -50.64 -165.38 REMARK 500 PRO A 200 127.62 -35.77 REMARK 500 CYS A 212 -84.58 -118.04 REMARK 500 ASN A 226 -166.23 -101.94 REMARK 500 SER A 251 -149.06 -92.99 REMARK 500 ALA A 257 109.47 -169.53 REMARK 500 ALA A 258 -59.84 -176.90 REMARK 500 MET A 259 -12.20 -44.33 REMARK 500 THR A 278 -96.12 -33.99 REMARK 500 PHE A 285 -162.49 -160.76 REMARK 500 THR A 295 -84.19 -50.20 REMARK 500 THR A 296 -75.91 -42.74 REMARK 500 ARG B 35 -57.61 -134.75 REMARK 500 HIS B 52 98.88 -162.68 REMARK 500 VAL B 61 -17.90 -49.88 REMARK 500 GLU B 64 0.69 -49.01 REMARK 500 PRO B 68 92.07 -60.83 REMARK 500 THR B 69 97.34 -66.30 REMARK 500 PHE B 70 32.25 -73.20 REMARK 500 ARG B 78 -141.93 71.15 REMARK 500 GLN B 83 -11.46 -36.74 REMARK 500 PRO B 95 -16.63 -45.32 REMARK 500 SER B 111 -50.06 173.71 REMARK 500 ASN B 115 156.27 -48.03 REMARK 500 LYS B 130 -16.36 -26.23 REMARK 500 ASN B 141 108.59 -54.12 REMARK 500 GLU B 144 -4.50 75.19 REMARK 500 LEU B 145 -19.23 -46.50 REMARK 500 LYS B 148 6.00 -68.11 REMARK 500 ASN B 153 83.68 -64.62 REMARK 500 LYS B 177 104.93 -35.97 REMARK 500 SER B 198 47.14 73.79 REMARK 500 CYS B 212 -60.91 -131.42 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 166 SG REMARK 620 2 CYS A 169 SG 114.4 REMARK 620 3 CYS A 207 SG 109.0 125.7 REMARK 620 4 CYS A 212 SG 97.7 98.4 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 166 SG REMARK 620 2 CYS B 169 SG 103.9 REMARK 620 3 CYS B 207 SG 112.6 108.0 REMARK 620 4 CYS B 212 SG 95.2 128.3 107.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STL B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HD8 RELATED DB: PDB DBREF 4HDA A 34 302 UNP Q9NXA8 SIR5_HUMAN 34 302 DBREF 4HDA B 34 302 UNP Q9NXA8 SIR5_HUMAN 34 302 DBREF 4HDA F 1 4 PDB 4HDA 4HDA 1 4 SEQADV 4HDA GLY A 28 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA ILE A 29 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA ASP A 30 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA PRO A 31 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA PHE A 32 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA THR A 33 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA GLY B 28 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA ILE B 29 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA ASP B 30 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA PRO B 31 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA PHE B 32 UNP Q9NXA8 EXPRESSION TAG SEQADV 4HDA THR B 33 UNP Q9NXA8 EXPRESSION TAG SEQRES 1 A 275 GLY ILE ASP PRO PHE THR ALA ARG PRO SER SER SER MET SEQRES 2 A 275 ALA ASP PHE ARG LYS PHE PHE ALA LYS ALA LYS HIS ILE SEQRES 3 A 275 VAL ILE ILE SER GLY ALA GLY VAL SER ALA GLU SER GLY SEQRES 4 A 275 VAL PRO THR PHE ARG GLY ALA GLY GLY TYR TRP ARG LYS SEQRES 5 A 275 TRP GLN ALA GLN ASP LEU ALA THR PRO LEU ALA PHE ALA SEQRES 6 A 275 HIS ASN PRO SER ARG VAL TRP GLU PHE TYR HIS TYR ARG SEQRES 7 A 275 ARG GLU VAL MET GLY SER LYS GLU PRO ASN ALA GLY HIS SEQRES 8 A 275 ARG ALA ILE ALA GLU CYS GLU THR ARG LEU GLY LYS GLN SEQRES 9 A 275 GLY ARG ARG VAL VAL VAL ILE THR GLN ASN ILE ASP GLU SEQRES 10 A 275 LEU HIS ARG LYS ALA GLY THR LYS ASN LEU LEU GLU ILE SEQRES 11 A 275 HIS GLY SER LEU PHE LYS THR ARG CYS THR SER CYS GLY SEQRES 12 A 275 VAL VAL ALA GLU ASN TYR LYS SER PRO ILE CYS PRO ALA SEQRES 13 A 275 LEU SER GLY LYS GLY ALA PRO GLU PRO GLY THR GLN ASP SEQRES 14 A 275 ALA SER ILE PRO VAL GLU LYS LEU PRO ARG CYS GLU GLU SEQRES 15 A 275 ALA GLY CYS GLY GLY LEU LEU ARG PRO HIS VAL VAL TRP SEQRES 16 A 275 PHE GLY GLU ASN LEU ASP PRO ALA ILE LEU GLU GLU VAL SEQRES 17 A 275 ASP ARG GLU LEU ALA HIS CYS ASP LEU CYS LEU VAL VAL SEQRES 18 A 275 GLY THR SER SER VAL VAL TYR PRO ALA ALA MET PHE ALA SEQRES 19 A 275 PRO GLN VAL ALA ALA ARG GLY VAL PRO VAL ALA GLU PHE SEQRES 20 A 275 ASN THR GLU THR THR PRO ALA THR ASN ARG PHE ARG PHE SEQRES 21 A 275 HIS PHE GLN GLY PRO CYS GLY THR THR LEU PRO GLU ALA SEQRES 22 A 275 LEU ALA SEQRES 1 B 275 GLY ILE ASP PRO PHE THR ALA ARG PRO SER SER SER MET SEQRES 2 B 275 ALA ASP PHE ARG LYS PHE PHE ALA LYS ALA LYS HIS ILE SEQRES 3 B 275 VAL ILE ILE SER GLY ALA GLY VAL SER ALA GLU SER GLY SEQRES 4 B 275 VAL PRO THR PHE ARG GLY ALA GLY GLY TYR TRP ARG LYS SEQRES 5 B 275 TRP GLN ALA GLN ASP LEU ALA THR PRO LEU ALA PHE ALA SEQRES 6 B 275 HIS ASN PRO SER ARG VAL TRP GLU PHE TYR HIS TYR ARG SEQRES 7 B 275 ARG GLU VAL MET GLY SER LYS GLU PRO ASN ALA GLY HIS SEQRES 8 B 275 ARG ALA ILE ALA GLU CYS GLU THR ARG LEU GLY LYS GLN SEQRES 9 B 275 GLY ARG ARG VAL VAL VAL ILE THR GLN ASN ILE ASP GLU SEQRES 10 B 275 LEU HIS ARG LYS ALA GLY THR LYS ASN LEU LEU GLU ILE SEQRES 11 B 275 HIS GLY SER LEU PHE LYS THR ARG CYS THR SER CYS GLY SEQRES 12 B 275 VAL VAL ALA GLU ASN TYR LYS SER PRO ILE CYS PRO ALA SEQRES 13 B 275 LEU SER GLY LYS GLY ALA PRO GLU PRO GLY THR GLN ASP SEQRES 14 B 275 ALA SER ILE PRO VAL GLU LYS LEU PRO ARG CYS GLU GLU SEQRES 15 B 275 ALA GLY CYS GLY GLY LEU LEU ARG PRO HIS VAL VAL TRP SEQRES 16 B 275 PHE GLY GLU ASN LEU ASP PRO ALA ILE LEU GLU GLU VAL SEQRES 17 B 275 ASP ARG GLU LEU ALA HIS CYS ASP LEU CYS LEU VAL VAL SEQRES 18 B 275 GLY THR SER SER VAL VAL TYR PRO ALA ALA MET PHE ALA SEQRES 19 B 275 PRO GLN VAL ALA ALA ARG GLY VAL PRO VAL ALA GLU PHE SEQRES 20 B 275 ASN THR GLU THR THR PRO ALA THR ASN ARG PHE ARG PHE SEQRES 21 B 275 HIS PHE GLN GLY PRO CYS GLY THR THR LEU PRO GLU ALA SEQRES 22 B 275 LEU ALA SEQRES 1 F 4 ARG HIS LYS FDL MODRES 4HDA FDL F 4 LYS HET FDL F 4 25 HET ZN A 401 1 HET ZN B 401 1 HET STL B 402 17 HETNAM FDL N~6~-ACETYL-N-(4-METHYL-2-OXO-2H-CHROMEN-7-YL)-L- HETNAM 2 FDL LYSINAMIDE HETNAM ZN ZINC ION HETNAM STL RESVERATROL FORMUL 3 FDL C18 H23 N3 O4 FORMUL 4 ZN 2(ZN 2+) FORMUL 6 STL C14 H12 O3 FORMUL 7 HOH *15(H2 O) HELIX 1 1 SER A 39 ALA A 50 1 12 HELIX 2 2 GLY A 58 SER A 65 1 8 HELIX 3 3 GLN A 81 ALA A 86 1 6 HELIX 4 4 LEU A 89 ASN A 94 1 6 HELIX 5 5 PRO A 95 MET A 109 1 15 HELIX 6 6 ASN A 115 GLY A 132 1 18 HELIX 7 7 GLU A 144 GLY A 150 1 7 HELIX 8 8 CYS A 181 SER A 185 5 5 HELIX 9 9 PRO A 200 LEU A 204 5 5 HELIX 10 10 ASP A 228 ASP A 236 1 9 HELIX 11 11 ASP A 236 HIS A 241 1 6 HELIX 12 12 PHE A 260 GLY A 268 1 9 HELIX 13 13 THR A 295 LEU A 301 1 7 HELIX 14 14 SER B 39 ALA B 48 1 10 HELIX 15 15 ALA B 59 GLU B 64 1 6 HELIX 16 16 GLN B 81 LEU B 85 5 5 HELIX 17 17 THR B 87 ASN B 94 1 8 HELIX 18 18 ARG B 97 VAL B 108 1 12 HELIX 19 19 ASN B 115 LYS B 130 1 16 HELIX 20 20 HIS B 146 GLY B 150 5 5 HELIX 21 21 CYS B 181 SER B 185 5 5 HELIX 22 22 ASP B 228 CYS B 242 1 15 HELIX 23 23 PRO B 256 PHE B 260 5 5 HELIX 24 24 ALA B 261 ALA B 266 1 6 HELIX 25 25 PRO B 292 LEU B 301 1 10 SHEET 1 A 6 LEU A 154 GLU A 156 0 SHEET 2 A 6 ARG A 134 THR A 139 1 N THR A 139 O LEU A 155 SHEET 3 A 6 HIS A 52 SER A 57 1 N SER A 57 O ILE A 138 SHEET 4 A 6 LEU A 244 GLY A 249 1 O LEU A 246 N VAL A 54 SHEET 5 A 6 VAL A 271 ASN A 275 1 O PHE A 274 N VAL A 247 SHEET 6 A 6 PHE A 287 GLN A 290 1 O PHE A 287 N GLU A 273 SHEET 1 B 3 VAL A 172 GLU A 174 0 SHEET 2 B 3 GLY A 159 CYS A 166 -1 N THR A 164 O ALA A 173 SHEET 3 B 3 LEU A 216 VAL A 220 -1 O ARG A 217 N ARG A 165 SHEET 1 C 6 LEU B 154 GLU B 156 0 SHEET 2 C 6 ARG B 134 THR B 139 1 N VAL B 137 O LEU B 155 SHEET 3 C 6 HIS B 52 SER B 57 1 N ILE B 55 O VAL B 136 SHEET 4 C 6 LEU B 244 VAL B 248 1 O LEU B 246 N VAL B 54 SHEET 5 C 6 VAL B 271 ASN B 275 1 O PHE B 274 N VAL B 247 SHEET 6 C 6 HIS B 288 GLN B 290 1 O PHE B 289 N GLU B 273 SHEET 1 D 3 VAL B 172 GLU B 174 0 SHEET 2 D 3 GLY B 159 CYS B 166 -1 N THR B 164 O ALA B 173 SHEET 3 D 3 LEU B 216 VAL B 220 -1 O ARG B 217 N ARG B 165 LINK SG CYS A 166 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 169 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 207 ZN ZN A 401 1555 1555 2.46 LINK SG CYS A 212 ZN ZN A 401 1555 1555 2.28 LINK SG CYS B 166 ZN ZN B 401 1555 1555 2.32 LINK SG CYS B 169 ZN ZN B 401 1555 1555 2.32 LINK SG CYS B 207 ZN ZN B 401 1555 1555 2.36 LINK SG CYS B 212 ZN ZN B 401 1555 1555 2.29 CISPEP 1 SER A 178 PRO A 179 0 -1.09 CISPEP 2 TYR A 255 PRO A 256 0 -1.26 CISPEP 3 SER B 178 PRO B 179 0 1.66 CISPEP 4 TYR B 255 PRO B 256 0 10.37 SITE 1 AC1 4 CYS A 166 CYS A 169 CYS A 207 CYS A 212 SITE 1 AC2 4 CYS B 166 CYS B 169 CYS B 207 CYS B 212 SITE 1 AC3 4 LYS B 51 GLY B 72 THR B 279 FDL F 4 CRYST1 41.300 112.690 55.890 90.00 90.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024213 0.000000 0.000021 0.00000 SCALE2 0.000000 0.008874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017892 0.00000